MGE detailed information
MGE type: Prophage MGE length: 71725 bp
Accession: NZ_CP028674 Location: 4252484..4324208 Organism: Escherichia coli strain 115 Replicon: chromosome
Accession: NZ_CP028674 Location: 4252484..4324208 Organism: Escherichia coli strain 115 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E44_RS21690 () | 4248776..4249732 | + | 957 | WP_000121344.1 | molybdenum cofactor insertion chaperone PaoD | - |
| C9E44_RS21695 () | 4249911..4251038 | - | 1128 | WP_000171065.1 | MFS transporter | - |
| C9E44_RS21700 () | 4251180..4252238 | - | 1059 | WP_001303808.1 | alpha/beta hydrolase | - |
| C9E44_RS21705 () | 4252484..4253386 | + | 903 | WP_010917758.1 | HTH-type transcriptional regulator PgrR | VF |
| C9E44_RS21715 () | 4254089..4254367 | - | 279 | WP_001301751.1 | hypothetical protein | - |
| C9E44_RS21720 () | 4254534..4255256 | - | 723 | WP_000361969.1 | putative oxidoreductase | VF |
| C9E44_RS21725 () | 4255355..4256254 | + | 900 | WP_000687183.1 | HTH-type transcriptional regulator PgrR | VF |
| C9E44_RS21730 () | 4256930..4257886 | + | 957 | WP_000205213.1 | hypothetical protein | - |
| C9E44_RS21735 () | 4258019..4260352 | - | 2334 | WP_000016225.1 | toprim domain-containing protein | - |
| C9E44_RS21740 () | 4260366..4260689 | - | 324 | WP_000562750.1 | DUF5375 family protein | - |
| C9E44_RS21745 () | 4260689..4260910 | - | 222 | WP_001071227.1 | hypothetical protein | - |
| C9E44_RS21750 () | 4260907..4261464 | - | 558 | WP_000973389.1 | host cell division inhibitor Icd-like protein | - |
| C9E44_RS21755 () | 4261461..4261721 | - | 261 | WP_001244581.1 | AlpA family transcriptional regulator | - |
| C9E44_RS21760 () | 4262655..4263407 | + | 753 | WP_000154958.1 | septation initiation protein | - |
| C9E44_RS21765 () | 4263404..4263955 | + | 552 | WP_000968317.1 | Polarity suppression protein | - |
| C9E44_RS21770 () | 4263961..4264233 | + | 273 | WP_001185340.1 | ogr/Delta-like zinc finger family protein | - |
| C9E44_RS21780 () | 4264643..4265209 | - | 567 | WP_000350115.1 | hypothetical protein | - |
| C9E44_RS21785 () | 4265209..4265799 | - | 591 | WP_000647284.1 | hypothetical protein | - |
| C9E44_RS21790 () | 4265830..4266462 | - | 633 | WP_000999326.1 | AAA family ATPase | - |
| C9E44_RS21795 () | 4266455..4266913 | - | 459 | WP_000251694.1 | hypothetical protein | - |
| C9E44_RS21800 () | 4266913..4267530 | - | 618 | WP_001303996.1 | hypothetical protein | - |
| C9E44_RS21805 () | 4267503..4267919 | - | 417 | WP_000082144.1 | hypothetical protein | - |
| C9E44_RS21810 () | 4267923..4269104 | - | 1182 | WP_001130487.1 | Prophage integrase IntS ; Integrase | Integrase |
| C9E44_RS21815 () | 4269591..4270025 | + | 435 | Protein_4156 | IS3 family transposase ISEc48 | Transposase |
| C9E44_RS21820 () | 4270067..4270810 | - | 744 | WP_000246059.1 | AraC family transcriptional regulator | - |
| C9E44_RS21825 () | 4271635..4272408 | + | 774 | WP_000355484.1 | hypothetical protein | - |
| C9E44_RS21830 () | 4272469..4273023 | - | 555 | WP_000905124.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| C9E44_RS21835 () | 4273054..4273464 | + | 411 | WP_001145350.1 | hypothetical protein | - |
| C9E44_RS21840 () | 4273485..4273928 | + | 444 | WP_001008234.1 | tail fiber assembly protein | - |
| C9E44_RS21845 () | 4273900..4274502 | - | 603 | WP_000368084.1 | tail fiber assembly protein | - |
| C9E44_RS21850 () | 4274502..4275272 | - | 771 | WP_000554706.1 | phage tail protein | - |
| C9E44_RS21855 () | 4275276..4275860 | - | 585 | WP_000383550.1 | YmfQ family protein | - |
