MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 71919 bp
Accession: NZ_CP028747 Location: 4418351..4490269 Organism: Escherichia coli strain A28 Replicon: chromosome
Accession: NZ_CP028747 Location: 4418351..4490269 Organism: Escherichia coli strain A28 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY81_RS21520 (4414144) | 4414144..4415445 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| AOY81_RS21525 (4415561) | 4415561..4415899 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| AOY81_RS21530 (4415875) | 4415875..4417572 | + | 1698 | WP_000068978.1 | protein-disulfide reductase DsbD | - |
| AOY81_RS21535 (4417609) | 4417609..4418184 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| AOY81_RS21545 (4418527) | 4418527..4419788 | + | 1262 | Protein_4228 | hypothetical protein ; Integrase | Integrase |
| AOY81_RS21550 (4420268) | 4420268..4421209 | + | 942 | WP_240760444.1 | hypothetical protein | - |
| AOY81_RS21555 (4421351) | 4421351..4421536 | + | 186 | WP_000200568.1 | AlpA family transcriptional regulator | - |
| AOY81_RS21560 (4421558) | 4421558..4421739 | + | 182 | Protein_4231 | hypothetical protein | - |
| AOY81_RS21565 (4421724) | 4421724..4422305 | + | 582 | WP_240760445.1 | DUF2857 domain-containing protein | - |
| AOY81_RS21570 (4422295) | 4422295..4422504 | + | 210 | WP_001112402.1 | TraR/DksA family transcriptional regulator | - |
| AOY81_RS21575 (4422646) | 4422646..4422861 | + | 216 | WP_001097632.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| AOY81_RS21580 (4423496) | 4423496..4423714 | + | 219 | WP_001231170.1 | hypothetical protein | - |
| AOY81_RS21585 (4423798) | 4423798..4424457 | + | 660 | WP_240760446.1 | hypothetical protein | VF |
| AOY81_RS21590 (4424498) | 4424498..4424803 | + | 306 | WP_240760447.1 | hypothetical protein | VF |
| AOY81_RS21595 (4424816) | 4424816..4427560 | + | 2745 | WP_240760448.1 | hypothetical protein | VF |
| AOY81_RS21600 (4427578) | 4427578..4428279 | + | 702 | WP_240760449.1 | type IV secretion system protein | - |
| AOY81_RS21605 (4428291) | 4428291..4428515 | + | 225 | WP_240760450.1 | EexN family lipoprotein | - |
| AOY81_RS21610 (4428527) | 4428527..4429597 | + | 1071 | Protein_4241 | type IV secretion system protein | - |
| AOY81_RS21615 (4429815) | 4429815..4430497 | + | 683 | Protein_4242 | hypothetical protein | VF |
| AOY81_RS21620 (4430494) | 4430494..4431399 | + | 906 | WP_240760451.1 | hypothetical protein | VF |
| AOY81_RS21625 (4431442) | 4431442..4432704 | + | 1263 | WP_240760452.1 | hypothetical protein | VF |
| AOY81_RS21630 (4432716) | 4432716..4433036 | + | 321 | WP_240760453.1 | hypothetical protein | - |
| AOY81_RS21635 (4433026) | 4433026..4434051 | + | 1026 | WP_240760454.1 | hypothetical protein | VF |
| AOY81_RS21640 (4434048) | 4434048..4434446 | + | 399 | WP_240760455.1 | cag pathogenicity island Cag12 family protein | - |
| AOY81_RS21645 (4434482) | 4434482..4434787 | + | 306 | WP_240760456.1 | conjugal transfer protein | - |
| AOY81_RS21650 (4435907) | 4435907..4437520 | + | 1614 | WP_240760457.1 | type IV secretion system DNA-binding domain-containing protein | - |
| AOY81_RS21655 (4437529) | 4437529..4438281 | + | 753 | WP_240760458.1 | MobC family replication-relaxation protein | - |
| AOY81_RS21660 (4438278) | 4438278..4438592 | - | 315 | WP_240760459.1 | CcdB family protein | Toxin Detail |
