MGE detailed information
MGE type: Prophage MGE length: 53716 bp
Accession: NZ_CP029086 Location: 559515..613230 Organism: Staphylococcus aureus strain AR462 Replicon: chromosome
Accession: NZ_CP029086 Location: 559515..613230 Organism: Staphylococcus aureus strain AR462 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC48_RS03020 () | 556019..556309 | - | 291 | WP_000671712.1 | MAP domain-containing protein | - |
| CSC48_RS03025 () | 556324..557754 | - | 1431 | WP_001557458.1 | extracellular adherence protein Eap/Map | - |
| CSC48_RS03030 () | 558140..558390 | + | 251 | Protein_513 | sphingomyelin phosphodiesterase | - |
| CSC48_RS03035 () | 558712..558891 | + | 180 | WP_000669791.1 | hypothetical protein | - |
| CSC48_RS03045 () | 559202..559462 | + | 261 | WP_001791826.1 | hypothetical protein | - |
| CSC48_RS03050 () | 559515..559865 | - | 351 | WP_000702263.1 | Staphylococcal complement inhibitor | VF |
| CSC48_RS03055 () | 560375..560710 | - | 336 | Protein_517 | SH3 domain-containing protein | - |
| CSC48_RS03075 () | 561361..561852 | - | 492 | WP_000920038.1 | Staphylokinase | VF |
| CSC48_RS03080 () | 562043..562798 | - | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSC48_RS03085 () | 562810..563064 | - | 255 | WP_000611512.1 | phage holin | - |
| CSC48_RS03090 () | 563116..563223 | + | 108 | WP_031762631.1 | hypothetical protein | - |
| - () | 563145..563284 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 563145..563284 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 563145..563284 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 563145..563284 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| CSC48_RS03095 () | 563276..563452 | - | 177 | WP_011447039.1 | putative holin-like toxin | Toxin Detail |
| CSC48_RS03100 () | 563655..564428 | - | 774 | WP_025174055.1 | Enterotoxin type E | VF |
| CSC48_RS03105 () | 564849..565223 | - | 375 | WP_000340977.1 | hypothetical protein | - |
| CSC48_RS03110 () | 565279..565566 | - | 288 | WP_001040255.1 | hypothetical protein | - |
| CSC48_RS03115 () | 565613..565765 | - | 153 | WP_000654329.1 | hypothetical protein | - |
| CSC48_RS03120 () | 565755..569540 | - | 3786 | WP_108720532.1 | hypothetical protein | - |
| CSC48_RS03125 () | 569556..571040 | - | 1485 | WP_000567408.1 | phage tail family protein | - |
| CSC48_RS03130 () | 571037..575566 | - | 4530 | WP_001796452.1 | phage tail tape measure protein | - |
| CSC48_RS03135 () | 575811..576161 | - | 351 | WP_001096355.1 | hypothetical protein | - |
| CSC48_RS03140 () | 576211..576435 | - | 225 | WP_071621395.1 | Ig-like domain-containing protein | - |
| CSC48_RS03145 () | 576477..577121 | - | 645 | WP_000268734.1 | phage tail protein | - |
| CSC48_RS03150 () | 577122..577529 | - | 408 | WP_000565498.1 | hypothetical protein | - |
| CSC48_RS03155 () | 577526..577930 | - | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| CSC48_RS03160 () | 577927..578289 | - | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSC48_RS03165 () | 578273..578557 | - | 285 | WP_000150938.1 | phage head-tail connector protein | - |
| CSC48_RS03170 () | 578547..578831 | - | 285 | WP_000238236.1 | hypothetical protein | - |
| CSC48_RS03175 () | 578851..579996 | - | 1146 | WP_000154559.1 | phage major capsid protein | - |
| CSC48_RS03180 () | 580020..580757 | - | 738 | WP_000642727.1 | Clp protease ClpP | - |
| CSC48_RS03185 () | 580741..581928 | - | 1188 | WP_000025274.1 | phage portal protein | - |
| CSC48_RS03190 () | 581944..583605 | - | 1662 | WP_000625088.1 | terminase large subunit | - |
| CSC48_RS03195 () | 583602..583946 | - | 345 | WP_000402904.1 | hypothetical protein | - |
| CSC48_RS03200 () | 584076..584375 | - | 300 | WP_000988336.1 | HNH endonuclease | - |
| CSC48_RS03205 () | 584607..585023 | - | 417 | WP_000590122.1 | hypothetical protein | - |
| CSC48_RS03210 () | 585051..585251 | - | 201 | WP_000265043.1 | DUF1514 family protein | - |
| CSC48_RS03215 () | 585251..585400 | - | 150 | WP_000595264.1 | transcriptional activator RinB | - |
| CSC48_RS03220 () | 585397..585783 | - | 387 | WP_000592207.1 | hypothetical protein | - |
| CSC48_RS03225 () | 585780..585986 | - | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| CSC48_RS03230 () | 585983..586228 | - | 246 | WP_001282074.1 | hypothetical protein | - |
| CSC48_RS03235 () | 586265..586801 | - | 537 | WP_001066448.1 | dUTP diphosphatase | - |
