MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57070 bp
Accession: NZ_CP029274 Location: 1..57070 Organism: Xanthomonas citri strain T21 Replicon: plasmid unnameda
Accession: NZ_CP029274 Location: 1..57070 Organism: Xanthomonas citri strain T21 Replicon: plasmid unnameda
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGN02_RS22175 (DGN02_23125) | 48..419 | - | 372 | WP_022557717.1 | hypothetical protein | - |
| DGN02_RS22180 (DGN02_23130) | 546..944 | - | 399 | WP_039731964.1 | hypothetical protein | - |
| DGN02_RS22185 (DGN02_23135) | 1523..1798 | - | 276 | WP_022557719.1 | hypothetical protein | - |
| DGN02_RS22190 (DGN02_23140) | 2358..2681 | - | 324 | WP_022557721.1 | hypothetical protein | - |
| DGN02_RS22195 (DGN02_23155) | 4003..4611 | + | 609 | WP_040965625.1 | hypothetical protein | - |
| DGN02_RS22200 (DGN02_23160) | 4648..5121 | - | 474 | WP_234346901.1 | hypothetical protein | - |
| DGN02_RS22785 | 5270..5836 | - | 567 | WP_022557726.1 | hypothetical protein | - |
| DGN02_RS22215 (DGN02_23175) | 5877..6338 | - | 462 | WP_039731445.1 | hypothetical protein | - |
| DGN02_RS22220 (DGN02_23180) | 6517..7374 | - | 858 | WP_033481873.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| DGN02_RS22225 (DGN02_23185) | 7367..8281 | - | 915 | WP_022557729.1 | hypothetical protein | - |
| DGN02_RS22845 (DGN02_23190) | 8955..9140 | + | 186 | Protein_10 | avirulence protein | - |
| DGN02_RS22235 (DGN02_23195) | 9203..10255 | + | 1053 | WP_022557730.1 | type III secretion system YopJ family effector AvrBsT | - |
| DGN02_RS22240 (DGN02_23210) | 11539..11787 | - | 249 | WP_042826723.1 | hypothetical protein | - |
| DGN02_RS22245 (DGN02_23215) | 11877..12835 | - | 959 | Protein_13 | IS3 family transposase ISXcd1 | Transposase |
| DGN02_RS22250 (DGN02_23220) | 12868..15897 | - | 3030 | WP_022560486.1 | Tn3 family transposase ISPsy42 | Transposase |
| DGN02_RS22255 (DGN02_23225) | 15894..16487 | - | 594 | WP_022560487.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| DGN02_RS22260 (DGN02_23230) | 16699..16953 | + | 255 | WP_022557731.1 | plasmid stability protein | Antitoxin Detail |
| DGN02_RS22265 (DGN02_23235) | 16950..17366 | + | 417 | WP_022557732.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DGN02_RS22270 (DGN02_23240) | 17380..17934 | + | 555 | WP_033482006.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGN02_RS22275 (DGN02_23245) | 18009..18146 | - | 138 | Protein_19 | IS3 family transposase ISXcd1 | Transposase |
| DGN02_RS22280 (DGN02_23250) | 18195..18743 | - | 549 | WP_022557734.1 | DNA topoisomerase | - |
| DGN02_RS22285 (DGN02_23255) | 18898..20190 | - | 1293 | WP_033481893.1 | M12 family metallo-peptidase | - |
| DGN02_RS22290 (DGN02_23260) | 20317..21636 | - | 1320 | WP_022557736.1 | right-handed parallel beta-helix repeat-containing protein | - |
| DGN02_RS22295 (DGN02_23270) | 22011..22865 | - | 855 | WP_022557737.1 | DNA topoisomerase | - |
| DGN02_RS22300 (DGN02_23275) | 22867..23115 | - | 249 | WP_033481882.1 | hypothetical protein | - |
| DGN02_RS22305 (DGN02_23280) | 23188..23427 | - | 240 | WP_005997461.1 | hypothetical protein | - |
| DGN02_RS22310 (DGN02_23285) | 23438..23692 | - | 255 | WP_234349310.1 | hypothetical protein | - |
| DGN02_RS22315 (DGN02_23290) | 23817..25169 | - | 1353 | WP_046735872.1 | TrbI/VirB10 family protein | - |
