MGE detailed information
MGE type: Prophage MGE length: 61184 bp
Accession: NZ_CP028762 Location: 2372699..2433882 Organism: Escherichia coli strain A12 Replicon: chromosome
Accession: NZ_CP028762 Location: 2372699..2433882 Organism: Escherichia coli strain A12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY65_RS11460 (2368598) | 2368598..2369818 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| AOY65_RS11465 (2369943) | 2369943..2370638 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| AOY65_RS11470 (2370591) | 2370591..2371883 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| AOY65_RS11475 (2372042) | 2372042..2372656 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| AOY65_RS11480 (2372699) | 2372699..2373553 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| AOY65_RS11485 (2373555) | 2373555..2374172 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| AOY65_RS11490 (2374183) | 2374183..2376606 | - | 2424 | WP_001433342.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| AOY65_RS11495 (2376667) | 2376667..2379093 | - | 2427 | WP_047083792.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| AOY65_RS11500 (2379292) | 2379292..2379597 | - | 306 | WP_001307224.1 | DUF1161 domain-containing protein | - |
| AOY65_RS11505 (2379705) | 2379705..2380415 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| AOY65_RS11510 (2380418) | 2380418..2380978 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| AOY65_RS11515 (2381013) | 2381013..2381354 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| AOY65_RS11520 (2381489) | 2381489..2381815 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| AOY65_RS11525 (2382021) | 2382021..2383235 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| AOY65_RS11530 (2383247) | 2383247..2384266 | + | 1020 | WP_000836072.1 | Zn-dependent oxidoreductase | - |
| AOY65_RS11535 (2384454) | 2384454..2385734 | - | 1281 | WP_000877001.1 | site-specific integrase | - |
| AOY65_RS11540 (2385769) | 2385769..2386020 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| AOY65_RS11545 (2386093) | 2386093..2388367 | - | 2275 | Protein_2262 | 3'-5' exoribonuclease | - |
| AOY65_RS11550 (2388460) | 2388460..2388642 | - | 183 | WP_240758478.1 | DUF1482 family protein | - |
| AOY65_RS11560 (2388803) | 2388803..2388877 | - | 75 | Protein_2264 | lysis protein YdfD | - |
| AOY65_RS11565 (2388874) | 2388874..2389062 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AOY65_RS11570 (2389614) | 2389614..2389832 | - | 219 | WP_001171942.1 | protein YdfC | - |
| AOY65_RS23670 (2389862) | 2389862..2389990 | - | 129 | WP_000344964.1 | protein YdfB | - |
| AOY65_RS11575 (2389992) | 2389992..2390147 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| AOY65_RS11580 (2390314) | 2390314..2390721 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| AOY65_RS11585 (2390805) | 2390805..2391035 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| AOY65_RS11590 (2391019) | 2391019..2391540 | + | 522 | WP_073547405.1 | toxin YdaT family protein | - |
| AOY65_RS11595 (2391521) | 2391521..2392486 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| AOY65_RS11600 (2392527) | 2392527..2392949 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| AOY65_RS11605 (2392946) | 2392946..2393435 | + | 490 | Protein_2274 | class I SAM-dependent methyltransferase | - |
| AOY65_RS11610 (2393913) | 2393913..2394334 | + | 422 | Protein_2275 | hypothetical protein | - |
| AOY65_RS11615 (2394990) | 2394990..2396060 | + | 1071 | Protein_2276 | ISNCY family transposase | - |
| AOY65_RS11620 (2396133) | 2396133..2396282 | + | 150 | WP_011443592.1 | protein YdfW | - |
| AOY65_RS11625 (2396719) | 2396719..2397051 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| AOY65_RS11630 (2397254) | 2397254..2397559 | - | 306 | WP_001326990.1 | protein YdfV | - |
| AOY65_RS11635 (2397584) | 2397584..2397823 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AOY65_RS11640 (2397823) | 2397823..2398110 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AOY65_RS11645 (2398182) | 2398182..2398337 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY65_RS11650 (2398554) | 2398554..2398805 | + | 252 | WP_000980994.1 | protein Rem | - |
| AOY65_RS11655 (2398872) | 2398872..2399150 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY65_RS11660 (2399152) | 2399152..2400201 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY65_RS11665 (2400215) | 2400215..2400967 | + | 753 | WP_001047135.1 | antitermination protein | - |