| AOY81_RS21665 (4438595) | 4438595..4438831 | - | 237 | WP_240760460.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| AOY81_RS21670 (4439036) | 4439036..4439236 | + | 201 | Protein_4253 | IS21 family transposase | - |
| AOY81_RS21675 (4439251) | 4439251..4439379 | + | 129 | Protein_4254 | ATP-binding protein | - |
| AOY81_RS21680 (4439451) | 4439451..4439555 | - | 105 | Protein_4255 | transposase | - |
| AOY81_RS21685 (4439737) | 4439737..4439877 | - | 141 | Protein_4256 | IS3 family transposase | - |
| AOY81_RS21690 (4440576) | 4440576..4441040 | - | 465 | WP_240760461.1 | transcriptional regulator | - |
| AOY81_RS21695 (4441048) | 4441048..4442232 | - | 1185 | WP_240760462.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| AOY81_RS21700 (4442201) | 4442201..4443361 | - | 1161 | WP_240760463.1 | ABC transporter substrate-binding protein | - |
| AOY81_RS21705 (4443358) | 4443358..4444584 | - | 1227 | WP_240760464.1 | MFS transporter | - |
| AOY81_RS21710 (4444584) | 4444584..4445741 | - | 1158 | WP_240760600.1 | NAD/NADP octopine/nopaline dehydrogenase family protein | - |
| AOY81_RS21715 (4445741) | 4445741..4446457 | - | 717 | WP_274613853.1 | pyridoxal-phosphate dependent enzyme | - |
| AOY81_RS24035 (4446484) | 4446484..4446753 | - | 270 | WP_274613843.1 | pyridoxal-phosphate dependent enzyme | - |
| AOY81_RS21720 (4446765) | 4446765..4448168 | - | 1404 | WP_240760465.1 | Y4yA family PLP-dependent enzyme | - |
| AOY81_RS21725 (4448178) | 4448178..4450307 | - | 2130 | WP_240760466.1 | Vitamin B12 transporter BtuB | VF |
| AOY81_RS21730 (4450332) | 4450332..4452191 | - | 1860 | WP_240760601.1 | IucA/IucC family protein | - |
| AOY81_RS21735 (4452410) | 4452410..4453270 | + | 861 | WP_240760467.1 | CoA ester lyase | - |
| AOY81_RS21740 (4453371) | 4453371..4454162 | - | 792 | WP_240760468.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| AOY81_RS21745 (4454162) | 4454162..4455244 | - | 1083 | WP_240760469.1 | Vitamin B12 import system permease protein BtuC | VF |
| AOY81_RS21750 (4455302) | 4455302..4456241 | - | 940 | Protein_4270 | IS3 family transposase | - |
| AOY81_RS21755 (4456443) | 4456443..4457393 | - | 951 | WP_240760470.1 | zincin-like metallopeptidase domain-containing protein | - |
| AOY81_RS21760 (4458336) | 4458336..4458611 | + | 276 | WP_240760471.1 | hypothetical protein | - |
| AOY81_RS21765 (4458735) | 4458735..4460267 | - | 1533 | WP_240760472.1 | IS3 family transposase ISKpn38 | Transposase |
| AOY81_RS21770 (4460508) | 4460508..4460711 | + | 204 | WP_240760473.1 | hypothetical protein | - |
| AOY81_RS21775 (4460857) | 4460857..4461600 | - | 744 | WP_240760474.1 | IS21 family transposase ISVch3 | Transposase |
| AOY81_RS21780 (4461611) | 4461611..4462378 | - | 768 | WP_240760475.1 | IS21 family transposase ISVch3 | Transposase |
| AOY81_RS21785 (4462377) | 4462377..4462781 | + | 405 | WP_240760476.1 | IS66 family transposase ISKpn24 | Transposase |
| AOY81_RS21790 (4462778) | 4462778..4463125 | + | 348 | WP_116835813.1 | IS66 family transposase ISKpn24 | Transposase |
| AOY81_RS21795 (4463174) | 4463174..4464616 | + | 1443 | Protein_4279 | IS66 family transposase ISKpn24 | Transposase |
| AOY81_RS21800 (4464703) | 4464703..4465728 | + | 1026 | WP_240760477.1 | IS110 family transposase ISYen1 | Transposase |
