MGE detailed information
MGE type: Prophage MGE length: 108372 bp
Accession: NZ_CP028683 Location: 2451193..2559564 Organism: Escherichia coli strain 112 Replicon: chromosome
Accession: NZ_CP028683 Location: 2451193..2559564 Organism: Escherichia coli strain 112 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E41_RS12370 () | 2447093..2448313 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C9E41_RS12375 () | 2448438..2449133 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C9E41_RS12380 () | 2449086..2450378 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C9E41_RS12385 () | 2450536..2451150 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C9E41_RS12390 () | 2451193..2452047 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C9E41_RS12395 () | 2452049..2452666 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C9E41_RS12400 () | 2452677..2455100 | - | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E41_RS12405 () | 2455161..2457587 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E41_RS12410 () | 2457786..2458091 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E41_RS12415 () | 2458199..2458909 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E41_RS12420 () | 2458912..2459472 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E41_RS12425 () | 2459507..2459848 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E41_RS12430 () | 2459983..2460309 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E41_RS12440 () | 2460581..2461263 | - | 683 | Protein_2387 | DUF3596 domain-containing protein | - |
| C9E41_RS12445 () | 2461298..2461549 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E41_RS12450 () | 2461622..2464093 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E41_RS12455 () | 2464186..2464377 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E41_RS12460 () | 2464374..2464562 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E41_RS12470 () | 2465131..2465349 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E41_RS12475 () | 2465421..2465720 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E41_RS12480 () | 2466073..2466351 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E41_RS12485 () | 2466353..2466544 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E41_RS12490 () | 2466565..2466936 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E41_RS12495 () | 2467034..2467336 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E41_RS12500 () | 2467333..2467758 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E41_RS12505 () | 2467781..2468743 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| C9E41_RS12510 () | 2468750..2469490 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| C9E41_RS12515 () | 2469516..2470285 | + | 770 | Protein_2401 | DUF1627 domain-containing protein | - |
| C9E41_RS12520 () | 2470301..2470696 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E41_RS12525 () | 2470753..2471337 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E41_RS12530 () | 2471453..2471557 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E41_RS12535 () | 2471803..2471958 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E41_RS12540 () | 2472126..2472404 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E41_RS12545 () | 2472406..2473455 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E41_RS12550 () | 2473468..2473827 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E41_RS12555 () | 2473824..2474513 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E41_RS12580 () | 2475152..2475580 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E41_RS12585 () | 2475577..2475832 | + | 256 | Protein_2411 | DUF3927 family protein | - |
| C9E41_RS12590 () | 2476059..2477909 | + | 1851 | WP_064234946.1 | SASA family carbohydrate esterase | - |
| C9E41_RS12595 () | 2478348..2478563 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E41_RS12600 () | 2478568..2478912 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E41_RS12605 () | 2478963..2479496 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E41_RS12610 () | 2479767..2480336 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E41_RS12615 () | 2480336..2480482 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E41_RS12625 () | 2480710..2480895 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E41_RS12630 () | 2481320..2481547 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E41_RS12635 () | 2481589..2481954 | + | 366 | WP_000279786.1 | HNH endonuclease | - |
| C9E41_RS12645 () | 2482244..2482807 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| C9E41_RS12650 () | 2482804..2484465 | + | 1662 | WP_001301491.1 | terminase large subunit | - |
| C9E41_RS12655 () | 2484529..2486466 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| C9E41_RS12660 () | 2486511..2486732 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| C9E41_RS12665 () | 2486678..2489257 | + | 2580 | WP_001304108.1 | phage portal protein | - |
| C9E41_RS12670 () | 2489260..2489586 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| C9E41_RS12675 () | 2489596..2489946 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E41_RS12680 () | 2489943..2490389 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C9E41_RS12685 () | 2490386..2490730 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E41_RS12690 () | 2490789..2491505 | + | 717 | WP_001275500.1 | tail protein | - |
| C9E41_RS12695 () | 2491511..2491885 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E41_RS12700 () | 2491981..2492190 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E41_RS12705 () | 2492243..2495323 | + | 3081 | WP_000212897.1 | phage tail tape measure protein | - |
| C9E41_RS12710 () | 2495316..2495657 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E41_RS12715 () | 2495657..2496094 | + | 438 | WP_001152128.1 | phage minor tail protein L | - |
| C9E41_RS12720 () | 2496282..2499758 | + | 3477 | WP_000514792.1 | host specificity protein J | - |
| C9E41_RS12725 () | 2499826..2500425 | + | 600 | WP_001228304.1 | Outer membrane protein X | VF |
| C9E41_RS12730 () | 2500577..2501890 | + | 1314 | WP_000216532.1 | ISNCY family transposase KIS | Transposase |
| C9E41_RS12735 () | 2501892..2502161 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E41_RS12740 () | 2502274..2502848 | + | 575 | Protein_2440 | hypothetical protein | VF |
| C9E41_RS12745 () | 2503188..2504513 | - | 1326 | WP_001025672.1 | hypothetical protein | VF |
| C9E41_RS12755 () | 2505174..2506088 | - | 915 | Protein_2442 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E41_RS12760 () | 2506111..2506233 | + | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E41_RS12765 () | 2506340..2507251 | + | 912 | WP_000950979.1 | Protein kinase OspG | VF |
| C9E41_RS12770 () | 2507317..2507886 | + | 570 | WP_000938103.1 | Effector protein NleF | VF |
