MGE detailed information
MGE type: Prophage MGE length: 107799 bp
Accession: NZ_CP029087 Location: 1565967..1673765 Organism: Staphylococcus aureus strain AR461 Replicon: chromosome
Accession: NZ_CP029087 Location: 1565967..1673765 Organism: Staphylococcus aureus strain AR461 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC47_RS07800 () | 1561290..1561538 | + | 249 | WP_001151997.1 | ferredoxin | - |
| CSC47_RS07805 () | 1561644..1562189 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| CSC47_RS07810 () | 1562591..1563547 | - | 957 | WP_000913227.1 | DUF1672 domain-containing protein | - |
| CSC47_RS15380 () | 1563601..1564006 | - | 406 | Protein_1457 | hypothetical protein | - |
| CSC47_RS07820 () | 1564018..1564914 | - | 897 | WP_000476354.1 | DUF1672 domain-containing protein | - |
| CSC47_RS07825 () | 1564972..1565877 | - | 906 | WP_000476865.1 | DUF1672 domain-containing protein | - |
| CSC47_RS07830 () | 1565967..1566182 | - | 216 | WP_000209712.1 | hypothetical protein | - |
| CSC47_RS07840 () | 1566904..1568358 | - | 1455 | WP_108711057.1 | N-acetylmuramoyl-L-alanine amidase | - |
| CSC47_RS07845 () | 1568369..1568671 | - | 303 | WP_000339141.1 | phage holin | - |
| CSC47_RS07850 () | 1568807..1569106 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| CSC47_RS07855 () | 1569152..1569316 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| CSC47_RS07860 () | 1569309..1569698 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| CSC47_RS07865 () | 1569698..1571164 | - | 1467 | WP_000067130.1 | BppU family phage baseplate upper protein | - |
| CSC47_RS07870 () | 1571164..1573074 | - | 1911 | WP_000429558.1 | minor structural protein | - |
| CSC47_RS07875 () | 1573090..1573380 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| CSC47_RS07880 () | 1573380..1574963 | - | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| CSC47_RS07885 () | 1574972..1575796 | - | 825 | WP_001190533.1 | phage tail family protein | - |
| CSC47_RS07890 () | 1575796..1581972 | - | 6177 | WP_001003416.1 | phage tail tape measure protein | - |
| CSC47_RS07895 () | 1581986..1582144 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| CSC47_RS07900 () | 1582186..1582536 | - | 351 | WP_000589165.1 | hypothetical protein | - |
| CSC47_RS07905 () | 1582594..1583049 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| CSC47_RS07910 () | 1583141..1583782 | - | 642 | WP_000807536.1 | tail protein | - |
| CSC47_RS07915 () | 1583817..1584212 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| CSC47_RS07920 () | 1584213..1584614 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| CSC47_RS07925 () | 1584611..1584943 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| CSC47_RS07930 () | 1584955..1585233 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| CSC47_RS07935 () | 1585302..1586465 | - | 1164 | WP_001142739.1 | phage major capsid protein | - |
| CSC47_RS07940 () | 1586477..1587250 | - | 774 | WP_000061872.1 | Clp protease ClpP | - |
| CSC47_RS07945 () | 1587234..1588472 | - | 1239 | WP_001100661.1 | phage portal protein | - |
| CSC47_RS07950 () | 1588477..1590168 | - | 1692 | WP_000152858.1 | terminase large subunit | - |
| CSC47_RS07955 () | 1590158..1590463 | - | 306 | WP_000778935.1 | P27 family phage terminase small subunit | - |
| CSC47_RS07960 () | 1590588..1590908 | - | 321 | WP_000166884.1 | HNH endonuclease | - |
| CSC47_RS07965 () | 1591065..1591502 | - | 438 | WP_000513704.1 | transcriptional regulator | - |
| CSC47_RS07970 () | 1591515..1592882 | - | 1368 | WP_078065789.1 | DEAD/DEAH box helicase | - |
| CSC47_RS07975 () | 1592863..1593153 | - | 291 | WP_000665205.1 | VRR-NUC domain-containing protein | - |
| CSC47_RS07980 () | 1593287..1593391 | + | 105 | WP_015978074.1 | hypothetical protein | - |
| CSC47_RS07995 () | 1593494..1595940 | - | 2447 | Protein_1490 | virulence-associated E family protein | - |
