MGE detailed information
MGE type: Prophage MGE length: 51417 bp
Accession: NZ_CP028740 Location: 2428483..2479899 Organism: Escherichia coli strain A35 Replicon: chromosome
Accession: NZ_CP028740 Location: 2428483..2479899 Organism: Escherichia coli strain A35 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY88_RS11835 (2424996) | 2424996..2425742 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| AOY88_RS11840 (2425831) | 2425831..2426517 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| AOY88_RS11845 (2426695) | 2426695..2426898 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AOY88_RS11850 (2426934) | 2426934..2428394 | - | 1461 | WP_001542905.1 | mannitol dehydrogenase family protein | - |
| AOY88_RS11855 (2428483) | 2428483..2429766 | - | 1284 | Protein_2308 | MHS family MFS transporter YdfJ | - |
| AOY88_RS11860 (2430370) | 2430370..2430483 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| AOY88_RS11865 (2430552) | 2430552..2430785 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AOY88_RS11870 (2431102) | 2431102..2431692 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AOY88_RS11875 (2431790) | 2431790..2431912 | - | 123 | Protein_2312 | tail fiber assembly protein | - |
| AOY88_RS11880 (2431964) | 2431964..2432767 | - | 804 | WP_032193469.1 | tail fiber domain-containing protein | - |
| AOY88_RS11885 (2434529) | 2434529..2435566 | - | 1038 | Protein_2314 | prophage tail fiber N-terminal domain-containing protein | - |
| AOY88_RS11890 (2435631) | 2435631..2436230 | - | 600 | WP_001230412.1 | hypothetical protein | VF |
| AOY88_RS11895 (2436297) | 2436297..2439695 | - | 3399 | WP_124055714.1 | host specificity protein J | - |
| AOY88_RS11900 (2439756) | 2439756..2440403 | - | 648 | WP_032198003.1 | tail assembly protein | - |
| AOY88_RS11905 (2440301) | 2440301..2441044 | - | 744 | WP_032228194.1 | C40 family peptidase | - |
| AOY88_RS11910 (2441050) | 2441050..2441748 | - | 699 | WP_001152399.1 | phage minor tail protein L | - |
| AOY88_RS11915 (2441758) | 2441758..2442087 | - | 330 | WP_000447253.1 | phage tail protein | - |
| AOY88_RS23285 (2442087) | 2442087..2445145 | - | 3059 | Protein_2321 | phage tail tape measure protein | - |
| AOY88_RS11930 (2445117) | 2445117..2445446 | - | 330 | WP_032231171.1 | phage tail assembly protein T | - |
| AOY88_RS11935 (2445455) | 2445455..2445841 | - | 387 | WP_001298500.1 | phage minor tail protein G | - |
| AOY88_RS11940 (2445902) | 2445902..2446645 | - | 744 | WP_032231172.1 | phage tail protein | - |
| AOY88_RS11945 (2446656) | 2446656..2447057 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| AOY88_RS11950 (2447054) | 2447054..2447632 | - | 579 | WP_000677102.1 | phage tail protein | - |
| AOY88_RS11955 (2447644) | 2447644..2447919 | - | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| AOY88_RS11960 (2447912) | 2447912..2448235 | - | 324 | WP_001097039.1 | DUF2190 family protein | - |
| AOY88_RS11965 (2448322) | 2448322..2450349 | - | 2028 | WP_240766878.1 | Phosphoenolpyruvate-protein phosphotransferase | VF |
| AOY88_RS11970 (2450294) | 2450294..2451802 | - | 1509 | WP_000985957.1 | phage portal protein | - |
| AOY88_RS11975 (2451802) | 2451802..2452014 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| AOY88_RS11980 (2452011) | 2452011..2454110 | - | 2100 | WP_001774468.1 | phage terminase large subunit family protein | - |
| AOY88_RS11985 (2454119) | 2454119..2454646 | - | 528 | WP_001389340.1 | DUF1441 family protein | - |
| AOY88_RS11990 (2455219) | 2455219..2455425 | - | 207 | WP_001031433.1 | hypothetical protein | - |
| AOY88_RS11995 (2455726) | 2455726..2456157 | + | 432 | WP_000035576.1 | DUF1398 domain-containing protein | - |
| AOY88_RS12000 (2456309) | 2456309..2456482 | - | 174 | WP_001019139.1 | addiction module toxin, GnsA/GnsB family | - |
| AOY88_RS12005 (2456654) | 2456654..2456884 | - | 231 | WP_000720962.1 | protein YnfN | - |
