MGE detailed information
MGE type: Conjugative plasmid MGE length: 88018 bp
Accession: NZ_CP028611 Location: 1..88018 Organism: Escherichia coli strain 142 Replicon: plasmid pTA142-2
Accession: NZ_CP028611 Location: 1..88018 Organism: Escherichia coli strain 142 Replicon: plasmid pTA142-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E66_RS28115 () | 700..1572 | + | 873 | WP_000729440.1 | incFII family plasmid replication initiator RepA | - |
| C9E66_RS28125 () | 2477..2761 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C9E66_RS28130 () | 2761..3036 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E66_RS28135 () | 3142..3423 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| C9E66_RS28145 () | 3614..3880 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| C9E66_RS28150 () | 3880..4062 | - | 183 | Protein_5 | hypothetical protein | - |
| C9E66_RS28155 () | 4118..4720 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| C9E66_RS28165 () | 5074..6420 | + | 1347 | WP_001132021.1 | hypothetical protein | - |
| C9E66_RS29465 () | 6919..7221 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| C9E66_RS28180 () | 7218..7844 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| C9E66_RS28185 () | 8024..9295 | - | 1272 | WP_052918978.1 | Y-family DNA polymerase | - |
| C9E66_RS28190 () | 9295..9732 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C9E66_RS28195 () | 9729..9977 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| C9E66_RS28205 () | 10395..11297 | + | 903 | WP_077697304.1 | DUF1281 domain-containing protein | - |
| C9E66_RS28210 () | 11294..11605 | + | 312 | WP_032142517.1 | hypothetical protein | - |
| C9E66_RS28215 () | 11834..13534 | - | 1701 | WP_136752477.1 | group II intron reverse transcriptase/maturase | - |
| C9E66_RS28220 () | 14114..14767 | + | 654 | WP_016235977.1 | DNA methylase | - |
| C9E66_RS28225 () | 14768..14989 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| C9E66_RS28230 () | 15003..15437 | + | 435 | WP_000274442.1 | DUF1380 family protein | - |
| C9E66_RS28235 () | 15482..16252 | + | 771 | WP_001006220.1 | hypothetical protein | - |
| C9E66_RS28250 () | 16791..17093 | + | 303 | WP_072105978.1 | antirestriction protein | - |
| C9E66_RS28255 () | 17140..17559 | + | 420 | WP_000271736.1 | DUF1380 family protein | - |
| C9E66_RS28260 () | 17559..17750 | + | 192 | WP_001027048.1 | hypothetical protein | - |
| C9E66_RS28265 () | 17825..18067 | + | 243 | WP_096844752.1 | hypothetical protein | - |
| C9E66_RS28275 () | 18504..19031 | + | 528 | WP_032275048.1 | single-stranded DNA-binding protein | - |
| C9E66_RS28280 () | 19089..19322 | + | 234 | WP_032275049.1 | DUF905 domain-containing protein | - |
| C9E66_RS28285 () | 19386..21344 | + | 1959 | WP_137052472.1 | ParB/RepB/Spo0J family partition protein | - |
| C9E66_RS28290 () | 21399..21833 | + | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| C9E66_RS28295 () | 21830..22549 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| C9E66_RS28300 () | 22546..23142 | + | 597 | WP_137052474.1 | hypothetical protein | - |
| C9E66_RS28310 () | 23604..24104 | + | 501 | WP_032275071.1 | antirestriction protein ArdA | - |