| C9E44_RS21860 () | 4275851..4276909 | - | 1059 | WP_000785302.1 | baseplate J/gp47 family protein | - |
| C9E44_RS21865 () | 4276896..4277321 | - | 426 | WP_000424732.1 | phage GP46 family protein | - |
| C9E44_RS21870 () | 4277321..4277869 | - | 549 | WP_001259066.1 | phage baseplate assembly protein V | - |
| C9E44_RS21875 () | 4277869..4278948 | - | 1080 | WP_000999513.1 | baseplate protein | - |
| C9E44_RS21880 () | 4278945..4280273 | - | 1329 | WP_000219910.1 | DNA circularization N-terminal domain-containing protein | - |
| C9E44_RS21885 () | 4280334..4282169 | - | 1836 | WP_000807197.1 | phage tail tape measure protein | - |
| C9E44_RS21895 () | 4282311..4282580 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| C9E44_RS21900 () | 4282580..4282936 | - | 357 | WP_000090993.1 | phage tail tube protein | - |
| C9E44_RS21905 () | 4282936..4284432 | - | 1497 | WP_000155728.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C9E44_RS21910 () | 4284416..4284586 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| C9E44_RS21915 () | 4284595..4285155 | - | 561 | WP_000779288.1 | hypothetical protein | - |
| C9E44_RS21920 () | 4285152..4285658 | - | 507 | WP_000224836.1 | hypothetical protein | - |
| C9E44_RS21925 () | 4285633..4286043 | - | 411 | WP_000702395.1 | phage head closure protein | - |
| C9E44_RS21930 () | 4286040..4286363 | - | 324 | WP_000924828.1 | head-tail connector protein | - |
| C9E44_RS21935 () | 4286442..4287671 | - | 1230 | WP_000766100.1 | phage major capsid protein | - |
| C9E44_RS21940 () | 4287682..4288284 | - | 603 | WP_000999805.1 | HK97 family phage prohead protease | - |
| C9E44_RS21945 () | 4288277..4289503 | - | 1227 | WP_000923141.1 | phage portal protein | - |
| C9E44_RS28065 () | 4289493..4289654 | - | 162 | WP_000838374.1 | hypothetical protein | - |
| C9E44_RS21950 () | 4289651..4291147 | - | 1497 | WP_128484532.1 | terminase large subunit | - |
| C9E44_RS21955 () | 4291381..4291875 | - | 495 | WP_000929175.1 | phage terminase small subunit P27 family | - |
| C9E44_RS21960 () | 4292001..4292351 | - | 351 | WP_001135207.1 | HNH endonuclease | - |
| C9E44_RS21970 () | 4292877..4293170 | + | 294 | WP_000738423.1 | increased serum survival lipoprotein Iss | - |
| C9E44_RS21975 () | 4293261..4293443 | - | 183 | WP_001228695.1 | prophage lysis lipoprotein RzoD | - |
| C9E44_RS21980 () | 4293660..4294136 | - | 477 | WP_001197766.1 | glycoside hydrolase family protein | - |
| C9E44_RS21985 () | 4294140..4294475 | - | 336 | WP_001120501.1 | phage holin, lambda family | - |
| C9E44_RS21990 () | 4294612..4294905 | - | 294 | WP_001449601.1 | site-specific DNA-methyltransferase | - |
| C9E44_RS21995 () | 4295184..4295417 | - | 234 | WP_001310393.1 | hypothetical protein | - |
| C9E44_RS22000 () | 4295561..4296100 | - | 540 | WP_000484663.1 | hypothetical protein | - |
| C9E44_RS22005 () | 4296315..4297067 | - | 753 | WP_001008431.1 | antitermination protein | - |
| C9E44_RS22010 () | 4297081..4298070 | - | 990 | WP_001360050.1 | DUF968 domain-containing protein | - |
| C9E44_RS22015 () | 4298078..4298887 | - | 810 | WP_001061444.1 | KilA-N domain-containing protein | - |
| C9E44_RS22020 () | 4298907..4299296 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E44_RS22025 () | 4299293..4299619 | - | 327 | WP_000210141.1 | LexA family transcriptional regulator | - |
| C9E44_RS22030 () | 4299616..4300269 | - | 654 | WP_001303054.1 | phage N-6-adenine-methyltransferase | - |
