MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 50275 bp
Accession: NZ_CP029265 Location: 1..50275 Organism: Xanthomonas citri pv. fuscans strain PR8F Replicon: plasmid unnameda
Accession: NZ_CP029265 Location: 1..50275 Organism: Xanthomonas citri pv. fuscans strain PR8F Replicon: plasmid unnameda
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DGN16_RS22420 (DGN16_23390) | 48..419 | - | 372 | WP_022557717.1 | hypothetical protein | - |
| DGN16_RS22425 (DGN16_23395) | 546..944 | - | 399 | WP_039731964.1 | hypothetical protein | - |
| DGN16_RS22430 (DGN16_23400) | 1523..1798 | - | 276 | WP_022557719.1 | hypothetical protein | - |
| DGN16_RS22435 (DGN16_23405) | 2358..2681 | - | 324 | WP_022557721.1 | hypothetical protein | - |
| DGN16_RS22440 (DGN16_23420) | 4003..4611 | + | 609 | WP_040965625.1 | hypothetical protein | - |
| DGN16_RS22445 (DGN16_23425) | 4648..5328 | - | 681 | WP_234338472.1 | hypothetical protein | - |
| DGN16_RS22450 (DGN16_23435) | 5406..6493 | + | 1088 | WP_099800123.1 | IS3 family transposase ISXac2 | Transposase |
| DGN16_RS23175 | 6490..7035 | - | 546 | WP_234706335.1 | hypothetical protein | - |
| DGN16_RS22465 (DGN16_23455) | 7076..7537 | - | 462 | WP_039731445.1 | hypothetical protein | - |
| DGN16_RS22470 (DGN16_23460) | 7716..8573 | - | 858 | WP_033481873.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| DGN16_RS22475 (DGN16_23465) | 8566..9480 | - | 915 | WP_022557729.1 | hypothetical protein | - |
| DGN16_RS22480 | 10163..10267 | + | 105 | Protein_11 | type III secretion system effector protein | - |
| DGN16_RS22485 (DGN16_23475) | 10402..11454 | + | 1053 | WP_022557730.1 | type III secretion system YopJ family effector AvrBsT | - |
| DGN16_RS22490 (DGN16_23480) | 11716..12942 | + | 1227 | WP_011345585.1 | IS256 family transposase ISXax1 | Transposase |
| DGN16_RS22495 (DGN16_23485) | 12955..13362 | - | 408 | WP_040965051.1 | hypothetical protein | - |
| DGN16_RS22500 (DGN16_23495) | 14075..14323 | - | 249 | WP_042826723.1 | hypothetical protein | - |
| DGN16_RS22505 (DGN16_23500) | 14413..15371 | - | 959 | Protein_16 | IS3 family transposase ISXcd1 | Transposase |
| DGN16_RS22510 (DGN16_23505) | 15404..18433 | - | 3030 | WP_022560486.1 | Tn3 family transposase ISPsy42 | Transposase |
| DGN16_RS22515 (DGN16_23510) | 18430..19023 | - | 594 | WP_022560487.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| DGN16_RS22520 (DGN16_23515) | 19235..19489 | + | 255 | WP_022557731.1 | plasmid stability protein | Antitoxin Detail |
| DGN16_RS22525 (DGN16_23520) | 19486..19902 | + | 417 | WP_022557732.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DGN16_RS22530 (DGN16_23525) | 19916..20470 | + | 555 | WP_033482006.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGN16_RS22535 (DGN16_23530) | 20545..20682 | - | 138 | Protein_22 | IS3 family transposase ISXcd1 | Transposase |
| DGN16_RS22540 (DGN16_23535) | 20731..21279 | - | 549 | WP_022557734.1 | DNA topoisomerase | - |
| DGN16_RS22545 (DGN16_23540) | 21434..22726 | - | 1293 | WP_033481893.1 | M12 family metallo-peptidase | - |