| AOY65_RS11670 (2401245) | 2401245..2401334 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY65_RS11675 (2401389) | 2401389..2401601 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY65_RS11680 (2401902) | 2401902..2402117 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY65_RS11685 (2402481) | 2402481..2402651 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY65_RS11690 (2402871) | 2402871..2403086 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AOY65_RS11695 (2403091) | 2403091..2403402 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| AOY65_RS11700 (2403399) | 2403399..2403932 | + | 534 | WP_001092971.1 | lysozyme | - |
| AOY65_RS11705 (2403929) | 2403929..2404426 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AOY65_RS11710 (2404789) | 2404789..2405001 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AOY65_RS11715 (2405012) | 2405012..2405200 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| AOY65_RS11720 (2405203) | 2405203..2405268 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| AOY65_RS11725 (2405273) | 2405273..2405503 | + | 231 | WP_000720962.1 | protein YnfN | - |
| AOY65_RS11730 (2405675) | 2405675..2405848 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| AOY65_RS11735 (2406000) | 2406000..2406410 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| AOY65_RS11740 (2406468) | 2406468..2406701 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| AOY65_RS11745 (2407090) | 2407090..2407635 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| AOY65_RS11750 (2407610) | 2407610..2409535 | + | 1926 | WP_032292250.1 | phage terminase large subunit family protein | - |
| AOY65_RS11755 (2409532) | 2409532..2409738 | + | 207 | WP_000198149.1 | gpW family protein | - |
| AOY65_RS11760 (2409735) | 2409735..2411336 | + | 1602 | WP_001316944.1 | phage portal protein | - |
| AOY65_RS11765 (2411317) | 2411317..2412636 | + | 1320 | WP_000123271.1 | S49 family peptidase | - |
| AOY65_RS11770 (2412646) | 2412646..2412978 | + | 333 | WP_001299443.1 | head decoration protein | - |
| AOY65_RS11775 (2413034) | 2413034..2414059 | + | 1026 | WP_000063238.1 | major capsid protein | - |
| AOY65_RS11780 (2414101) | 2414101..2414496 | + | 396 | WP_000158868.1 | DNA-packaging protein FI | - |
| AOY65_RS11785 (2414508) | 2414508..2414861 | + | 354 | WP_000752986.1 | head-tail joining protein | - |
| AOY65_RS11790 (2414873) | 2414873..2415451 | + | 579 | WP_073547367.1 | phage tail protein | - |
| AOY65_RS11795 (2415448) | 2415448..2415843 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| AOY65_RS11800 (2415851) | 2415851..2416591 | + | 741 | WP_001564531.1 | phage tail protein | - |
| AOY65_RS11805 (2416607) | 2416607..2417029 | + | 423 | WP_001564532.1 | phage minor tail protein G | - |
| AOY65_RS11810 (2417011) | 2417011..2417445 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| AOY65_RS11815 (2417438) | 2417438..2420017 | + | 2580 | WP_000840345.1 | phage tail tape measure protein | - |
| AOY65_RS11820 (2420014) | 2420014..2420343 | + | 330 | WP_000847345.1 | phage tail protein | - |
| AOY65_RS11825 (2420343) | 2420343..2421041 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| AOY65_RS11830 (2421047) | 2421047..2421790 | + | 744 | WP_000140764.1 | C40 family peptidase | - |
| AOY65_RS11835 (2421727) | 2421727..2422329 | + | 603 | WP_000090905.1 | tail assembly protein | - |
| AOY65_RS11840 (2422390) | 2422390..2425869 | + | 3480 | WP_000515751.1 | host specificity protein J | - |
| AOY65_RS11845 (2425937) | 2425937..2426536 | + | 600 | WP_032292241.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| AOY65_RS11850 (2426601) | 2426601..2429999 | + | 3399 | WP_073547402.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AOY65_RS11855 (2429999) | 2429999..2430574 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| AOY65_RS11860 (2430672) | 2430672..2431262 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| AOY65_RS11865 (2431579) | 2431579..2431812 | - | 234 | WP_087906725.1 | cold shock protein YdfK | - |
| AOY65_RS11870 (2431881) | 2431881..2431994 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| AOY65_RS11875 (2432599) | 2432599..2433882 | + | 1284 | Protein_2328 | MHS family MFS transporter YdfJ | - |
| AOY65_RS11880 (2433971) | 2433971..2435431 | + | 1461 | WP_000527759.1 | mannitol dehydrogenase family protein | - |
| AOY65_RS11885 (2435467) | 2435467..2435670 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AOY65_RS11890 (2435848) | 2435848..2436534 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| AOY65_RS11895 (2436623) | 2436623..2437369 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|