MGE detailed information
MGE type: Conjugative plasmid MGE length: 57277 bp
Accession: NZ_CP028489 Location: 1..57277 Organism: Yersinia massiliensis strain GTA Replicon: plasmid unnamed2
Accession: NZ_CP028489 Location: 1..57277 Organism: Yersinia massiliensis strain GTA Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA391_RS23800 () | 1..2961 | + | 2961 | WP_108088353.1 | DUF1738 domain-containing protein | - |
| DA391_RS23805 () | 3151..3921 | - | 771 | WP_108088354.1 | tyrosine-type recombinase/integrase | - |
| DA391_RS23810 () | 4257..4973 | + | 717 | WP_108088355.1 | hypothetical protein | - |
| DA391_RS23815 () | 4984..5763 | + | 780 | WP_108088356.1 | hypothetical protein | - |
| DA391_RS23820 () | 5828..6493 | + | 666 | WP_108088357.1 | CPBP family intramembrane metalloprotease | - |
| DA391_RS23825 () | 6730..7383 | + | 654 | WP_108088358.1 | hypothetical protein | - |
| DA391_RS23835 () | 7629..8108 | + | 480 | WP_108088360.1 | type VI secretion system tube protein Hcp | - |
| DA391_RS23840 () | 8585..8974 | + | 390 | WP_108088361.1 | hypothetical protein | - |
| DA391_RS23845 () | 9210..9410 | + | 201 | WP_108088362.1 | entry exclusion lipoprotein TrbK | - |
| DA391_RS23850 () | 10060..10407 | - | 348 | WP_108088363.1 | single-stranded DNA-binding protein | - |
| DA391_RS23855 () | 10487..10735 | - | 249 | WP_011988456.1 | hypothetical protein | - |
| DA391_RS23860 () | 10867..11166 | - | 300 | WP_108088364.1 | conjugal transfer protein | - |
| DA391_RS23865 () | 11200..11685 | - | 486 | WP_108088365.1 | hypothetical protein | - |
| DA391_RS23870 () | 11710..12216 | - | 507 | WP_011988434.1 | lytic transglycosylase domain-containing protein | - |
| DA391_RS23875 () | 12235..12858 | - | 624 | WP_108088366.1 | prepilin peptidase | - |
| DA391_RS23880 () | 12870..13301 | - | 432 | WP_108088367.1 | type IV pilus biogenesis protein PilM | - |
| DA391_RS23885 () | 13306..13707 | - | 402 | WP_108088368.1 | hypothetical protein | - |
| DA391_RS23890 () | 13833..14465 | - | 633 | WP_108088369.1 | hypothetical protein | - |
| DA391_RS23895 () | 14647..15714 | - | 1068 | Protein_19 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| DA391_RS23900 () | 15727..16680 | - | 954 | WP_108088370.1 | Flp pilus assembly complex ATPase component TadA | - |
| DA391_RS23905 () | 16696..17202 | - | 507 | WP_108088371.1 | pilus assembly protein PilS | - |
| DA391_RS23910 () | 17220..18284 | - | 1065 | WP_108088372.1 | type II secretion system F family protein | - |
| DA391_RS23915 () | 18277..19809 | - | 1533 | WP_108088373.1 | Flp pilus assembly complex ATPase component TadA | - |
| DA391_RS23920 () | 19806..20249 | - | 444 | WP_108088374.1 | type IV pilus biogenesis protein PilP | - |
| DA391_RS23925 () | 20236..21570 | - | 1335 | WP_108088375.1 | type 4b pilus protein PilO2 | - |
| DA391_RS23930 () | 21580..23289 | - | 1710 | WP_108088376.1 | PilN family type IVB pilus formation outer membrane protein | - |
| DA391_RS23935 () | 23302..24234 | - | 933 | WP_108088377.1 | TcpQ domain-containing protein | - |
| DA391_RS23940 () | 24257..24736 | - | 480 | WP_108088378.1 | transcriptional activator | - |
| DA391_RS23945 () | 24855..25475 | - | 621 | WP_108088379.1 | conjugal transfer protein TrbN | - |
| DA391_RS23950 () | 25528..26892 | - | 1365 | WP_206186980.1 | P-type conjugative transfer protein TrbL | - |
| DA391_RS23955 () | 26897..27097 | - | 201 | WP_159074590.1 | entry exclusion lipoprotein TrbK | - |
