MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57069 bp
Accession: NZ_CP029276 Location: 1..57069 Organism: Xanthomonas citri strain M11 Replicon: plasmid unnameda
Accession: NZ_CP029276 Location: 1..57069 Organism: Xanthomonas citri strain M11 Replicon: plasmid unnameda
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGM98_RS21855 (DGM98_22930) | 48..419 | - | 372 | WP_022557717.1 | hypothetical protein | - |
| DGM98_RS21860 (DGM98_22935) | 546..944 | - | 399 | WP_039731964.1 | hypothetical protein | - |
| DGM98_RS21865 (DGM98_22940) | 1523..1798 | - | 276 | WP_022557719.1 | hypothetical protein | - |
| DGM98_RS21870 (DGM98_22945) | 2358..2681 | - | 324 | WP_022557721.1 | hypothetical protein | - |
| DGM98_RS21875 (DGM98_22960) | 4003..4611 | + | 609 | WP_040965625.1 | hypothetical protein | - |
| DGM98_RS21880 (DGM98_22965) | 4648..5121 | - | 474 | WP_234346901.1 | hypothetical protein | - |
| DGM98_RS22490 | 5270..5836 | - | 567 | WP_022557726.1 | hypothetical protein | - |
| DGM98_RS21895 (DGM98_22980) | 5877..6338 | - | 462 | WP_039731445.1 | hypothetical protein | - |
| DGM98_RS21900 (DGM98_22985) | 6517..7374 | - | 858 | WP_033481873.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| DGM98_RS21905 (DGM98_22990) | 7367..8281 | - | 915 | WP_022557729.1 | hypothetical protein | - |
| DGM98_RS22510 (DGM98_22995) | 8954..9139 | + | 186 | Protein_10 | avirulence protein | - |
| DGM98_RS21915 (DGM98_23000) | 9202..10254 | + | 1053 | WP_022557730.1 | type III secretion system YopJ family effector AvrBsT | - |
| DGM98_RS21920 (DGM98_23015) | 11538..11786 | - | 249 | WP_042826723.1 | hypothetical protein | - |
| DGM98_RS21925 (DGM98_23020) | 11876..12834 | - | 959 | Protein_13 | IS3 family transposase ISXcd1 | Transposase |
| DGM98_RS21930 (DGM98_23025) | 12867..15896 | - | 3030 | WP_022560486.1 | Tn3 family transposase ISPsy42 | Transposase |
| DGM98_RS21935 (DGM98_23030) | 15893..16486 | - | 594 | WP_022560487.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| DGM98_RS21940 (DGM98_23035) | 16698..16952 | + | 255 | WP_022557731.1 | plasmid stability protein | Antitoxin Detail |
| DGM98_RS21945 (DGM98_23040) | 16949..17365 | + | 417 | WP_022557732.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DGM98_RS21950 (DGM98_23045) | 17379..17933 | + | 555 | WP_033482006.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGM98_RS21955 (DGM98_23050) | 18008..18145 | - | 138 | Protein_19 | IS3 family transposase ISXcd1 | Transposase |
| DGM98_RS21960 (DGM98_23055) | 18194..18742 | - | 549 | WP_022557734.1 | DNA topoisomerase | - |
| DGM98_RS21965 (DGM98_23060) | 18897..20189 | - | 1293 | WP_033481893.1 | M12 family metallo-peptidase | - |
| DGM98_RS21970 (DGM98_23065) | 20316..21635 | - | 1320 | WP_022557736.1 | right-handed parallel beta-helix repeat-containing protein | - |
| DGM98_RS21975 (DGM98_23075) | 22010..22864 | - | 855 | WP_022557737.1 | DNA topoisomerase | - |
| DGM98_RS21980 (DGM98_23080) | 22866..23114 | - | 249 | WP_033481882.1 | hypothetical protein | - |
| DGM98_RS21985 (DGM98_23085) | 23187..23426 | - | 240 | WP_005997461.1 | hypothetical protein | - |
| DGM98_RS21990 (DGM98_23090) | 23437..23625 | - | 189 | WP_228329193.1 | hypothetical protein | - |
| DGM98_RS21995 (DGM98_23095) | 23816..25168 | - | 1353 | WP_046735872.1 | TrbI/VirB10 family protein | - |
