MGE detailed information
MGE type: Prophage MGE length: 52880 bp
Accession: NZ_CP028738 Location: 2360937..2413816 Organism: Escherichia coli strain A38 Replicon: chromosome
Accession: NZ_CP028738 Location: 2360937..2413816 Organism: Escherichia coli strain A38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY91_RS11425 (2357186) | 2357186..2359612 | - | 2427 | WP_240727323.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| AOY91_RS11430 (2359811) | 2359811..2360116 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| AOY91_RS11435 (2360224) | 2360224..2360934 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| AOY91_RS11440 (2360937) | 2360937..2361497 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| AOY91_RS11445 (2361532) | 2361532..2361873 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| AOY91_RS11450 (2362008) | 2362008..2362334 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| AOY91_RS11455 (2362540) | 2362540..2363754 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| AOY91_RS11460 (2363766) | 2363766..2364785 | + | 1020 | WP_000836064.1 | Zn-dependent oxidoreductase | - |
| AOY91_RS11465 (2364973) | 2364973..2366253 | - | 1281 | WP_000876986.1 | Putative defective protein IntQ ; Integrase | Integrase |
| AOY91_RS11470 (2366288) | 2366288..2366539 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| AOY91_RS11475 (2366612) | 2366612..2369083 | - | 2472 | WP_016242145.1 | exonuclease | - |
| AOY91_RS11480 (2369176) | 2369176..2369367 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| AOY91_RS11485 (2369364) | 2369364..2369552 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AOY91_RS11490 (2370120) | 2370120..2370338 | - | 219 | WP_001171942.1 | protein YdfC | - |
| AOY91_RS23590 (2370368) | 2370368..2370496 | - | 129 | WP_000344930.1 | protein YdfB | - |
| AOY91_RS11495 (2370498) | 2370498..2370653 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| AOY91_RS11500 (2370820) | 2370820..2371227 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| AOY91_RS11505 (2371311) | 2371311..2371541 | + | 231 | WP_000920569.1 | dicB transcriptional regulator DicC | - |
| AOY91_RS11510 (2371525) | 2371525..2372046 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| AOY91_RS11515 (2372027) | 2372027..2372992 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| AOY91_RS11520 (2373033) | 2373033..2373455 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| AOY91_RS11525 (2373452) | 2373452..2373941 | + | 490 | Protein_2259 | class I SAM-dependent methyltransferase | - |
| AOY91_RS11530 (2374419) | 2374419..2374840 | + | 422 | Protein_2260 | hypothetical protein | - |
| AOY91_RS11535 (2375475) | 2375475..2375846 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| AOY91_RS11540 (2375884) | 2375884..2376546 | + | 663 | Protein_2262 | ISNCY family transposase ISCARN112 | Transposase |
| AOY91_RS11545 (2376667) | 2376667..2376816 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| AOY91_RS11550 (2377253) | 2377253..2377585 | - | 333 | WP_001406658.1 | Protein FlxA ; Integrase | Integrase |
| AOY91_RS11555 (2377788) | 2377788..2378093 | - | 306 | WP_001326990.1 | protein YdfV | - |
| AOY91_RS11560 (2378118) | 2378118..2378357 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AOY91_RS11565 (2378357) | 2378357..2378644 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AOY91_RS11570 (2378716) | 2378716..2378871 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY91_RS11575 (2379088) | 2379088..2379339 | + | 252 | WP_000980994.1 | protein Rem | - |
| AOY91_RS11580 (2379406) | 2379406..2379684 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY91_RS11585 (2379686) | 2379686..2380735 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY91_RS11590 (2380749) | 2380749..2381501 | + | 753 | WP_001047135.1 | antitermination protein | - |
| AOY91_RS11595 (2381779) | 2381779..2381868 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY91_RS11600 (2381923) | 2381923..2382135 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY91_RS11605 (2382436) | 2382436..2382651 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY91_RS11610 (2383015) | 2383015..2383185 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY91_RS11615 (2383405) | 2383405..2383620 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AOY91_RS11620 (2383625) | 2383625..2383936 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| AOY91_RS11625 (2383933) | 2383933..2384466 | + | 534 | WP_001092971.1 | lysozyme | - |