| DGN16_RS22550 (DGN16_23545) | 22853..24172 | - | 1320 | WP_022557736.1 | right-handed parallel beta-helix repeat-containing protein | - |
| DGN16_RS22555 (DGN16_23555) | 24547..25401 | - | 855 | WP_022557737.1 | DNA topoisomerase | - |
| DGN16_RS22560 (DGN16_23560) | 25403..25651 | - | 249 | WP_033481882.1 | hypothetical protein | - |
| DGN16_RS22565 (DGN16_23565) | 25724..25963 | - | 240 | WP_005997461.1 | hypothetical protein | - |
| DGN16_RS22570 (DGN16_23570) | 25974..26228 | - | 255 | WP_234349310.1 | hypothetical protein | - |
| DGN16_RS22575 (DGN16_23575) | 26353..27705 | - | 1353 | WP_022557738.1 | TrbI/VirB10 family protein | - |
| DGN16_RS22580 (DGN16_23580) | 27721..28713 | - | 993 | WP_017164024.1 | P-type conjugative transfer protein TrbG | - |
| DGN16_RS22585 (DGN16_23585) | 28740..28991 | - | 252 | WP_022557739.1 | type IV secretion system protein | - |
| DGN16_RS22590 (DGN16_23595) | 29084..30173 | - | 1090 | Protein_33 | IS3 family transposase ISXac2 | Transposase |
| DGN16_RS22595 (DGN16_23605) | 30559..30948 | - | 390 | WP_022557740.1 | hypothetical protein | - |
| DGN16_RS22600 (DGN16_23610) | 31415..31861 | - | 447 | WP_022557741.1 | avidin/streptavidin family protein | - |
| DGN16_RS22605 (DGN16_23615) | 32191..32475 | + | 285 | WP_017154819.1 | hypothetical protein | - |
| DGN16_RS22610 (DGN16_23620) | 32641..33180 | - | 540 | WP_022557742.1 | plasmid pRiA4b ORF-3 family protein | - |
| DGN16_RS22615 (DGN16_23625) | 33194..33703 | - | 510 | WP_022557743.1 | hypothetical protein | - |
| DGN16_RS23180 (DGN16_23630) | 33700..35751 | - | 2052 | WP_022557744.1 | Conjugal transfer protein TraG | VF |
| DGN16_RS22625 (DGN16_23635) | 35756..38710 | - | 2955 | WP_022557745.1 | hypothetical protein | Relaxase |
| DGN16_RS22630 (DGN16_23640) | 39013..39603 | - | 591 | WP_048481488.1 | Type IV secretion system protein virB1 | VF |
| DGN16_RS22635 (DGN16_23645) | 39596..40192 | - | 597 | WP_080720968.1 | S26 family signal peptidase | - |
| DGN16_RS22640 (DGN16_23650) | 40197..40661 | - | 465 | WP_022557748.1 | DUF2840 domain-containing protein | - |
| DGN16_RS22645 (DGN16_23655) | 41001..41336 | - | 336 | WP_022557749.1 | hypothetical protein | - |
| DGN16_RS22650 (DGN16_23660) | 41333..41971 | - | 639 | WP_017162872.1 | ParA family partition ATPase | - |
| DGN16_RS22655 (DGN16_23665) | 42192..42380 | + | 189 | WP_234706489.1 | hypothetical protein | - |
| DGN16_RS22660 (DGN16_23670) | 42989..43810 | - | 822 | WP_022557750.1 | hypothetical protein | - |
| DGN16_RS22665 (DGN16_23675) | 44164..44748 | - | 585 | WP_022557751.1 | DUF6012 family protein | - |
| DGN16_RS22670 (DGN16_23680) | 44860..45204 | - | 345 | WP_022557752.1 | hypothetical protein | - |
| DGN16_RS22675 (DGN16_23685) | 45432..45659 | - | 228 | WP_022557753.1 | hypothetical protein | - |
| DGN16_RS22680 (DGN16_23690) | 45711..45983 | - | 273 | WP_022557754.1 | hypothetical protein | - |
| DGN16_RS22685 (DGN16_23700) | 46240..50256 | + | 4017 | WP_099800836.1 | type III secretion system effector avirulence protein AvrBs3 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|