| C9E41_RS12775 () | 2507933..2508567 | - | 635 | Protein_2446 | IS256 family transposase ISEic2 | Transposase |
| C9E41_RS12780 () | 2508852..2510390 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E41_RS12785 () | 2510440..2510787 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E41_RS12790 () | 2510784..2511164 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E41_RS12795 () | 2511259..2512077 | + | 819 | Protein_2450 | IS256 family transposase IS1414 | Transposase |
| C9E41_RS12800 () | 2512127..2512369 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E41_RS12805 () | 2512547..2513098 | - | 552 | Protein_2452 | Putative defective protein IntQ ; Integrase | Integrase |
| C9E41_RS12810 () | 2513086..2514324 | - | 1239 | Protein_2453 | exonuclease | - |
| C9E41_RS12815 () | 2514417..2514605 | - | 189 | WP_000199475.1 | DUF1482 family protein | - |
| C9E41_RS12820 () | 2514602..2514790 | - | 189 | WP_000449175.1 | cell division inhibitor | - |
| C9E41_RS12830 () | 2515355..2515564 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| C9E41_RS12835 () | 2515565..2516203 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| C9E41_RS12840 () | 2516215..2516367 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| C9E41_RS12845 () | 2516660..2516998 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| C9E41_RS12850 () | 2517390..2517632 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| C9E41_RS12855 () | 2517616..2518041 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| C9E41_RS12860 () | 2518110..2519153 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| C9E41_RS12865 () | 2519146..2519607 | + | 462 | WP_000139447.1 | replication protein | - |
| C9E41_RS12870 () | 2519641..2520357 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| C9E41_RS12875 () | 2520390..2520671 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C9E41_RS12880 () | 2520668..2520895 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C9E41_RS12885 () | 2520888..2521199 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C9E41_RS12890 () | 2521327..2521545 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C9E41_RS12895 () | 2521547..2522104 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C9E41_RS12900 () | 2522395..2522550 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C9E41_RS12905 () | 2522670..2523014 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C9E41_RS12910 () | 2523136..2523408 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C9E41_RS12915 () | 2523410..2524459 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C9E41_RS12920 () | 2524472..2524777 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E41_RS12925 () | 2524840..2525394 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| C9E41_RS12930 () | 2525619..2525816 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| C9E41_RS12935 () | 2525952..2526665 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| C9E41_RS12950 () | 2527116..2527547 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E41_RS12955 () | 2527544..2527799 | + | 256 | Protein_2479 | DUF3927 family protein | - |
| C9E41_RS12960 () | 2528025..2529875 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E41_RS12965 () | 2530314..2530529 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E41_RS12970 () | 2530534..2530878 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E41_RS12975 () | 2530929..2531462 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E41_RS12980 () | 2531733..2532302 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E41_RS12985 () | 2532302..2532448 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E41_RS12990 () | 2532671..2532856 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E41_RS12995 () | 2533382..2533696 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E41_RS13000 () | 2533778..2534002 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E41_RS13010 () | 2534389..2534934 | + | 546 | WP_000867493.1 | terminase small subunit | - |
| C9E41_RS13015 () | 2534909..2536834 | + | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| C9E41_RS13020 () | 2536831..2537037 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E41_RS13025 () | 2537034..2538635 | + | 1602 | WP_001301524.1 | phage portal protein | - |
| C9E41_RS13030 () | 2538616..2539935 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E41_RS13035 () | 2539945..2540277 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E41_RS13040 () | 2540333..2541358 | + | 1026 | WP_000063265.1 | major capsid protein | - |
| C9E41_RS13045 () | 2541400..2541798 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E41_RS13050 () | 2541810..2542163 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E41_RS13055 () | 2542178..2542711 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E41_RS13060 () | 2542708..2543103 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E41_RS13065 () | 2543111..2543863 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E41_RS13070 () | 2543877..2544299 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E41_RS13075 () | 2544326..2544739 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E41_RS13080 () | 2544720..2547332 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E41_RS13085 () | 2547329..2547658 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E41_RS13090 () | 2547658..2548356 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E41_RS13095 () | 2548367..2549110 | + | 744 | WP_000194798.1 | C40 family peptidase | - |
| C9E41_RS13100 () | 2549056..2549685 | + | 630 | WP_072147834.1 | tail assembly protein | - |
| C9E41_RS13105 () | 2549926..2553405 | + | 3480 | WP_000514945.1 | host specificity protein J | - |
| C9E41_RS13110 () | 2553473..2554072 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E41_RS13115 () | 2554137..2555360 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C9E41_RS13120 () | 2555362..2555631 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E41_RS13125 () | 2555745..2556320 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E41_RS13130 () | 2556393..2557022 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E41_RS13135 () | 2557104..2557745 | + | 642 | WP_001143808.1 | hypothetical protein | VF |
| C9E41_RS13145 () | 2557907..2558149 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E41_RS13150 () | 2558281..2559564 | + | 1284 | Protein_2516 | MHS family MFS transporter YdfJ | - |
| C9E41_RS13155 () | 2559653..2561113 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E41_RS13160 () | 2561149..2561352 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E41_RS13165 () | 2561529..2562215 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E41_RS13170 () | 2562304..2563050 | - | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. Sakai | Prophage | TA1008 | NC_002695 | 2157035..2254487 | 0.009 |