| C9E66_RS28320 () | 24837..25271 | + | 435 | WP_000218847.1 | hypothetical protein | - |
| C9E66_RS28325 () | 25364..25630 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| C9E66_RS28330 () | 25695..26621 | + | 927 | WP_089079275.1 | Recombination-promoting nuclease RpnA | VF |
| C9E66_RS28335 () | 26621..26854 | + | 234 | WP_077789038.1 | hypothetical protein | - |
| C9E66_RS28340 () | 26885..27136 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| C9E66_RS28355 () | 27715..28563 | + | 849 | WP_089578396.1 | DUF4942 domain-containing protein | - |
| C9E66_RS28360 () | 28648..28983 | - | 336 | WP_001599393.1 | hypothetical protein | - |
| C9E66_RS28365 () | 29216..29548 | + | 333 | WP_001291056.1 | hypothetical protein | - |
| C9E66_RS28370 () | 29560..32280 | + | 2721 | WP_137052476.1 | Protein TraI | Relaxase |
| C9E66_RS28375 () | 32501..34801 | - | 2301 | WP_088137423.1 | TraM recognition domain-containing protein | - |
| C9E66_RS28380 () | 34782..35909 | - | 1128 | WP_119121014.1 | DsbC family protein | - |
| C9E66_RS28385 () | 35906..37177 | - | 1272 | WP_040116984.1 | IncI1-type conjugal transfer protein TrbA | - |
| C9E66_RS28400 () | 37959..38282 | - | 324 | WP_000323305.1 | hypothetical protein | - |
| C9E66_RS28405 () | 38316..38507 | - | 192 | WP_000264909.1 | hypothetical protein | - |
| C9E66_RS28410 () | 38517..38882 | - | 366 | WP_001379349.1 | hypothetical protein | - |
| C9E66_RS28425 () | 39526..40011 | - | 486 | WP_001563232.1 | thermonuclease family protein | - |
| C9E66_RS28430 () | 40160..40783 | + | 624 | WP_001158019.1 | hypothetical protein | - |
| C9E66_RS28435 () | 40871..41326 | + | 456 | WP_047086903.1 | DUF2569 family protein | - |
| C9E66_RS28440 () | 41526..43061 | + | 1536 | WP_175400450.1 | phosphoethanolamine transferase | - |
| C9E66_RS28445 () | 43154..43396 | - | 243 | WP_137052478.1 | hypothetical protein | - |
| C9E66_RS28450 () | 43729..43881 | + | 153 | WP_033800779.1 | Hok/Gef family protein | - |
| C9E66_RS28455 () | 43878..44039 | - | 162 | WP_001138649.1 | hypothetical protein | - |
| C9E66_RS28460 () | 44195..44839 | - | 645 | WP_137052480.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C9E66_RS28465 () | 44926..47091 | - | 2166 | WP_000691803.1 | DotA/TraY family protein | - |
| C9E66_RS28470 () | 47164..47733 | - | 570 | WP_000650755.1 | conjugal transfer protein TraX | - |
| C9E66_RS28475 () | 47730..48935 | - | 1206 | WP_001189542.1 | conjugal transfer protein TraW | - |
| C9E66_RS28480 () | 48893..49513 | - | 621 | WP_137052482.1 | conjugal transfer protein TraV | - |
| C9E66_RS28485 () | 49513..52557 | - | 3045 | WP_001024760.1 | hypothetical protein | - |
| C9E66_RS28490 () | 52782..53327 | + | 546 | WP_001369268.1 | hypothetical protein | - |
| C9E66_RS28495 () | 53300..53680 | - | 381 | WP_000690882.1 | hypothetical protein | - |
| C9E66_RS29470 () | 53680..54039 | - | 360 | WP_000379509.1 | hypothetical protein | - |
| C9E66_RS28500 () | 54098..54916 | - | 819 | WP_072112391.1 | conjugal transfer protein TraT | - |
| C9E66_RS28505 () | 54831..55082 | - | 252 | WP_001277575.1 | hypothetical protein | - |
| C9E66_RS28510 () | 55139..55537 | - | 399 | WP_000086067.1 | hypothetical protein | - |