| AOY88_RS12010 (2456889) | 2456889..2456954 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| AOY88_RS12015 (2456957) | 2456957..2457145 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| AOY88_RS12020 (2457156) | 2457156..2457368 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AOY88_RS12025 (2457730) | 2457730..2458227 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AOY88_RS12030 (2458224) | 2458224..2458757 | - | 534 | WP_001092971.1 | lysozyme | - |
| AOY88_RS12035 (2458754) | 2458754..2459065 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| AOY88_RS12040 (2459070) | 2459070..2459285 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AOY88_RS12045 (2459505) | 2459505..2459675 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY88_RS12050 (2460039) | 2460039..2460254 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY88_RS12055 (2460555) | 2460555..2460767 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY88_RS12060 (2460822) | 2460822..2460911 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY88_RS12065 (2461189) | 2461189..2461941 | - | 753 | WP_001047135.1 | antitermination protein | - |
| AOY88_RS12070 (2461955) | 2461955..2463004 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY88_RS12075 (2463006) | 2463006..2463284 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY88_RS12080 (2463351) | 2463351..2463602 | - | 252 | WP_000980994.1 | protein Rem | - |
| AOY88_RS12085 (2463819) | 2463819..2463974 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY88_RS12090 (2464046) | 2464046..2464333 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AOY88_RS12095 (2464333) | 2464333..2464572 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AOY88_RS12100 (2464597) | 2464597..2464902 | + | 306 | WP_071527819.1 | protein YdfV | - |
| AOY88_RS12105 (2465105) | 2465105..2465437 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| AOY88_RS12110 (2465874) | 2465874..2466023 | - | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| AOY88_RS12115 (2466096) | 2466096..2467193 | - | 1098 | Protein_2359 | ISNCY family transposase ISCARN112 | Transposase |
| AOY88_RS12120 (2467248) | 2467248..2467667 | - | 420 | WP_001151196.1 | DUF977 family protein | - |
| AOY88_RS12125 (2467708) | 2467708..2468673 | - | 966 | WP_240766879.1 | hypothetical protein | - |
| AOY88_RS12130 (2468654) | 2468654..2469175 | - | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| AOY88_RS12135 (2469159) | 2469159..2469386 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| AOY88_RS12140 (2469464) | 2469464..2469871 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| AOY88_RS12145 (2470064) | 2470064..2470219 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| AOY88_RS23290 (2470221) | 2470221..2470322 | + | 102 | Protein_2366 | protein YdfB | - |
| AOY88_RS12155 (2471283) | 2471283..2471471 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AOY88_RS12160 (2471468) | 2471468..2471659 | + | 192 | WP_001083281.1 | lysis protein YdfD | - |
| AOY88_RS12165 (2471753) | 2471753..2474224 | + | 2472 | WP_072652568.1 | exonuclease | - |
| AOY88_RS12170 (2474297) | 2474297..2474548 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| AOY88_RS12175 (2474583) | 2474583..2475863 | + | 1281 | WP_001459782.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AOY88_RS12180 (2476051) | 2476051..2477070 | - | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| AOY88_RS12185 (2477082) | 2477082..2478296 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| AOY88_RS12190 (2478502) | 2478502..2478828 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| AOY88_RS12195 (2478963) | 2478963..2479304 | + | 342 | WP_000705214.1 | DUF1283 family protein | - |
| AOY88_RS12200 (2479339) | 2479339..2479899 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| AOY88_RS12205 (2479902) | 2479902..2480612 | - | 711 | WP_072127283.1 | YnfC family lipoprotein | - |
| AOY88_RS12210 (2480720) | 2480720..2481025 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| AOY88_RS12215 (2481224) | 2481224..2483650 | + | 2427 | WP_000041556.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|