MGE detailed information
MGE type: Prophage MGE length: 122513 bp
Accession: NZ_CP028680 Location: 2506935..2629447 Organism: Escherichia coli strain 113 Replicon: chromosome
Accession: NZ_CP028680 Location: 2506935..2629447 Organism: Escherichia coli strain 113 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E42_RS12795 () | 2502835..2504055 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C9E42_RS12800 () | 2504180..2504875 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C9E42_RS12805 () | 2504828..2506120 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C9E42_RS12810 () | 2506278..2506892 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C9E42_RS12815 () | 2506935..2507789 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C9E42_RS12820 () | 2507791..2508408 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C9E42_RS12825 () | 2508419..2510842 | - | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E42_RS12830 () | 2510903..2513329 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E42_RS12835 () | 2513528..2513833 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E42_RS12840 () | 2513941..2514651 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E42_RS12845 () | 2514654..2515214 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E42_RS12850 () | 2515249..2515590 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E42_RS12855 () | 2515725..2516051 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E42_RS12865 () | 2516821..2517005 | - | 185 | Protein_2460 | DUF3596 domain-containing protein | - |
| C9E42_RS12870 () | 2517040..2517291 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E42_RS12875 () | 2517364..2519835 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E42_RS12880 () | 2519928..2520119 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E42_RS12885 () | 2520116..2520304 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E42_RS12895 () | 2520873..2521091 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E42_RS12900 () | 2521163..2521462 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E42_RS12905 () | 2521815..2522093 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E42_RS12910 () | 2522095..2522286 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E42_RS12915 () | 2522307..2522678 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E42_RS12920 () | 2522776..2523078 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E42_RS12925 () | 2523075..2523500 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E42_RS12930 () | 2523523..2524485 | + | 963 | WP_000095670.1 | helix-turn-helix domain-containing protein | - |
| C9E42_RS12935 () | 2524492..2525232 | + | 741 | WP_000788936.1 | ATP-binding protein | - |
| C9E42_RS12940 () | 2525258..2526027 | + | 770 | Protein_2474 | DUF1627 domain-containing protein | - |
| C9E42_RS12945 () | 2526043..2526438 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E42_RS12950 () | 2526495..2527079 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E42_RS12955 () | 2527195..2527299 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E42_RS12960 () | 2527545..2527700 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E42_RS12965 () | 2527868..2528146 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E42_RS12970 () | 2528148..2529197 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E42_RS12975 () | 2529210..2529569 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E42_RS12980 () | 2529566..2530255 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E42_RS13005 () | 2530892..2531320 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E42_RS13010 () | 2531317..2531572 | + | 256 | Protein_2484 | DUF3927 family protein | - |
| C9E42_RS13015 () | 2531799..2533649 | + | 1851 | WP_024748470.1 | SASA family carbohydrate esterase | - |
| C9E42_RS13020 () | 2534089..2534304 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E42_RS13025 () | 2534309..2534653 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E42_RS13030 () | 2534704..2535237 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E42_RS13035 () | 2535507..2536076 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E42_RS13040 () | 2536076..2536222 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E42_RS13050 () | 2536450..2536635 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E42_RS13055 () | 2537060..2537287 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E42_RS13060 () | 2537329..2537694 | + | 366 | WP_015994246.1 | HNH endonuclease | - |
| C9E42_RS13070 () | 2537984..2538547 | + | 564 | WP_001303051.1 | terminase small subunit | - |
| C9E42_RS13075 () | 2538544..2540205 | + | 1662 | WP_024748457.1 | terminase large subunit | - |
| C9E42_RS13080 () | 2540269..2542206 | + | 1938 | WP_000172999.1 | phage major capsid protein | - |
| C9E42_RS13085 () | 2542251..2542472 | + | 222 | WP_001063099.1 | hypothetical protein | - |
| C9E42_RS13090 () | 2542418..2545003 | + | 2586 | WP_137049511.1 | phage portal protein | - |
| C9E42_RS13095 () | 2545000..2545326 | + | 327 | WP_000125984.1 | head-tail connector protein | - |
| C9E42_RS13100 () | 2545336..2545686 | + | 351 | WP_001007901.1 | phage head closure protein | - |
