MGE detailed information
MGE type: Prophage MGE length: 44687 bp
Accession: NZ_CP028690 Location: 2459554..2504240 Organism: Escherichia coli strain 109 Replicon: chromosome
Accession: NZ_CP028690 Location: 2459554..2504240 Organism: Escherichia coli strain 109 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E38_RS12425 () | 2456552..2458978 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E38_RS12430 () | 2459177..2459482 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E38_RS12435 () | 2459590..2460300 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E38_RS12440 () | 2460303..2460863 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E38_RS12445 () | 2460898..2461239 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E38_RS12450 () | 2461374..2461700 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E38_RS12460 () | 2461972..2462654 | - | 683 | Protein_2391 | DUF3596 domain-containing protein | - |
| C9E38_RS12465 () | 2462689..2462940 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E38_RS12470 () | 2463013..2465484 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E38_RS12475 () | 2465577..2465768 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E38_RS12480 () | 2465765..2465953 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E38_RS12490 () | 2466522..2466740 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E38_RS12495 () | 2466812..2467111 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E38_RS12500 () | 2467464..2467742 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E38_RS12505 () | 2467744..2467935 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E38_RS12510 () | 2467956..2468327 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E38_RS12515 () | 2468425..2468727 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E38_RS12520 () | 2468724..2469149 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E38_RS12525 () | 2469172..2470134 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| C9E38_RS12530 () | 2470141..2470881 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| C9E38_RS12535 () | 2470907..2471676 | + | 770 | Protein_2405 | DUF1627 domain-containing protein | - |
| C9E38_RS12540 () | 2471692..2472087 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E38_RS12545 () | 2472144..2472728 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E38_RS12550 () | 2472844..2472948 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E38_RS12555 () | 2473194..2473349 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E38_RS12560 () | 2473517..2473795 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E38_RS12565 () | 2473797..2474846 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E38_RS12570 () | 2474859..2475218 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E38_RS12575 () | 2475215..2475904 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E38_RS12600 () | 2476543..2476971 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E38_RS12605 () | 2476968..2477223 | + | 256 | Protein_2415 | DUF3927 family protein | - |
| C9E38_RS12610 () | 2477450..2479300 | + | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| C9E38_RS12615 () | 2479740..2479955 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E38_RS12620 () | 2479960..2480304 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E38_RS12625 () | 2480355..2480888 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E38_RS12630 () | 2481159..2481728 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E38_RS12635 () | 2481728..2481874 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E38_RS12645 () | 2482102..2482287 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E38_RS12650 () | 2482712..2482939 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E38_RS12655 () | 2482981..2483346 | + | 366 | WP_000279786.1 | HNH endonuclease | - |
| C9E38_RS12665 () | 2483636..2484199 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| C9E38_RS12670 () | 2484196..2485857 | + | 1662 | WP_001301491.1 | terminase large subunit | - |
| C9E38_RS12675 () | 2485921..2487858 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| C9E38_RS12680 () | 2487903..2488124 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| C9E38_RS12685 () | 2488070..2490649 | + | 2580 | WP_098049823.1 | phage portal protein | - |
| C9E38_RS12690 () | 2490652..2490978 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| C9E38_RS12695 () | 2490988..2491338 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E38_RS12700 () | 2491335..2491781 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C9E38_RS12705 () | 2491778..2492122 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E38_RS12710 () | 2492181..2492897 | + | 717 | WP_001275500.1 | tail protein | - |
| C9E38_RS12715 () | 2492903..2493277 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E38_RS12720 () | 2493373..2493582 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E38_RS12725 () | 2493635..2496715 | + | 3081 | WP_000212897.1 | phage tail tape measure protein | - |
| C9E38_RS12730 () | 2496708..2497049 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E38_RS12735 () | 2497049..2497486 | + | 438 | WP_001152128.1 | phage minor tail protein L | - |
| C9E38_RS12740 () | 2497674..2501150 | + | 3477 | WP_000514792.1 | host specificity protein J | - |
| C9E38_RS12745 () | 2501218..2501817 | + | 600 | WP_001228304.1 | Alpha-xylosidase BoGH31A | VF |
| C9E38_RS12750 () | 2501969..2503282 | + | 1314 | WP_000216532.1 | ISNCY family transposase KIS | Transposase |
| C9E38_RS12755 () | 2503284..2503553 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E38_RS12760 () | 2503666..2504240 | + | 575 | Protein_2444 | putative protein YbiU | VF |
| C9E38_RS12765 () | 2504580..2505905 | - | 1326 | WP_001025672.1 | type III secretion system effector NleA | - |
| C9E38_RS12775 () | 2506566..2507480 | - | 915 | Protein_2446 | tyrosine-type recombinase/integrase | - |
| C9E38_RS12780 () | 2507503..2507625 | + | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E38_RS12785 () | 2507732..2508643 | + | 912 | WP_000950979.1 | type III secretion system effector kinase NleH1-2 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | Prophage | TA20321 | NC_002655 | 2282958..2329636 | 0.009 |