MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 131296 bp
Accession: NZ_CP028908 Location: 5189261..5320556 Organism: Bradyrhizobium sp. WD16 Replicon: chromosome
Accession: NZ_CP028908 Location: 5189261..5320556 Organism: Bradyrhizobium sp. WD16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB459_RS23905 (DB459_23865) | 5184862..5185371 | - | 510 | WP_253708797.1 | NADH-quinone oxidoreductase subunit B | - |
| DB459_RS23910 (DB459_23870) | 5185490..5185723 | + | 234 | WP_253708800.1 | hypothetical protein | - |
| DB459_RS23915 (DB459_23875) | 5185848..5186540 | + | 693 | WP_253708803.1 | helix-turn-helix domain-containing protein | - |
| DB459_RS23920 (DB459_23880) | 5186752..5187561 | + | 810 | WP_253708806.1 | glycosyltransferase family A protein | - |
| DB459_RS23925 (DB459_23885) | 5188109..5189602 | + | 1494 | WP_253708824.1 | ATP-binding protein | - |
| DB459_RS23930 (DB459_23890) | 5190008..5190412 | + | 405 | WP_253708827.1 | DUF1127 domain-containing protein | - |
| DB459_RS23935 (DB459_23895) | 5191004..5192140 | + | 1137 | WP_253708830.1 | hypothetical protein | - |
| DB459_RS23940 (DB459_23900) | 5192141..5192926 | - | 786 | WP_253708832.1 | hypothetical protein | - |
| DB459_RS23945 (DB459_23905) | 5193286..5193744 | - | 459 | WP_253708835.1 | IS607 family transposase ISLhe9 | Transposase |
| DB459_RS23950 (DB459_23910) | 5193834..5194181 | + | 348 | WP_253708838.1 | antibiotic biosynthesis monooxygenase family protein | - |
| DB459_RS23955 | 5194305..5194526 | + | 222 | WP_253708841.1 | hypothetical protein | - |
| DB459_RS23960 (DB459_23915) | 5194559..5194999 | + | 441 | WP_253708843.1 | DUF2846 domain-containing protein | - |
| DB459_RS23965 (DB459_23920) | 5195168..5195687 | + | 520 | Protein_4756 | N-acetyltransferase | - |
| DB459_RS23970 (DB459_23925) | 5195919..5196461 | - | 543 | WP_253708846.1 | PadR family transcriptional regulator | - |
| DB459_RS23975 (DB459_23930) | 5196540..5196935 | + | 396 | WP_253708849.1 | PaaI family thioesterase | - |
| DB459_RS23980 (DB459_23935) | 5196972..5197307 | - | 336 | WP_253708853.1 | Rieske 2Fe-2S domain-containing protein | - |
| DB459_RS23985 (DB459_23940) | 5197546..5198298 | + | 753 | WP_253708856.1 | hypothetical protein | - |
| DB459_RS23990 (DB459_23945) | 5198535..5199569 | + | 1035 | WP_253708859.1 | alpha/beta hydrolase | - |
| DB459_RS23995 (DB459_23950) | 5199675..5200289 | - | 615 | WP_253708861.1 | FMN-dependent NADH-azoreductase | - |
| DB459_RS24000 (DB459_23955) | 5200387..5201307 | + | 921 | WP_253708864.1 | LysR family transcriptional regulator | - |
| DB459_RS24005 (DB459_23960) | 5201337..5201948 | + | 612 | WP_253708866.1 | isochorismatase family protein | - |
| DB459_RS24010 (DB459_23965) | 5201998..5202450 | + | 453 | WP_253708869.1 | MerR family transcriptional regulator | - |
| DB459_RS24015 (DB459_23970) | 5202377..5202793 | + | 417 | WP_253708872.1 | VOC family protein | - |
| DB459_RS24020 (DB459_23975) | 5202875..5203252 | + | 378 | WP_253708875.1 | cupin domain-containing protein | - |
| DB459_RS24025 (DB459_23980) | 5203310..5203711 | - | 402 | WP_253708877.1 | DUF6157 family protein | - |
| DB459_RS24030 (DB459_23985) | 5203797..5204990 | - | 1194 | WP_253708879.1 | MFS transporter | - |
| DB459_RS24035 (DB459_23990) | 5204914..5205369 | - | 456 | WP_253708881.1 | MerR family transcriptional regulator | - |
| DB459_RS24040 (DB459_23995) | 5205694..5206326 | - | 633 | WP_253708883.1 | NAD(P)H-dependent oxidoreductase | - |