| C9E42_RS13105 () | 2545683..2546129 | + | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| C9E42_RS13110 () | 2546126..2546470 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E42_RS13115 () | 2546529..2547245 | + | 717 | WP_001275508.1 | tail protein | - |
| C9E42_RS13120 () | 2547251..2547625 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E42_RS13125 () | 2547721..2547930 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E42_RS13130 () | 2547983..2551225 | + | 3243 | WP_064261924.1 | phage tail tape measure protein | - |
| C9E42_RS13135 () | 2551218..2551559 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E42_RS13140 () | 2551559..2552257 | + | 699 | WP_001303038.1 | phage minor tail protein L | - |
| C9E42_RS13145 () | 2552268..2553011 | + | 744 | WP_046671488.1 | C40 family peptidase | - |
| C9E42_RS13150 () | 2552957..2553589 | + | 633 | WP_050439450.1 | tail assembly protein | - |
| C9E42_RS13155 () | 2553932..2555107 | + | 1176 | WP_001304109.1 | host specificity protein J | - |
| C9E42_RS13160 () | 2555059..2557404 | + | 2346 | WP_129137390.1 | host specificity protein J | - |
| C9E42_RS13165 () | 2557472..2558071 | + | 600 | WP_001228304.1 | Outer membrane protein X | VF |
| C9E42_RS13170 () | 2558223..2559536 | + | 1314 | WP_024748516.1 | ISNCY family transposase KIS | Transposase |
| C9E42_RS13175 () | 2559538..2559807 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E42_RS13180 () | 2559920..2560494 | + | 575 | Protein_2516 | hypothetical protein | VF |
| C9E42_RS13185 () | 2560834..2562159 | - | 1326 | WP_001025672.1 | hypothetical protein | VF |
| C9E42_RS13195 () | 2562820..2563734 | - | 915 | Protein_2518 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E42_RS13200 () | 2563748..2563858 | + | 111 | Protein_2519 | type III effector | - |
| C9E42_RS13205 () | 2563905..2564539 | - | 635 | Protein_2520 | IS256 family transposase ISEic2 | Transposase |
| C9E42_RS13210 () | 2564824..2566362 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS13215 () | 2566412..2566759 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS13220 () | 2566756..2567136 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS13225 () | 2567476..2567754 | - | 279 | WP_001303943.1 | hypothetical protein | - |
| C9E42_RS13230 () | 2568182..2568328 | + | 147 | WP_001414184.1 | hypothetical protein | - |
| C9E42_RS13235 () | 2568465..2569112 | - | 648 | WP_001303944.1 | hypothetical protein | VF |
| C9E42_RS13240 () | 2569296..2569886 | + | 591 | WP_001144877.1 | hypothetical protein | VF |
| C9E42_RS13245 () | 2570105..2571161 | - | 1057 | Protein_2528 | IS630 family transposase | - |
| C9E42_RS13250 () | 2571393..2572043 | + | 651 | WP_001345079.1 | hypothetical protein | VF |
| C9E42_RS13255 () | 2572202..2572437 | + | 236 | Protein_2530 | IS3 family transposase | - |
| C9E42_RS13265 () | 2573172..2573297 | + | 126 | Protein_2531 | outer membrane protein OmpW | - |
| C9E42_RS13270 () | 2573343..2574473 | - | 1131 | WP_001500821.1 | hypothetical protein ; Integrase | Integrase |
| C9E42_RS13275 () | 2574451..2574699 | - | 249 | WP_000113189.1 | excisionase | - |
| C9E42_RS13280 () | 2574764..2577208 | - | 2445 | WP_000102181.1 | exonuclease | - |
| C9E42_RS13285 () | 2577301..2577489 | - | 189 | WP_000092782.1 | DUF1482 family protein | - |
| C9E42_RS13290 () | 2577486..2577674 | - | 189 | WP_000450222.1 | cell division inhibitor | - |
| C9E42_RS13300 () | 2578239..2578448 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| C9E42_RS13305 () | 2578449..2579087 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| C9E42_RS13310 () | 2579099..2579251 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| C9E42_RS13315 () | 2579544..2579882 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| C9E42_RS13320 () | 2580274..2580516 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| C9E42_RS13325 () | 2580500..2580925 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| C9E42_RS13330 () | 2580994..2582037 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| C9E42_RS13335 () | 2582030..2582491 | + | 462 | WP_000139447.1 | replication protein | - |
| C9E42_RS13340 () | 2582525..2583241 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| C9E42_RS13345 () | 2583274..2583555 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C9E42_RS13350 () | 2583552..2583779 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C9E42_RS13355 () | 2583772..2584083 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C9E42_RS13360 () | 2584211..2584429 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C9E42_RS13365 () | 2584431..2584988 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| - () | 2585209..2585267 | - | 59 | - | - | Antitoxin Detail |
