Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2397584..2398110 | Replicon | chromosome |
| Accession | NZ_CP028762 | ||
| Organism | Escherichia coli strain A12 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | AOY65_RS11640 | Protein ID | WP_000323025.1 |
| Coordinates | 2397823..2398110 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | AOY65_RS11635 | Protein ID | WP_000534858.1 |
| Coordinates | 2397584..2397823 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY65_RS11605 (2392946) | 2392946..2393435 | + | 490 | Protein_2274 | class I SAM-dependent methyltransferase | - |
| AOY65_RS11610 (2393913) | 2393913..2394334 | + | 422 | Protein_2275 | hypothetical protein | - |
| AOY65_RS11615 (2394990) | 2394990..2396060 | + | 1071 | Protein_2276 | ISNCY family transposase | - |
| AOY65_RS11620 (2396133) | 2396133..2396282 | + | 150 | WP_011443592.1 | protein YdfW | - |
| AOY65_RS11625 (2396719) | 2396719..2397051 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| AOY65_RS11630 (2397254) | 2397254..2397559 | - | 306 | WP_001326990.1 | protein YdfV | - |
| AOY65_RS11635 (2397584) | 2397584..2397823 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| AOY65_RS11640 (2397823) | 2397823..2398110 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| AOY65_RS11645 (2398182) | 2398182..2398337 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY65_RS11650 (2398554) | 2398554..2398805 | + | 252 | WP_000980994.1 | protein Rem | - |
| AOY65_RS11655 (2398872) | 2398872..2399150 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY65_RS11660 (2399152) | 2399152..2400201 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY65_RS11665 (2400215) | 2400215..2400967 | + | 753 | WP_001047135.1 | antitermination protein | - |
| AOY65_RS11670 (2401245) | 2401245..2401334 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY65_RS11675 (2401389) | 2401389..2401601 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY65_RS11680 (2401902) | 2401902..2402117 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY65_RS11685 (2402481) | 2402481..2402651 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY65_RS11690 (2402871) | 2402871..2403086 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2372699..2433882 | 61183 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T103854 WP_000323025.1 NZ_CP028762:2397823-2398110 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T103854 NZ_CP028762:2397823-2398110 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT103854 WP_000534858.1 NZ_CP028762:2397584-2397823 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT103854 NZ_CP028762:2397584-2397823 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|