| DA391_RS23960 () | 27112..27888 | - | 777 | WP_011988458.1 | P-type conjugative transfer protein TrbJ | - |
| DA391_RS23965 () | 27906..29291 | - | 1386 | WP_108088382.1 | TrbI/VirB10 family protein | - |
| DA391_RS23970 () | 29296..29745 | - | 450 | WP_108088383.1 | conjugal transfer protein TrbH | - |
| DA391_RS23975 () | 29748..30635 | - | 888 | WP_108088384.1 | P-type conjugative transfer protein TrbG | - |
| DA391_RS23980 () | 30650..31258 | - | 609 | WP_206186978.1 | conjugal transfer protein TrbF | - |
| DA391_RS24400 () | 31231..31449 | - | 219 | WP_206186979.1 | hypothetical protein | - |
| DA391_RS23985 () | 31446..33983 | - | 2538 | WP_108088385.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| DA391_RS23990 () | 33976..34290 | - | 315 | WP_011988450.1 | conjugal transfer protein TrbD | - |
| DA391_RS23995 () | 34293..34673 | - | 381 | WP_011988438.1 | TrbC/VirB2 family protein | - |
| DA391_RS24000 () | 34686..35645 | - | 960 | WP_108088403.1 | P-type conjugative transfer ATPase TrbB | - |
| DA391_RS24005 () | 35804..36172 | - | 369 | WP_108088386.1 | transcriptional regulator | - |
| DA391_RS24010 () | 36749..36970 | + | 222 | WP_108088387.1 | hypothetical protein | - |
| DA391_RS24015 () | 36967..37878 | + | 912 | WP_108088388.1 | zeta toxin family protein | - |
| DA391_RS24020 () | 38823..39113 | + | 291 | WP_011988472.1 | CopG family transcriptional regulator | Antitoxin Detail |
| DA391_RS24025 () | 39101..39403 | + | 303 | WP_011988449.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DA391_RS24030 () | 39683..40720 | + | 1038 | WP_108088389.1 | Replication protein | - |
| DA391_RS24035 () | 41758..42075 | + | 318 | WP_108088390.1 | protein kleE | - |
| DA391_RS24040 () | 42270..42575 | + | 306 | WP_108088391.1 | transcriptional regulator KorA | - |
| DA391_RS24045 () | 42572..43342 | + | 771 | WP_108088392.1 | ParA family protein | - |
| DA391_RS24050 () | 43339..44391 | + | 1053 | WP_108088393.1 | ParB/RepB/Spo0J family partition protein | - |
| DA391_RS24055 () | 44505..44825 | + | 321 | WP_011988470.1 | hypothetical protein | - |
| DA391_RS24060 () | 44913..45152 | - | 240 | WP_011988467.1 | helix-turn-helix domain-containing protein | - |
| DA391_RS24065 () | 45185..45610 | - | 426 | WP_167398253.1 | hypothetical protein | - |
| DA391_RS24075 () | 46457..46807 | + | 351 | WP_108088396.1 | conjugal transfer protein TraO | - |
| DA391_RS24080 () | 46838..47449 | + | 612 | WP_108088397.1 | hypothetical protein | - |
| DA391_RS24085 () | 47613..48053 | - | 441 | WP_108088398.1 | conjugal transfer protein TraM | - |
| DA391_RS24090 () | 48050..48778 | - | 729 | WP_011988444.1 | conjugal transfer protein TraL | - |
| DA391_RS24095 () | 48790..49167 | - | 378 | WP_011988429.1 | TraK family protein | - |
| DA391_RS24100 () | 49501..49857 | + | 357 | WP_011988427.1 | conjugal transfer transcriptional regulator TraJ | - |
| DA391_RS24105 () | 49895..52516 | + | 2622 | WP_108088399.1 | relaxase/mobilization nuclease domain-containing protein | - |
| DA391_RS24110 () | 52513..54450 | + | 1938 | WP_011988415.1 | type IV secretory system conjugative DNA transfer family protein | - |
| DA391_RS24115 () | 54447..54971 | + | 525 | WP_108088400.1 | conjugative transfer signal peptidase TraF | - |
| DA391_RS24120 () | 55007..57046 | + | 2040 | WP_108088401.1 | DNA topoisomerase 3 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|