| DB459_RS24045 (DB459_24000) | 5206505..5206909 | + | 405 | WP_253708885.1 | helix-turn-helix domain-containing protein | - |
| DB459_RS24050 (DB459_24005) | 5206987..5207505 | - | 519 | WP_253708888.1 | GNAT family N-acetyltransferase | - |
| DB459_RS24055 (DB459_24010) | 5207793..5208251 | + | 459 | WP_253708890.1 | GyrI-like domain-containing protein | - |
| DB459_RS24060 (DB459_24015) | 5208399..5209232 | + | 834 | WP_253708892.1 | creatininase family protein | - |
| DB459_RS24065 (DB459_24020) | 5209315..5209743 | - | 429 | WP_253708895.1 | MerR family transcriptional regulator | - |
| DB459_RS24070 (DB459_24025) | 5209804..5210616 | - | 813 | WP_253708898.1 | pyridoxal kinase | - |
| DB459_RS24075 (DB459_24030) | 5211052..5211411 | + | 360 | WP_253708900.1 | hypothetical protein | - |
| DB459_RS24080 (DB459_24035) | 5211475..5212128 | + | 654 | WP_253708903.1 | isochorismatase family protein | - |
| DB459_RS24085 (DB459_24040) | 5212248..5212652 | + | 405 | WP_253708907.1 | hypothetical protein | - |
| DB459_RS24090 (DB459_24045) | 5212712..5214964 | + | 2253 | WP_253708910.1 | TonB-dependent receptor | - |
| DB459_RS24095 (DB459_24050) | 5215050..5215967 | + | 918 | WP_253708913.1 | metallo-mystery pair system four-Cys motif protein | - |
| DB459_RS24100 (DB459_24055) | 5215964..5217178 | + | 1215 | WP_253708916.1 | di-heme enzyme | - |
| DB459_RS24105 (DB459_24060) | 5217266..5217769 | + | 504 | WP_253708919.1 | hypothetical protein | - |
| DB459_RS24110 (DB459_24065) | 5217944..5218885 | - | 942 | WP_253708922.1 | hypothetical protein | VF |
| DB459_RS24115 (DB459_24070) | 5218882..5219769 | - | 888 | WP_253708925.1 | alpha/beta hydrolase | - |
| DB459_RS24120 (DB459_24075) | 5219792..5220847 | - | 1056 | WP_253708928.1 | sugar phosphate isomerase/epimerase family protein | - |
| DB459_RS24125 (DB459_24080) | 5220943..5221569 | + | 627 | WP_256519228.1 | TetR/AcrR family transcriptional regulator | - |
| DB459_RS24130 (DB459_24085) | 5221718..5221889 | - | 172 | Protein_4789 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| DB459_RS24135 (DB459_24090) | 5222395..5223693 | - | 1299 | WP_253708933.1 | RNA polymerase sigma factor | - |
| DB459_RS24140 (DB459_24095) | 5223697..5224095 | - | 399 | WP_253708936.1 | YciI family protein | - |
| DB459_RS24145 (DB459_24100) | 5224910..5226883 | - | 1974 | WP_253708939.1 | tetratricopeptide repeat protein | - |
| DB459_RS24150 (DB459_24105) | 5226886..5227146 | - | 261 | WP_253708942.1 | hypothetical protein | - |
| DB459_RS24155 (DB459_24110) | 5227437..5228939 | + | 1503 | WP_253713630.1 | IS21 family transposase ISBj11 | Transposase |
| DB459_RS24160 (DB459_24115) | 5228945..5229760 | + | 816 | WP_253713629.1 | IS21 family transposase ISBj11 | Transposase |
| DB459_RS24165 (DB459_24120) | 5229896..5230222 | - | 327 | WP_253708945.1 | hypothetical protein | - |
| DB459_RS24170 (DB459_24125) | 5230230..5231153 | - | 924 | WP_253708948.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DB459_RS24175 (DB459_24130) | 5231150..5231470 | - | 321 | WP_253708951.1 | helix-turn-helix transcriptional regulator | - |
| DB459_RS24180 (DB459_24135) | 5231657..5232904 | + | 1248 | WP_253708954.1 | nucleotidyltransferase | - |
| DB459_RS24185 (DB459_24140) | 5232907..5233356 | + | 450 | WP_253708956.1 | hypothetical protein | - |
| DB459_RS24190 (DB459_24145) | 5233353..5234387 | + | 1035 | WP_256519402.1 | CBASS cGAMP-activated phospholipase | - |