| C9E66_RS28515 () | 55586..56113 | - | 528 | WP_001379391.1 | conjugal transfer protein TraQ | - |
| C9E66_RS28520 () | 56113..56826 | - | 714 | WP_000787008.1 | conjugal transfer protein TraP | - |
| C9E66_RS28525 () | 56823..58154 | - | 1332 | WP_001272016.1 | conjugal transfer protein TraO | - |
| C9E66_RS28530 () | 58158..59132 | - | 975 | WP_001165564.1 | hypothetical protein | VF |
| C9E66_RS28535 () | 59143..59838 | - | 696 | WP_001287263.1 | DotI/IcmL family type IV secretion protein | - |
| C9E66_RS28540 () | 59850..60200 | - | 351 | WP_001056369.1 | hypothetical protein | - |
| C9E66_RS28545 () | 60217..64233 | - | 4017 | WP_000842446.1 | DNA primase | - |
| C9E66_RS28550 () | 64297..64587 | - | 291 | WP_000817799.1 | hypothetical protein | - |
| C9E66_RS28555 () | 64584..65732 | - | 1149 | WP_000625246.1 | putative protein YggR | VF |
| C9E66_RS28560 () | 65716..66552 | - | 837 | WP_000848138.1 | hypothetical protein | VF |
| C9E66_RS28565 () | 66549..67001 | - | 453 | WP_001081198.1 | DotD/TraH family lipoprotein | - |
| C9E66_RS29475 () | 67050..67220 | - | 171 | WP_000482367.1 | hypothetical protein | - |
| C9E66_RS28570 () | 67360..68562 | - | 1203 | WP_000980149.1 | conjugal transfer protein TraF | - |
| C9E66_RS28575 () | 68651..69472 | - | 822 | WP_000804092.1 | hypothetical protein | - |
| C9E66_RS28580 () | 69732..70052 | + | 321 | WP_000695055.1 | hypothetical protein | - |
| C9E66_RS28585 () | 70143..70433 | - | 291 | WP_000681898.1 | hypothetical protein | - |
| C9E66_RS28590 () | 70475..71644 | - | 1170 | WP_000486830.1 | site-specific integrase | - |
| C9E66_RS28605 () | 72259..73623 | - | 1365 | WP_052918932.1 | hypothetical protein | VF |
| C9E66_RS28610 () | 73628..74263 | - | 636 | WP_000478594.1 | prepilin peptidase | - |
| C9E66_RS28615 () | 74282..74755 | - | 474 | WP_000870986.1 | hypothetical protein | VF |
| C9E66_RS28620 () | 74809..75345 | - | 537 | WP_001011158.1 | cleavage protein | - |
| C9E66_RS28625 () | 75419..76519 | - | 1101 | WP_000670138.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| C9E66_RS28630 () | 76521..78029 | - | 1509 | WP_000886636.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| C9E66_RS28635 () | 78114..78566 | - | 453 | WP_001112925.1 | type IV pilus biogenesis protein PilP | - |
| C9E66_RS28640 () | 78556..79851 | - | 1296 | WP_000129888.1 | type 4b pilus protein PilO2 | - |
| C9E66_RS28645 () | 79872..81491 | - | 1620 | WP_001034998.1 | Outer membrane lipoprotein BfpB | VF |
| C9E66_RS28650 () | 81522..81959 | - | 438 | WP_000539685.1 | type IV pilus biogenesis protein PilM | - |
| C9E66_RS28655 () | 81964..83031 | - | 1068 | WP_021511700.1 | hypothetical protein | VF |
| C9E66_RS28660 () | 83188..83523 | - | 336 | WP_024174020.1 | hypothetical protein | - |
| C9E66_RS28665 () | 83640..83957 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| C9E66_RS28670 () | 83963..85657 | - | 1695 | WP_032357848.1 | flotillin family protein | - |
| C9E66_RS28675 () | 85684..86304 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| C9E66_RS28685 () | 86571..87236 | - | 666 | WP_001536608.1 | hypothetical protein | - |
| C9E66_RS28690 () | 87377..88018 | - | 642 | WP_000335842.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|