| C9E42_RS13370 () | 2585279..2585434 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C9E42_RS13375 () | 2585554..2585898 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C9E42_RS13380 () | 2586020..2586292 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C9E42_RS13385 () | 2586294..2587343 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C9E42_RS13390 () | 2587356..2587661 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E42_RS13395 () | 2587724..2588278 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| C9E42_RS13400 () | 2588503..2588700 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| C9E42_RS13405 () | 2588836..2589549 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| C9E42_RS13420 () | 2590000..2590431 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E42_RS13425 () | 2590428..2590683 | + | 256 | Protein_2560 | DUF3927 family protein | - |
| C9E42_RS13430 () | 2590909..2592759 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E42_RS13435 () | 2593199..2593414 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E42_RS13440 () | 2593419..2593763 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E42_RS13445 () | 2593814..2594347 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E42_RS13450 () | 2594618..2595187 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E42_RS13455 () | 2595187..2595333 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E42_RS13460 () | 2595556..2595741 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E42_RS13465 () | 2596267..2596581 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E42_RS13470 () | 2596663..2596887 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E42_RS13480 () | 2597274..2597819 | + | 546 | WP_000867498.1 | terminase small subunit | - |
| C9E42_RS13485 () | 2597794..2599719 | + | 1926 | WP_024748469.1 | phage terminase large subunit family protein | - |
| C9E42_RS13490 () | 2599716..2599922 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E42_RS13495 () | 2599919..2601520 | + | 1602 | WP_001301524.1 | phage portal protein | - |
| C9E42_RS13500 () | 2601501..2602820 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E42_RS13505 () | 2602830..2603162 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E42_RS13510 () | 2603218..2604243 | + | 1026 | WP_024748468.1 | major capsid protein | - |
| C9E42_RS13515 () | 2604285..2604683 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E42_RS13520 () | 2604695..2605048 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E42_RS13525 () | 2605063..2605596 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E42_RS13530 () | 2605593..2605988 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E42_RS13535 () | 2605996..2606748 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E42_RS13540 () | 2606762..2607184 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E42_RS13545 () | 2607211..2607624 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E42_RS13550 () | 2607605..2610217 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E42_RS13555 () | 2610214..2610543 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E42_RS13560 () | 2610543..2611241 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E42_RS13565 () | 2611252..2611995 | + | 744 | WP_000194801.1 | C40 family peptidase | - |
| C9E42_RS13570 () | 2611941..2612573 | + | 633 | WP_129137391.1 | tail assembly protein | - |
| C9E42_RS13575 () | 2612820..2616299 | + | 3480 | WP_000514788.1 | host specificity protein J | - |
| C9E42_RS13580 () | 2616367..2616966 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E42_RS13585 () | 2617031..2618344 | + | 1314 | WP_137049508.1 | ISNCY family transposase KIS | Transposase |
| C9E42_RS13590 () | 2618346..2618615 | + | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E42_RS13595 () | 2618729..2619304 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E42_RS13600 () | 2619377..2620006 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E42_RS13605 () | 2620088..2620729 | + | 642 | WP_001143804.1 | hypothetical protein | VF |
| C9E42_RS13615 () | 2620891..2621133 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E42_RS13620 () | 2621265..2622548 | + | 1284 | Protein_2597 | MHS family MFS transporter YdfJ | - |
| C9E42_RS13625 () | 2622637..2624097 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E42_RS13630 () | 2624133..2624336 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E42_RS13635 () | 2624513..2625199 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E42_RS13640 () | 2625288..2626034 | - | 747 | WP_000636568.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| C9E42_RS13645 () | 2626171..2628216 | + | 2046 | WP_001302117.1 | peptidyl-dipeptidase Dcp | - |
| C9E42_RS13650 () | 2628261..2628779 | - | 519 | WP_001024796.1 | 2-oxo-tetronate isomerase | - |
| C9E42_RS13655 () | 2629055..2629447 | + | 393 | WP_000671724.1 | YdeI family stress tolerance OB fold protein | - |
| C9E42_RS13660 () | 2629702..2630592 | + | 891 | WP_000592852.1 | diguanylate cyclase DgcZ | - |
| C9E42_RS28650 () | 2630707..2630811 | - | 105 | WP_211180496.1 | protein MgtT | - |
| C9E42_RS13665 () | 2630811..2630906 | - | 96 | WP_000901365.1 | protein MgtS | - |
| C9E42_RS13670 () | 2631014..2631985 | - | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| C9E42_RS13675 () | 2632080..2632475 | + | 396 | WP_001271101.1 | rhodanese | - |
| C9E42_RS13680 () | 2632516..2633703 | - | 1188 | WP_001054199.1 | efflux MFS transporter YdeE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|