| AOY91_RS11630 (2384463) | 2384463..2384960 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AOY91_RS11635 (2385324) | 2385324..2385536 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AOY91_RS11640 (2385547) | 2385547..2385735 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| AOY91_RS11645 (2385738) | 2385738..2385803 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| AOY91_RS11650 (2385808) | 2385808..2386038 | + | 231 | WP_000720962.1 | protein YnfN | - |
| AOY91_RS11655 (2386210) | 2386210..2386383 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| AOY91_RS11660 (2386535) | 2386535..2386945 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| AOY91_RS11665 (2387003) | 2387003..2387236 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| AOY91_RS11670 (2387625) | 2387625..2388170 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| AOY91_RS11675 (2388145) | 2388145..2390070 | + | 1926 | WP_001027297.1 | phage terminase large subunit family protein | - |
| AOY91_RS11680 (2390067) | 2390067..2390273 | + | 207 | WP_000198149.1 | gpW family protein | - |
| AOY91_RS11685 (2390270) | 2390270..2391871 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| AOY91_RS11690 (2391852) | 2391852..2393171 | + | 1320 | WP_052972054.1 | S49 family peptidase | - |
| AOY91_RS11695 (2393181) | 2393181..2393513 | + | 333 | WP_001299443.1 | head decoration protein | - |
| AOY91_RS11700 (2393569) | 2393569..2394594 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| AOY91_RS11705 (2394636) | 2394636..2395034 | + | 399 | WP_000158905.1 | DNA-packaging protein FI | - |
| AOY91_RS11710 (2395046) | 2395046..2395399 | + | 354 | WP_000753006.1 | head-tail joining protein | - |
| AOY91_RS11715 (2395411) | 2395411..2395989 | + | 579 | WP_000975081.1 | phage tail protein | - |
| AOY91_RS11720 (2395986) | 2395986..2396381 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| AOY91_RS11725 (2396389) | 2396389..2397129 | + | 741 | WP_052999425.1 | phage tail protein | - |
| AOY91_RS11730 (2397145) | 2397145..2397567 | + | 423 | WP_000479150.1 | phage minor tail protein G | - |
| AOY91_RS11735 (2397549) | 2397549..2397983 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| AOY91_RS11740 (2397976) | 2397976..2400555 | + | 2580 | WP_076033901.1 | phage tail tape measure protein | - |
| AOY91_RS11745 (2400552) | 2400552..2400881 | + | 330 | WP_000847379.1 | phage tail protein | - |
| AOY91_RS11750 (2400881) | 2400881..2401579 | + | 699 | WP_076033900.1 | phage minor tail protein L | - |
| AOY91_RS11755 (2401585) | 2401585..2402328 | + | 744 | WP_000194780.1 | C40 family peptidase | - |
| AOY91_RS11760 (2402325) | 2402325..2402897 | + | 573 | WP_000847666.1 | tail assembly protein | - |
| AOY91_RS11765 (2402958) | 2402958..2406371 | + | 3414 | WP_240727324.1 | host specificity protein J | - |
| AOY91_RS11770 (2406442) | 2406442..2407041 | + | 600 | WP_001233071.1 | Outer membrane protein X | VF |
| AOY91_RS11775 (2407106) | 2407106..2409934 | + | 2829 | WP_016238946.1 | phage tail protein | - |
| AOY91_RS11780 (2409934) | 2409934..2410509 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| AOY91_RS11785 (2410607) | 2410607..2411197 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AOY91_RS11790 (2411514) | 2411514..2411747 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AOY91_RS11795 (2411816) | 2411816..2411929 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| AOY91_RS11800 (2412533) | 2412533..2413816 | + | 1284 | Protein_2314 | MHS family MFS transporter YdfJ | - |
| AOY91_RS11805 (2413905) | 2413905..2415365 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| AOY91_RS11810 (2415401) | 2415401..2415604 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AOY91_RS11815 (2415782) | 2415782..2416468 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| AOY91_RS11820 (2416557) | 2416557..2417303 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|