| DB459_RS24195 (DB459_24150) | 5234410..5234850 | - | 441 | WP_253708961.1 | hypothetical protein | - |
| DB459_RS24200 (DB459_24155) | 5235031..5235654 | + | 624 | WP_253708964.1 | hypothetical protein | - |
| DB459_RS24205 (DB459_24160) | 5235770..5235979 | + | 210 | WP_253708967.1 | hypothetical protein | - |
| DB459_RS24210 (DB459_24165) | 5235976..5238432 | + | 2457 | WP_253708970.1 | AAA family ATPase | - |
| DB459_RS24215 (DB459_24170) | 5238564..5239013 | - | 450 | WP_253708972.1 | hypothetical protein | - |
| DB459_RS24220 (DB459_24175) | 5239187..5240470 | + | 1284 | WP_253707432.1 | IS256 family transposase ISMdi13 | Transposase |
| DB459_RS24225 (DB459_24180) | 5240467..5240718 | - | 252 | WP_253708975.1 | hypothetical protein | - |
| DB459_RS24230 (DB459_24185) | 5240776..5242116 | - | 1341 | WP_253708978.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| DB459_RS24235 (DB459_24190) | 5242113..5242982 | - | 870 | WP_253708983.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| DB459_RS24240 (DB459_24195) | 5242975..5243592 | - | 618 | WP_253708985.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| DB459_RS24245 (DB459_24200) | 5243724..5243951 | - | 228 | WP_253708988.1 | DUF2274 domain-containing protein | - |
| DB459_RS24250 (DB459_24205) | 5243953..5245176 | - | 1224 | WP_253708991.1 | hypothetical protein | VF |
| DB459_RS24255 (DB459_24210) | 5245173..5246216 | - | 1044 | WP_253708993.1 | P-type conjugative transfer protein TrbG | - |
| DB459_RS24260 (DB459_24215) | 5246213..5246896 | - | 684 | WP_253708996.1 | conjugal transfer protein TrbF | - |
| DB459_RS24265 (DB459_24220) | 5246896..5248221 | - | 1326 | WP_253708999.1 | P-type conjugative transfer protein TrbL | - |
| DB459_RS24270 (DB459_24225) | 5248224..5248493 | - | 270 | WP_253709002.1 | putative entry exclusion protein TrbK-alt | - |
| DB459_RS24275 (DB459_24230) | 5248504..5249262 | - | 759 | WP_253709004.1 | P-type conjugative transfer protein TrbJ | - |
| DB459_RS24280 (DB459_24235) | 5249259..5251697 | - | 2439 | WP_253709007.1 | conjugal transfer protein TrbE | - |
| DB459_RS24285 (DB459_24240) | 5251710..5251991 | - | 282 | WP_253709010.1 | VirB3 family type IV secretion system protein | - |
| DB459_RS24290 (DB459_24245) | 5251991..5252284 | - | 294 | WP_253713684.1 | TrbC/VirB2 family protein | - |
| DB459_RS24295 (DB459_24250) | 5252320..5253327 | - | 1008 | WP_253709013.1 | hypothetical protein | VF |
| DB459_RS24300 (DB459_24255) | 5253495..5253980 | - | 486 | WP_253709016.1 | Rrf2 family transcriptional regulator | - |
| DB459_RS24305 (DB459_24260) | 5254084..5254551 | + | 468 | WP_253713685.1 | carboxymuconolactone decarboxylase family protein | - |
| DB459_RS24310 (DB459_24265) | 5254612..5255070 | + | 459 | WP_253709019.1 | IS607 family transposase ISAfe11 | Transposase |
| DB459_RS24315 (DB459_24270) | 5254994..5256181 | + | 1188 | WP_253709022.1 | MFS transporter | - |
| DB459_RS24320 (DB459_24275) | 5256178..5256615 | - | 438 | WP_253709026.1 | CopG family transcriptional regulator | - |
| DB459_RS24325 (DB459_24280) | 5256624..5258615 | - | 1992 | WP_253709028.1 | hypothetical protein | VF |
| DB459_RS24330 (DB459_24285) | 5258869..5259783 | + | 915 | WP_253709031.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| DB459_RS24335 (DB459_24290) | 5259877..5260176 | - | 300 | WP_253709034.1 | DUF2285 domain-containing protein | - |
| DB459_RS24340 (DB459_24295) | 5260386..5260607 | + | 222 | WP_253709036.1 | helix-turn-helix transcriptional regulator | - |