| CSC48_RS14385 () | 586794..586964 | - | 171 | WP_000714403.1 | hypothetical protein | - |
| CSC48_RS03240 () | 586951..587205 | - | 255 | WP_001065097.1 | DUF1024 family protein | - |
| CSC48_RS03245 () | 587220..587462 | - | 243 | WP_000131370.1 | hypothetical protein | - |
| CSC48_RS03250 () | 587466..587834 | - | 369 | WP_000101288.1 | hypothetical protein | - |
| CSC48_RS03255 () | 587847..588155 | - | 309 | WP_078065130.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC48_RS03260 () | 588258..588476 | - | 219 | WP_000338530.1 | hypothetical protein | - |
| CSC48_RS03265 () | 588483..589376 | - | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| CSC48_RS03270 () | 589406..589876 | - | 471 | WP_000934760.1 | single-stranded DNA-binding protein | - |
| CSC48_RS03275 () | 589877..590494 | - | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| CSC48_RS03280 () | 590575..591495 | - | 921 | WP_000138475.1 | recombinase RecT | - |
| CSC48_RS03285 () | 591497..593440 | - | 1944 | WP_000700555.1 | AAA family ATPase | - |
| CSC48_RS03290 () | 593449..593712 | - | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC48_RS03295 () | 593721..593981 | - | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC48_RS03300 () | 593986..594288 | - | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC48_RS14390 () | 594381..594542 | - | 162 | WP_000066025.1 | DUF1270 domain-containing protein | - |
| CSC48_RS03305 () | 594540..594854 | - | 315 | Protein_566 | DUF771 domain-containing protein | - |
| CSC48_RS03310 () | 594884..595102 | - | 219 | WP_000993182.1 | hypothetical protein | - |
| CSC48_RS03315 () | 595133..595327 | - | 195 | WP_000388066.1 | hypothetical protein | - |
| CSC48_RS03320 () | 595344..596095 | - | 752 | Protein_569 | phage antirepressor KilAC domain-containing protein | - |
| CSC48_RS03325 () | 596146..596475 | + | 330 | WP_000128907.1 | hypothetical protein | - |
| CSC48_RS03330 () | 596464..596679 | - | 216 | WP_001025404.1 | DUF2829 domain-containing protein | - |
| CSC48_RS03335 () | 596695..596958 | - | 264 | WP_000854072.1 | helix-turn-helix domain-containing protein | - |
| CSC48_RS03340 () | 596955..597128 | - | 174 | WP_001801500.1 | hypothetical protein | - |
| CSC48_RS03345 () | 597091..597804 | + | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| CSC48_RS03350 () | 597820..598752 | + | 933 | WP_000759682.1 | ATP-dependent helicase | - |
| CSC48_RS03355 () | 598758..599099 | + | 342 | WP_000591749.1 | hypothetical protein | - |
| CSC48_RS03360 () | 599303..599485 | + | 183 | WP_000705248.1 | hypothetical protein | - |
| CSC48_RS03365 () | 599585..600049 | + | 465 | WP_000825947.1 | hypothetical protein | - |
| CSC48_RS03370 () | 600108..601145 | + | 1038 | WP_000857191.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC48_RS03375 () | 601202..602026 | + | 825 | Protein_580 | Phospholipase C | VF |
| CSC48_RS03380 () | 602264..603280 | - | 1017 | WP_000595392.1 | putative leukocidin-like protein 1 | VF |
| CSC48_RS03385 () | 603302..604357 | - | 1056 | WP_000791411.1 | putative leukocidin-like protein 2 | VF |
| CSC48_RS03390 () | 604793..606016 | + | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| CSC48_RS03395 () | 606460..607767 | + | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| CSC48_RS03405 () | 608307..609923 | - | 1617 | WP_000240642.1 | 60 kDa chaperonin | VF |
| CSC48_RS03410 () | 609999..610283 | - | 285 | WP_108720534.1 | co-chaperone GroES | - |
| CSC48_RS03415 () | 610458..611201 | + | 744 | WP_000197635.1 | CPBP family intramembrane metalloprotease | - |
| CSC48_RS03420 () | 611226..612407 | - | 1182 | WP_000120303.1 | hypothetical protein | VF |
| CSC48_RS03425 () | 612604..613230 | + | 627 | WP_000522381.1 | nitroreductase family protein | - |
| CSC48_RS03430 () | 613591..614376 | + | 786 | WP_000867951.1 | carbon-nitrogen family hydrolase | - |
| CSC48_RS03435 () | 614975..615109 | - | 135 | WP_001549197.1 | delta-lysin family phenol-soluble modulin | - |
| CSC48_RS03440 () | 615345..615908 | + | 564 | WP_001105696.1 | accessory gene regulator ArgB-like protein | - |
| CSC48_RS03445 () | 615911..616054 | + | 144 | WP_001094921.1 | cyclic lactone autoinducer peptide | - |
| CSC48_RS03450 () | 616084..617367 | + | 1284 | WP_033855254.1 | sensor histidine kinase | - |
| CSC48_RS03455 () | 617386..618102 | + | 717 | WP_000688492.1 | LytTR family DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|