| DGM98_RS22000 (DGM98_23100) | 25184..26176 | - | 993 | WP_017164024.1 | P-type conjugative transfer protein TrbG | - |
| DGM98_RS22005 (DGM98_23105) | 26203..26913 | - | 711 | WP_039574290.1 | conjugal transfer protein TrbF | - |
| DGM98_RS22010 (DGM98_23110) | 26920..28398 | - | 1479 | WP_046735871.1 | P-type conjugative transfer protein TrbL | - |
| DGM98_RS22015 | 28616..28969 | - | 354 | WP_127446653.1 | hypothetical protein | - |
| DGM98_RS22020 (DGM98_23115) | 28966..29739 | - | 774 | WP_039570072.1 | conjugal transfer protein | - |
| DGM98_RS22025 (DGM98_23120) | 29758..32328 | - | 2571 | WP_039570074.1 | DUF853 family protein | - |
| DGM98_RS22030 (DGM98_23125) | 32395..32661 | - | 267 | WP_227479455.1 | VirB3 family type IV secretion system protein | - |
| DGM98_RS22035 (DGM98_23130) | 32664..32984 | - | 321 | WP_017162817.1 | TrbC/VirB2 family protein | - |
| DGM98_RS22040 (DGM98_23135) | 33059..34063 | - | 1005 | WP_017164019.1 | Putative conjugal transfer protein | VF |
| DGM98_RS22045 (DGM98_23140) | 34148..34357 | - | 210 | WP_017164018.1 | helix-turn-helix transcriptional regulator | - |
| DGM98_RS22050 (DGM98_23145) | 35060..35878 | - | 819 | WP_039587854.1 | hypothetical protein | - |
| DGM98_RS22055 (DGM98_23150) | 36454..36843 | - | 390 | WP_039587855.1 | hypothetical protein | - |
| DGM98_RS22060 (DGM98_23155) | 36986..37432 | - | 447 | WP_039572194.1 | avidin/streptavidin family protein | - |
| DGM98_RS22065 (DGM98_23160) | 37814..39040 | - | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| DGM98_RS22070 (DGM98_23165) | 39072..39383 | + | 312 | WP_099802907.1 | hypothetical protein | - |
| DGM98_RS22075 (DGM98_23170) | 39549..40088 | - | 540 | WP_022557742.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGM98_RS22080 (DGM98_23175) | 40121..40612 | - | 492 | WP_017171863.1 | hypothetical protein | - |
| DGM98_RS22495 (DGM98_23180) | 40609..42597 | - | 1989 | WP_227479507.1 | Conjugal transfer protein TraG | VF |
| DGM98_RS22090 (DGM98_23185) | 42665..45619 | - | 2955 | WP_227479506.1 | hypothetical protein | Relaxase |
| DGM98_RS22095 (DGM98_23190) | 45906..46496 | - | 591 | WP_052756669.1 | Type IV secretion system protein virB1 | VF |
| DGM98_RS22100 (DGM98_23195) | 46489..47085 | - | 597 | WP_080948837.1 | S26 family signal peptidase | - |
| DGM98_RS22105 (DGM98_23200) | 47090..47554 | - | 465 | WP_022557748.1 | DUF2840 domain-containing protein | - |
| DGM98_RS22110 (DGM98_23205) | 47798..48133 | - | 336 | WP_039572180.1 | hypothetical protein | - |
| DGM98_RS22115 (DGM98_23210) | 48130..48765 | - | 636 | WP_039572177.1 | ParA family partition ATPase | - |
| DGM98_RS22120 | 48837..49175 | + | 339 | WP_099859120.1 | hypothetical protein | - |
| DGM98_RS22125 (DGM98_23215) | 49783..50604 | - | 822 | WP_099802905.1 | hypothetical protein | - |
| DGM98_RS22130 (DGM98_23220) | 50958..51542 | - | 585 | WP_022557751.1 | DUF6012 family protein | - |
| DGM98_RS22135 (DGM98_23225) | 51654..51998 | - | 345 | WP_022557752.1 | hypothetical protein | - |
| DGM98_RS22140 (DGM98_23230) | 52226..52453 | - | 228 | WP_022557753.1 | hypothetical protein | - |
| DGM98_RS22145 (DGM98_23235) | 52505..52777 | - | 273 | WP_022557754.1 | hypothetical protein | - |
| DGM98_RS22150 (DGM98_23245) | 53034..57050 | + | 4017 | WP_099802904.1 | type III secretion system effector avirulence protein AvrBs3 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|