| CSC47_RS08000 () | 1595993..1596193 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| CSC47_RS08005 () | 1596261..1596413 | - | 153 | WP_000595272.1 | transcriptional activator RinB | - |
| CSC47_RS08010 () | 1596410..1596796 | - | 387 | WP_000592202.1 | hypothetical protein | - |
| CSC47_RS08015 () | 1596793..1596999 | - | 207 | WP_000195835.1 | DUF1381 domain-containing protein | - |
| CSC47_RS08020 () | 1597036..1597566 | - | 531 | WP_042748353.1 | dUTP pyrophosphatase | - |
| CSC47_RS08025 () | 1597559..1597807 | - | 249 | WP_086039500.1 | DUF1024 family protein | - |
| CSC47_RS08030 () | 1597800..1598108 | - | 309 | WP_108711059.1 | hypothetical protein | - |
| CSC47_RS08035 () | 1598105..1598452 | - | 348 | WP_000979209.1 | hypothetical protein | - |
| CSC47_RS08040 () | 1598449..1598850 | - | 402 | WP_000695747.1 | hypothetical protein | - |
| CSC47_RS08045 () | 1598865..1599107 | - | 243 | WP_000132194.1 | hypothetical protein | - |
| CSC47_RS08050 () | 1599122..1599322 | - | 201 | WP_000235324.1 | hypothetical protein | - |
| CSC47_RS08055 () | 1599325..1599582 | - | 258 | WP_031790715.1 | DUF3310 domain-containing protein | - |
| CSC47_RS08060 () | 1599582..1599983 | - | 402 | WP_000113974.1 | PVL family protein | - |
| CSC47_RS08065 () | 1599983..1600168 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| CSC47_RS08070 () | 1600181..1602133 | - | 1953 | WP_078064079.1 | DNA polymerase | - |
| CSC47_RS08075 () | 1602201..1602758 | - | 558 | WP_000645045.1 | DUF2815 family protein | - |
| CSC47_RS08080 () | 1602784..1603950 | - | 1167 | WP_000762530.1 | DUF2800 domain-containing protein | - |
| CSC47_RS08085 () | 1603947..1604309 | - | 363 | WP_108711060.1 | hypothetical protein | - |
| CSC47_RS08090 () | 1604324..1604647 | - | 324 | WP_000174998.1 | hypothetical protein | - |
| CSC47_RS08095 () | 1604726..1604887 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| CSC47_RS08100 () | 1604900..1605163 | - | 264 | WP_001124157.1 | helix-turn-helix domain-containing protein | - |
| CSC47_RS08105 () | 1605188..1605403 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| CSC47_RS08110 () | 1605458..1605823 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| CSC47_RS08115 () | 1605792..1606037 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| CSC47_RS08120 () | 1606104..1606484 | + | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| CSC47_RS08125 () | 1606471..1606668 | - | 198 | WP_001148860.1 | hypothetical protein | - |
| CSC47_RS08130 () | 1606738..1606950 | + | 213 | WP_000362644.1 | hypothetical protein | - |
| CSC47_RS15385 () | 1606991..1607140 | - | 150 | WP_000771849.1 | hypothetical protein | - |
| CSC47_RS08135 () | 1607155..1607598 | - | 444 | WP_000435357.1 | hypothetical protein | - |
| CSC47_RS08140 () | 1607646..1607858 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| CSC47_RS08145 () | 1608010..1608741 | + | 732 | WP_020807995.1 | XRE family transcriptional regulator | - |
| CSC47_RS08150 () | 1608811..1608993 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| CSC47_RS08155 () | 1609029..1609175 | + | 147 | WP_001795334.1 | hypothetical protein | - |
| CSC47_RS08160 () | 1609172..1609786 | - | 615 | WP_000191466.1 | hypothetical protein | - |
| CSC47_RS08165 () | 1609912..1611117 | + | 1206 | WP_000264751.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| CSC47_RS08175 () | 1611962..1613415 | - | 1454 | Protein_1526 | N-acetylmuramoyl-L-alanine amidase | - |
| CSC47_RS08180 () | 1613426..1613728 | - | 303 | WP_000339141.1 | phage holin | - |
| CSC47_RS08185 () | 1613864..1614163 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| CSC47_RS08190 () | 1614209..1614373 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| CSC47_RS08195 () | 1614366..1614755 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| CSC47_RS08200 () | 1614755..1616220 | - | 1466 | Protein_1531 | phage baseplate upper protein | - |