| DGN02_RS22320 (DGN02_23295) | 25185..26177 | - | 993 | WP_017164024.1 | P-type conjugative transfer protein TrbG | - |
| DGN02_RS22325 (DGN02_23300) | 26204..26914 | - | 711 | WP_039574290.1 | conjugal transfer protein TrbF | - |
| DGN02_RS22330 (DGN02_23305) | 26921..28399 | - | 1479 | WP_046735871.1 | P-type conjugative transfer protein TrbL | - |
| DGN02_RS22335 | 28617..28970 | - | 354 | WP_127446653.1 | hypothetical protein | - |
| DGN02_RS22340 (DGN02_23310) | 28967..29740 | - | 774 | WP_039570072.1 | conjugal transfer protein | - |
| DGN02_RS22345 (DGN02_23315) | 29759..32329 | - | 2571 | WP_039570074.1 | DUF853 family protein | - |
| DGN02_RS22350 (DGN02_23320) | 32396..32662 | - | 267 | WP_227479455.1 | VirB3 family type IV secretion system protein | - |
| DGN02_RS22355 (DGN02_23325) | 32665..32985 | - | 321 | WP_017162817.1 | TrbC/VirB2 family protein | - |
| DGN02_RS22360 (DGN02_23330) | 33060..34064 | - | 1005 | WP_017164019.1 | Putative conjugal transfer protein | VF |
| DGN02_RS22365 (DGN02_23335) | 34149..34358 | - | 210 | WP_017164018.1 | helix-turn-helix transcriptional regulator | - |
| DGN02_RS22370 (DGN02_23340) | 35061..35879 | - | 819 | WP_039587854.1 | hypothetical protein | - |
| DGN02_RS22375 (DGN02_23345) | 36455..36844 | - | 390 | WP_039587855.1 | hypothetical protein | - |
| DGN02_RS22380 (DGN02_23350) | 36987..37433 | - | 447 | WP_039572194.1 | avidin/streptavidin family protein | - |
| DGN02_RS22385 (DGN02_23355) | 37815..39041 | - | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| DGN02_RS22390 (DGN02_23360) | 39073..39384 | + | 312 | WP_099802907.1 | hypothetical protein | - |
| DGN02_RS22395 (DGN02_23365) | 39550..40089 | - | 540 | WP_022557742.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGN02_RS22400 (DGN02_23370) | 40122..40613 | - | 492 | WP_017171863.1 | hypothetical protein | - |
| DGN02_RS22790 (DGN02_23375) | 40610..42586 | - | 1977 | WP_234341882.1 | Conjugal transfer protein TraG | VF |
| DGN02_RS22410 (DGN02_23380) | 42666..45620 | - | 2955 | WP_227479506.1 | hypothetical protein | Relaxase |
| DGN02_RS22415 (DGN02_23385) | 45907..46497 | - | 591 | WP_052756669.1 | Type IV secretion system protein virB1 | VF |
| DGN02_RS22420 (DGN02_23390) | 46490..47086 | - | 597 | WP_080948837.1 | S26 family signal peptidase | - |
| DGN02_RS22425 (DGN02_23395) | 47091..47555 | - | 465 | WP_215824740.1 | DUF2840 domain-containing protein | - |
| DGN02_RS22430 (DGN02_23400) | 47799..48134 | - | 336 | WP_039572180.1 | hypothetical protein | - |
| DGN02_RS22435 (DGN02_23405) | 48131..48766 | - | 636 | WP_039572177.1 | ParA family partition ATPase | - |
| DGN02_RS22440 | 48838..49176 | + | 339 | WP_099859120.1 | hypothetical protein | - |
| DGN02_RS22445 (DGN02_23410) | 49784..50605 | - | 822 | WP_099802905.1 | hypothetical protein | - |
| DGN02_RS22450 (DGN02_23415) | 50959..51543 | - | 585 | WP_022557751.1 | DUF6012 family protein | - |
| DGN02_RS22455 (DGN02_23420) | 51655..51999 | - | 345 | WP_022557752.1 | hypothetical protein | - |
| DGN02_RS22460 (DGN02_23425) | 52227..52454 | - | 228 | WP_022557753.1 | hypothetical protein | - |
| DGN02_RS22465 (DGN02_23430) | 52506..52778 | - | 273 | WP_022557754.1 | hypothetical protein | - |
| DGN02_RS22470 (DGN02_23440) | 53035..57051 | + | 4017 | WP_099802904.1 | type III secretion system effector avirulence protein AvrBs3 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|