| DB459_RS24345 (DB459_24300) | 5260590..5261531 | - | 942 | WP_253709037.1 | hypothetical protein | VF |
| DB459_RS24350 (DB459_24305) | 5261804..5263051 | - | 1248 | WP_253709039.1 | M56 family metallopeptidase | - |
| DB459_RS24355 (DB459_24310) | 5263044..5263406 | - | 363 | WP_256519229.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| DB459_RS24360 (DB459_24315) | 5263515..5265566 | - | 2052 | WP_253709043.1 | DUF3363 domain-containing protein | - |
| DB459_RS24365 (DB459_24325) | 5265859..5266788 | - | 930 | WP_253709046.1 | lytic transglycosylase domain-containing protein | - |
| DB459_RS24370 (DB459_24330) | 5266793..5267128 | - | 336 | WP_253709049.1 | DUF736 domain-containing protein | - |
| DB459_RS24375 (DB459_24335) | 5267174..5267719 | - | 546 | WP_253709052.1 | S26 family signal peptidase | - |
| DB459_RS24380 (DB459_24340) | 5267716..5268237 | - | 522 | WP_253709055.1 | DUF2840 domain-containing protein | - |
| DB459_RS24385 (DB459_24345) | 5268234..5268485 | - | 252 | WP_253709058.1 | hypothetical protein | - |
| DB459_RS24390 (DB459_24350) | 5268482..5269135 | - | 654 | WP_253709061.1 | hypothetical protein | VF |
| DB459_RS24395 (DB459_24355) | 5269132..5270202 | - | 1071 | WP_253709064.1 | replication initiator protein A | - |
| DB459_RS24400 (DB459_24360) | 5270203..5270472 | - | 270 | WP_073625759.1 | helix-turn-helix domain-containing protein | - |
| DB459_RS24405 (DB459_24365) | 5270628..5271182 | - | 555 | WP_253709066.1 | DUF2285 domain-containing protein | - |
| DB459_RS24410 (DB459_24370) | 5271163..5271417 | - | 255 | WP_253709070.1 | DUF6499 domain-containing protein | - |
| DB459_RS24415 (DB459_24375) | 5271714..5272554 | - | 841 | Protein_4846 | DUF945 domain-containing protein | - |
| DB459_RS24420 (DB459_24380) | 5272931..5273245 | - | 315 | WP_253709073.1 | DUF736 domain-containing protein | - |
| DB459_RS24425 | 5273789..5273872 | + | 84 | Protein_4848 | DUF2190 family protein | - |
| DB459_RS24430 (DB459_24390) | 5274052..5274288 | + | 237 | WP_253713757.1 | hypothetical protein | - |
| DB459_RS24435 | 5274322..5275218 | + | 897 | WP_253709075.1 | hypothetical protein | - |
| DB459_RS24440 | 5275247..5275483 | + | 237 | Protein_4851 | DUF6441 family protein | - |
| DB459_RS24445 (DB459_24395) | 5275625..5277643 | - | 2019 | WP_253709078.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DB459_RS24450 (DB459_24400) | 5278057..5278410 | - | 354 | WP_253713686.1 | DUF2958 domain-containing protein | - |
| DB459_RS24455 (DB459_24405) | 5278620..5279540 | - | 921 | WP_253713687.1 | hypothetical protein | VF |
| DB459_RS24460 (DB459_24410) | 5279722..5280843 | + | 1122 | WP_253709081.1 | MFS transporter | - |
| DB459_RS24465 (DB459_24415) | 5280861..5282036 | + | 1176 | WP_253709084.1 | hypothetical protein | VF |
| DB459_RS24470 (DB459_24420) | 5282285..5282551 | + | 267 | WP_253713688.1 | AlpA family phage regulatory protein | - |
| DB459_RS24475 (DB459_24425) | 5282702..5285146 | + | 2445 | WP_253709086.1 | SIR2 family protein | - |
| DB459_RS24480 (DB459_24430) | 5285651..5286907 | - | 1257 | WP_253709090.1 | hypothetical protein ; Integrase | Integrase |
| DB459_RS24485 (DB459_24435) | 5287224..5288828 | - | 1605 | WP_253709094.1 | glutamine-hydrolyzing GMP synthase | - |
| DB459_RS24490 (DB459_24440) | 5288954..5289325 | + | 372 | WP_253709097.1 | nuclear transport factor 2 family protein | - |
| DB459_RS24495 (DB459_24445) | 5289398..5290699 | - | 1302 | WP_253709099.1 | RsmB/NOP family class I SAM-dependent RNA methyltransferase | - |