| CSC47_RS08210 () | 1616220..1618130 | - | 1911 | WP_000429558.1 | minor structural protein | - |
| CSC47_RS08215 () | 1618146..1618436 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| CSC47_RS08220 () | 1618436..1620018 | - | 1583 | Protein_1534 | phage tail protein | - |
| CSC47_RS08225 () | 1620027..1620849 | - | 823 | Protein_1535 | phage tail family protein | - |
| CSC47_RS15390 () | 1620849..1627011 | - | 6163 | Protein_1536 | phage tail tape measure protein | - |
| CSC47_RS08240 () | 1627025..1627182 | - | 158 | Protein_1537 | hypothetical protein | - |
| CSC47_RS08245 () | 1627224..1627574 | - | 351 | WP_000589165.1 | hypothetical protein | - |
| CSC47_RS08250 () | 1627632..1628087 | - | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| CSC47_RS08255 () | 1628179..1628820 | - | 642 | WP_000807536.1 | tail protein | - |
| CSC47_RS08260 () | 1628855..1629250 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| CSC47_RS08265 () | 1629251..1629652 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| CSC47_RS08270 () | 1629649..1629981 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| CSC47_RS08275 () | 1629993..1630271 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| CSC47_RS08280 () | 1630340..1631502 | - | 1163 | Protein_1545 | phage major capsid protein | - |
| CSC47_RS08285 () | 1631514..1632287 | - | 774 | WP_000061872.1 | Clp protease ClpP | - |
| CSC47_RS08290 () | 1632271..1633507 | - | 1237 | Protein_1547 | phage portal protein | - |
| CSC47_RS08295 () | 1633512..1635202 | - | 1691 | Protein_1548 | terminase large subunit | - |
| CSC47_RS08300 () | 1635192..1635497 | - | 306 | WP_000778935.1 | P27 family phage terminase small subunit | - |
| CSC47_RS08305 () | 1635620..1635940 | - | 321 | WP_000166884.1 | HNH endonuclease | - |
| CSC47_RS08310 () | 1636097..1636532 | - | 436 | Protein_1551 | transcriptional regulator | - |
| CSC47_RS08315 () | 1636545..1637911 | - | 1367 | Protein_1552 | DEAD/DEAH box helicase | - |
| CSC47_RS08320 () | 1637892..1638182 | - | 291 | WP_000665205.1 | VRR-NUC domain-containing protein | - |
| CSC47_RS08325 () | 1638316..1638420 | + | 105 | WP_015978074.1 | hypothetical protein | - |
| CSC47_RS15395 () | 1638523..1640966 | - | 2444 | Protein_1555 | virulence-associated E family protein | - |
| CSC47_RS08360 () | 1641019..1641219 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| CSC47_RS08365 () | 1641287..1641400 | - | 114 | WP_001819903.1 | transcriptional regulator | - |
| CSC47_RS08370 () | 1641435..1641821 | - | 387 | WP_000592202.1 | hypothetical protein | - |
| CSC47_RS08375 () | 1641818..1642024 | - | 207 | WP_000195835.1 | DUF1381 domain-containing protein | - |
| CSC47_RS08380 () | 1642061..1642591 | - | 531 | WP_042748353.1 | dUTP pyrophosphatase | - |
| CSC47_RS08385 () | 1642584..1642832 | - | 249 | WP_086039500.1 | DUF1024 family protein | - |
| CSC47_RS08390 () | 1642825..1643133 | - | 309 | WP_108711059.1 | hypothetical protein | - |
| CSC47_RS08395 () | 1643130..1643477 | - | 348 | WP_000979209.1 | hypothetical protein | - |
| CSC47_RS08400 () | 1643474..1643875 | - | 402 | WP_000695747.1 | hypothetical protein | - |
| CSC47_RS08405 () | 1643890..1644132 | - | 243 | WP_000132194.1 | hypothetical protein | - |
| CSC47_RS08410 () | 1644147..1644347 | - | 201 | WP_000235324.1 | hypothetical protein | - |
| CSC47_RS08415 () | 1644350..1644607 | - | 258 | WP_031790715.1 | DUF3310 domain-containing protein | - |
| CSC47_RS08420 () | 1644607..1645008 | - | 402 | WP_000113974.1 | PVL family protein | - |
| CSC47_RS08425 () | 1645008..1645193 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| CSC47_RS08430 () | 1645206..1647158 | - | 1953 | WP_078064079.1 | DNA polymerase | - |
| CSC47_RS08435 () | 1647226..1647783 | - | 558 | WP_000645045.1 | DUF2815 family protein | - |
| CSC47_RS08440 () | 1647809..1648975 | - | 1167 | WP_000762530.1 | DUF2800 domain-containing protein | - |