| C9E44_RS22035 () | 4300269..4300763 | - | 495 | WP_072141203.1 | PerC family transcriptional regulator | - |
| C9E44_RS22040 () | 4300760..4301701 | - | 942 | WP_000104949.1 | helix-turn-helix domain-containing protein | - |
| C9E44_RS22045 () | 4301691..4301870 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| C9E44_RS22050 () | 4302046..4302597 | - | 552 | WP_000515845.1 | protein YmfL | - |
| C9E44_RS22055 () | 4302590..4302850 | - | 261 | WP_001191674.1 | helix-turn-helix transcriptional regulator | - |
| C9E44_RS22065 () | 4302948..4303640 | + | 693 | WP_001020634.1 | helix-turn-helix transcriptional regulator | - |
| C9E44_RS22070 () | 4303918..4304214 | + | 297 | WP_000917896.1 | hypothetical protein | - |
| C9E44_RS22090 () | 4306205..4306741 | + | 537 | WP_000008235.1 | 5'-deoxynucleotidase | - |
| C9E44_RS22095 () | 4306732..4307094 | + | 363 | WP_001242749.1 | phage protein | - |
| C9E44_RS22100 () | 4307094..4307399 | + | 306 | WP_000206732.1 | hypothetical protein | - |
| C9E44_RS22110 () | 4307626..4308789 | + | 1164 | WP_000051887.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E44_RS22120 () | 4308994..4310247 | - | 1254 | WP_000893282.1 | glutamate-5-semialdehyde dehydrogenase | - |
| C9E44_RS22125 () | 4310259..4311362 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| C9E44_RS22130 () | 4311650..4312705 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| C9E44_RS22135 () | 4312744..4313145 | - | 402 | WP_000174701.1 | sigma factor-binding protein Crl | - |
| C9E44_RS22140 () | 4313203..4314447 | - | 1245 | WP_000189536.1 | esterase FrsA | - |
| - () | 4313863..4313943 | - | 81 | NuclAT_11 | - | - |
| - () | 4313863..4313943 | - | 81 | NuclAT_11 | - | - |
| - () | 4313863..4313943 | - | 81 | NuclAT_11 | - | - |
| - () | 4313863..4313943 | - | 81 | NuclAT_11 | - | - |
| C9E44_RS22145 () | 4314539..4314997 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| C9E44_RS22150 () | 4315258..4316715 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| C9E44_RS22155 () | 4316772..4317293 | - | 522 | Protein_4218 | peptide chain release factor H | - |
| C9E44_RS22160 () | 4317292..4317495 | - | 204 | Protein_4219 | RNA ligase RtcB family protein | - |
| C9E44_RS22165 () | 4317814..4318266 | - | 453 | WP_001059871.1 | GNAT family N-acetyltransferase | - |
| C9E44_RS22170 () | 4318276..4318674 | - | 399 | WP_001263495.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| C9E44_RS22175 () | 4318677..4318970 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| C9E44_RS22180 () | 4319022..4320077 | - | 1056 | WP_001226186.1 | DNA polymerase IV | - |
| C9E44_RS22185 () | 4320148..4320933 | - | 786 | WP_000207556.1 | Chemotaxis protein LafU | VF |
| C9E44_RS22190 () | 4320905..4322617 | + | 1713 | Protein_4225 | Flagellar biosynthesis protein FlhA | VF |
| C9E44_RS22195 () | 4322762..4323259 | - | 498 | Protein_4226 | REP-associated tyrosine transposase RayT | - |
| C9E44_RS22200 () | 4323435..4324208 | - | 774 | WP_000543891.1 | Murein DD-endopeptidase MepH | VF |
| C9E44_RS22205 () | 4324394..4324654 | + | 261 | WP_000729705.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| C9E44_RS22210 () | 4324673..4324933 | + | 261 | WP_001303998.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| C9E44_RS22215 () | 4325089..4325829 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| C9E44_RS22220 () | 4325800..4326567 | - | 768 | WP_001301698.1 | class II glutamine amidotransferase | - |
| C9E44_RS22225 () | 4326672..4327250 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|