| AOY81_RS21805 (4466005) | 4466005..4466100 | + | 96 | Protein_4281 | IS66 family transposase ISEc22 | Transposase |
| AOY81_RS21810 (4466134) | 4466134..4466478 | - | 345 | WP_240760478.1 | NAD(P)-binding domain-containing protein | - |
| AOY81_RS21815 (4466719) | 4466719..4468243 | + | 1525 | Protein_4283 | IS21 family transposase ISVch3 | Transposase |
| AOY81_RS21820 (4468254) | 4468254..4468997 | + | 744 | WP_240760474.1 | IS21 family transposase ISVch3 | Transposase |
| AOY81_RS21825 (4469086) | 4469086..4469433 | + | 348 | Protein_4285 | IS66 family transposase ISCro1 | Transposase |
| AOY81_RS21830 (4469477) | 4469477..4469670 | + | 194 | Protein_4286 | integrase core domain-containing protein | - |
| AOY81_RS21835 (4470038) | 4470038..4470703 | - | 666 | WP_240760479.1 | hypothetical protein | - |
| AOY81_RS21840 (4471032) | 4471032..4471379 | - | 348 | WP_240760602.1 | hypothetical protein | VF |
| AOY81_RS21845 (4471486) | 4471486..4474068 | - | 2583 | WP_274613854.1 | hypothetical protein | VF |
| AOY81_RS21850 (4474080) | 4474080..4474889 | - | 810 | WP_274613844.1 | hypothetical protein | VF |
| AOY81_RS21855 (4474941) | 4474941..4475255 | - | 315 | WP_240760480.1 | hypothetical protein | VF |
| AOY81_RS21860 (4475917) | 4475917..4476105 | + | 189 | Protein_4292 | IS3 family transposase IS1230B | Transposase |
| AOY81_RS21865 (4476139) | 4476139..4477730 | - | 1592 | Protein_4293 | IS66 family transposase ISEc23 | Transposase |
| AOY81_RS21870 (4477761) | 4477761..4478111 | - | 351 | WP_240760481.1 | IS66 family transposase IS682 | Transposase |
| AOY81_RS21875 (4478108) | 4478108..4478542 | - | 435 | WP_240760482.1 | IS66 family transposase ISEc43 | Transposase |
| AOY81_RS21880 (4478627) | 4478627..4479140 | + | 514 | Protein_4296 | IS3 family transposase ISEal1 | Transposase |
| AOY81_RS21885 (4479809) | 4479809..4480267 | + | 459 | Protein_4297 | reverse transcriptase domain-containing protein | - |
| AOY81_RS21890 (4480320) | 4480320..4480802 | + | 483 | WP_240760483.1 | IS66 family transposase ISCro1 | Transposase |
| AOY81_RS21895 (4480806) | 4480806..4482362 | - | 1557 | WP_240760484.1 | IS66 family transposase ISSfl3 | Transposase |
| AOY81_RS21900 (4482382) | 4482382..4482729 | - | 348 | WP_240760485.1 | IS66 family transposase ISSfl3 | Transposase |
| AOY81_RS21905 (4482726) | 4482726..4483370 | - | 645 | WP_240760486.1 | IS66-like element accessory protein TnpA | - |
| AOY81_RS21910 (4483963) | 4483963..4484928 | + | 966 | WP_240760487.1 | urea transporter | - |
| AOY81_RS21915 (4485169) | 4485169..4486200 | + | 1032 | WP_096216271.1 | IS110 family transposase ISSpe2 | Transposase |
| AOY81_RS21920 (4486236) | 4486236..4486663 | - | 428 | Protein_4304 | fructuronate reductase | - |
| AOY81_RS21925 (4486743) | 4486743..4487681 | - | 939 | Protein_4305 | mannonate dehydratase | - |
| AOY81_RS21930 (4487755) | 4487755..4488963 | + | 1209 | WP_240760426.1 | IS256 family transposase ISEic2 | Transposase |
| AOY81_RS21935 (4489207) | 4489207..4489788 | - | 582 | WP_240760488.1 | DNA primase | - |
| AOY81_RS21940 (4490886) | 4490886..4492424 | + | 1539 | WP_001187177.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| AOY81_RS21945 (4492789) | 4492789..4494123 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|