| CSC47_RS08445 () | 1648972..1649334 | - | 363 | WP_108711060.1 | hypothetical protein | - |
| CSC47_RS08450 () | 1649349..1649672 | - | 324 | WP_000174998.1 | hypothetical protein | - |
| CSC47_RS08455 () | 1649751..1649912 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| CSC47_RS08460 () | 1649925..1650188 | - | 264 | WP_001124157.1 | helix-turn-helix domain-containing protein | - |
| CSC47_RS08465 () | 1650213..1650428 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| CSC47_RS08470 () | 1650483..1650848 | + | 366 | WP_001128433.1 | hypothetical protein | - |
| CSC47_RS08475 () | 1650817..1651061 | - | 245 | Protein_1579 | DUF2829 domain-containing protein | - |
| CSC47_RS08480 () | 1651128..1651508 | + | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| CSC47_RS08485 () | 1651495..1651692 | - | 198 | WP_001148860.1 | hypothetical protein | - |
| CSC47_RS08490 () | 1651762..1651974 | + | 213 | WP_000362644.1 | hypothetical protein | - |
| CSC47_RS15400 () | 1652015..1652164 | - | 150 | WP_000771849.1 | hypothetical protein | - |
| CSC47_RS08495 () | 1652179..1652622 | - | 444 | WP_000435357.1 | hypothetical protein | - |
| CSC47_RS08500 () | 1652670..1652882 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| CSC47_RS08505 () | 1653034..1653765 | + | 732 | WP_020807995.1 | XRE family transcriptional regulator | - |
| CSC47_RS08510 () | 1653835..1654017 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| CSC47_RS08515 () | 1654053..1654199 | + | 147 | WP_001795334.1 | hypothetical protein | - |
| CSC47_RS08520 () | 1654196..1654810 | - | 615 | WP_000191466.1 | hypothetical protein | - |
| CSC47_RS08525 () | 1654936..1656141 | + | 1206 | WP_000264751.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| CSC47_RS08530 () | 1656184..1658211 | - | 2028 | WP_001817850.1 | hypothetical protein | - |
| CSC47_RS08535 () | 1658204..1659130 | - | 927 | WP_001557355.1 | DUF1672 domain-containing protein | - |
| CSC47_RS08540 () | 1659374..1661125 | - | 1752 | WP_000987774.1 | two-component system sensor histidine kinase SrrB | - |
| CSC47_RS08545 () | 1661106..1661831 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| CSC47_RS08550 () | 1661964..1662701 | - | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| CSC47_RS08555 () | 1662694..1663236 | - | 543 | WP_000368656.1 | SMC-Scp complex subunit ScpB | - |
| CSC47_RS08560 () | 1663229..1663960 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| CSC47_RS08565 () | 1664052..1664558 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| CSC47_RS08570 () | 1664636..1665523 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CSC47_RS08575 () | 1665572..1666021 | - | 450 | WP_000392691.1 | transcriptional repressor | - |
| CSC47_RS08580 () | 1666126..1666668 | - | 543 | WP_000365240.1 | NUDIX hydrolase | - |
| CSC47_RS08585 () | 1666750..1667657 | + | 908 | Protein_1602 | aldo/keto reductase | - |
| CSC47_RS08590 () | 1667873..1668121 | - | 249 | WP_000995800.1 | hypothetical protein | - |
| CSC47_RS08595 () | 1668137..1668892 | - | 756 | WP_000678232.1 | SDR family oxidoreductase | - |
| CSC47_RS08600 () | 1669034..1669849 | + | 816 | WP_000779749.1 | pyrroline-5-carboxylate reductase | - |
| CSC47_RS08605 () | 1669952..1670872 | - | 921 | WP_000454063.1 | ribonuclease Z | - |
| CSC47_RS08610 () | 1671185..1672669 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| CSC47_RS08615 () | 1672899..1673765 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
| CSC47_RS08620 () | 1673847..1675496 | - | 1650 | WP_001041912.1 | alpha-glucosidase | - |
| CSC47_RS08625 () | 1675512..1676531 | - | 1020 | WP_000256319.1 | LacI family DNA-binding transcriptional regulator | - |
| CSC47_RS08630 () | 1676532..1676786 | - | 255 | WP_001792107.1 | hypothetical protein | - |
| CSC47_RS08635 () | 1676725..1677096 | - | 372 | WP_000413436.1 | VOC family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|