| DB459_RS24500 (DB459_24450) | 5290745..5291110 | - | 366 | WP_253709101.1 | hypothetical protein | - |
| DB459_RS24505 (DB459_24455) | 5291438..5292469 | - | 1032 | WP_253709103.1 | hypothetical protein | VF |
| DB459_RS24510 (DB459_24460) | 5292658..5294151 | - | 1494 | WP_253709105.1 | IMP dehydrogenase | - |
| DB459_RS24515 (DB459_24465) | 5294627..5296099 | + | 1473 | WP_253709107.1 | DHA2 family efflux MFS transporter permease subunit | - |
| DB459_RS24520 (DB459_24470) | 5296125..5296814 | - | 690 | WP_253709109.1 | RlmE family RNA methyltransferase | - |
| DB459_RS24525 (DB459_24475) | 5296901..5297974 | - | 1074 | WP_253709124.1 | Ppx/GppA phosphatase family protein | - |
| DB459_RS24530 (DB459_24480) | 5298477..5298986 | + | 510 | WP_253709126.1 | YaiI/YqxD family protein | - |
| DB459_RS24535 (DB459_24485) | 5299004..5300821 | + | 1818 | WP_253709128.1 | hypothetical protein | VF |
| DB459_RS24540 (DB459_24490) | 5301044..5301493 | + | 450 | WP_253709131.1 | cytochrome c | - |
| DB459_RS24545 (DB459_24495) | 5301554..5302456 | - | 903 | WP_253709133.1 | LysR family transcriptional regulator | - |
| DB459_RS24550 (DB459_24500) | 5302551..5303756 | + | 1206 | WP_253709134.1 | MFS transporter | - |
| DB459_RS24555 (DB459_24505) | 5303823..5305049 | - | 1227 | WP_253713689.1 | TIGR03862 family flavoprotein | - |
| DB459_RS24560 (DB459_24510) | 5305213..5305492 | - | 280 | Protein_4875 | hypothetical protein | - |
| DB459_RS24565 (DB459_24515) | 5305569..5307224 | - | 1656 | WP_253709136.1 | OFA family MFS transporter | - |
| DB459_RS24570 (DB459_24520) | 5307277..5307501 | - | 225 | WP_253709138.1 | formate dehydrogenase subunit delta | - |
| DB459_RS24575 (DB459_24525) | 5307491..5308312 | - | 822 | WP_253709141.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| DB459_RS24580 (DB459_24530) | 5308314..5311187 | - | 2874 | WP_253709143.1 | formate dehydrogenase subunit alpha | - |
| DB459_RS24585 (DB459_24535) | 5311199..5312770 | - | 1572 | WP_253709146.1 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein | - |
| DB459_RS24590 (DB459_24540) | 5312767..5313273 | - | 507 | WP_253709148.1 | formate dehydrogenase subunit gamma | - |
| DB459_RS24595 (DB459_24545) | 5313484..5314401 | - | 918 | WP_253709151.1 | hypothetical protein | VF |
| DB459_RS24600 (DB459_24550) | 5314457..5314918 | - | 462 | WP_253709154.1 | MaoC family dehydratase | - |
| DB459_RS24605 (DB459_24555) | 5314985..5315881 | - | 897 | WP_253709157.1 | LysR family transcriptional regulator | - |
| DB459_RS24610 (DB459_24560) | 5316028..5317758 | - | 1731 | WP_253709160.1 | AMP-binding protein | - |
| DB459_RS24615 (DB459_24565) | 5317758..5318657 | - | 900 | WP_253709162.1 | 3-hydroxyisobutyrate dehydrogenase | - |
| DB459_RS24620 (DB459_24570) | 5318721..5319788 | - | 1068 | WP_253709165.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DB459_RS24625 (DB459_24575) | 5319785..5320930 | - | 1146 | WP_253709167.1 | isobutyryl-CoA dehydrogenase | - |
| DB459_RS24630 (DB459_24580) | 5320944..5322440 | - | 1497 | WP_253709169.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
| DB459_RS24635 (DB459_24585) | 5322528..5323454 | + | 927 | WP_253709171.1 | LysR family transcriptional regulator | - |
| DB459_RS24640 (DB459_24590) | 5323528..5324220 | - | 693 | WP_253709173.1 | TetR/AcrR family transcriptional regulator | - |
| DB459_RS24645 | 5324404..5324580 | + | 177 | WP_253709176.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|