Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2378118..2378644 | Replicon | chromosome |
| Accession | NZ_CP028738 | ||
| Organism | Escherichia coli strain A38 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | AOY91_RS11565 | Protein ID | WP_000323025.1 |
| Coordinates | 2378357..2378644 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | AOY91_RS11560 | Protein ID | WP_000534858.1 |
| Coordinates | 2378118..2378357 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY91_RS11525 (2373452) | 2373452..2373941 | + | 490 | Protein_2259 | class I SAM-dependent methyltransferase | - |
| AOY91_RS11530 (2374419) | 2374419..2374840 | + | 422 | Protein_2260 | hypothetical protein | - |
| AOY91_RS11535 (2375475) | 2375475..2375846 | + | 372 | WP_001406656.1 | helix-turn-helix domain-containing protein | - |
| AOY91_RS11540 (2375884) | 2375884..2376546 | + | 663 | Protein_2262 | ISNCY family transposase | - |
| AOY91_RS11545 (2376667) | 2376667..2376816 | + | 150 | WP_011443592.1 | protein YdfW | - |
| AOY91_RS11550 (2377253) | 2377253..2377585 | - | 333 | WP_001406658.1 | FlxA-like family protein | - |
| AOY91_RS11555 (2377788) | 2377788..2378093 | - | 306 | WP_001326990.1 | protein YdfV | - |
| AOY91_RS11560 (2378118) | 2378118..2378357 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| AOY91_RS11565 (2378357) | 2378357..2378644 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| AOY91_RS11570 (2378716) | 2378716..2378871 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AOY91_RS11575 (2379088) | 2379088..2379339 | + | 252 | WP_000980994.1 | protein Rem | - |
| AOY91_RS11580 (2379406) | 2379406..2379684 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AOY91_RS11585 (2379686) | 2379686..2380735 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AOY91_RS11590 (2380749) | 2380749..2381501 | + | 753 | WP_001047135.1 | antitermination protein | - |
| AOY91_RS11595 (2381779) | 2381779..2381868 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AOY91_RS11600 (2381923) | 2381923..2382135 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AOY91_RS11605 (2382436) | 2382436..2382651 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AOY91_RS11610 (2383015) | 2383015..2383185 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AOY91_RS11615 (2383405) | 2383405..2383620 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2360937..2413816 | 52879 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T103243 WP_000323025.1 NZ_CP028738:2378357-2378644 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T103243 NZ_CP028738:2378357-2378644 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT103243 WP_000534858.1 NZ_CP028738:2378118-2378357 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT103243 NZ_CP028738:2378118-2378357 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|