MGE detailed information
MGE type: Prophage MGE length: 87896 bp
Accession: NZ_CP028432 Location: 1648118..1736013 Organism: Escherichia coli strain RM9975 Replicon: chromosome
Accession: NZ_CP028432 Location: 1648118..1736013 Organism: Escherichia coli strain RM9975 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM9975_RS08780 () | 1643348..1644256 | + | 909 | WP_000885466.1 | LysR family transcriptional regulator | - |
| ECRM9975_RS08785 () | 1644586..1645149 | + | 564 | WP_001046821.1 | DNA endonuclease SmrA | - |
| ECRM9975_RS08790 () | 1645170..1646402 | - | 1233 | WP_000628065.1 | diguanylate cyclase DgcM | - |
| ECRM9975_RS29630 () | 1646596..1646643 | + | 48 | WP_211180494.1 | protein YnaN | - |
| ECRM9975_RS08795 () | 1646657..1647640 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| ECRM9975_RS08800 () | 1647915..1648088 | + | 174 | WP_001296046.1 | hypothetical protein | - |
| ECRM9975_RS08805 () | 1648118..1649491 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| ECRM9975_RS08810 () | 1649620..1650555 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| ECRM9975_RS08815 () | 1650607..1651842 | - | 1236 | WP_000040839.1 | putative ATP-dependent helicase DinG ; Integrase | Integrase |
| ECRM9975_RS08820 () | 1651844..1652059 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| ECRM9975_RS08825 () | 1652159..1652347 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 1652163..1652341 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1652163..1652341 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1652163..1652341 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1652163..1652341 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| ECRM9975_RS08830 () | 1652385..1652534 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| ECRM9975_RS08835 () | 1652590..1653399 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| ECRM9975_RS08840 () | 1653392..1655992 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| ECRM9975_RS08845 () | 1656094..1656369 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| ECRM9975_RS08850 () | 1656444..1656614 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| ECRM9975_RS08855 () | 1656614..1656835 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| ECRM9975_RS08865 () | 1657277..1657765 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| ECRM9975_RS08870 () | 1657762..1657917 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| ECRM9975_RS08875 () | 1657928..1658107 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| ECRM9975_RS08885 () | 1658350..1658769 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| ECRM9975_RS08890 () | 1658849..1659103 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| ECRM9975_RS08895 () | 1659100..1659522 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| ECRM9975_RS08900 () | 1659600..1660388 | + | 789 | WP_001304174.1 | hypothetical protein | - |
| ECRM9975_RS08905 () | 1660395..1661141 | + | 747 | WP_000788980.1 | ATP-binding protein | - |
| ECRM9975_RS08910 () | 1661164..1661925 | + | 762 | WP_000450712.1 | DUF1627 domain-containing protein | - |
| ECRM9975_RS08915 () | 1661941..1662363 | + | 423 | WP_001141110.1 | DUF977 family protein | - |
| ECRM9975_RS08920 () | 1662469..1662681 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| ECRM9975_RS08925 () | 1662714..1662931 | + | 218 | Protein_1621 | DUF4014 family protein | - |
| ECRM9975_RS08930 () | 1662933..1663196 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| ECRM9975_RS08935 () | 1663207..1663368 | + | 162 | WP_000208018.1 | hypothetical protein | - |
| ECRM9975_RS08940 () | 1663447..1663692 | + | 246 | WP_000365100.1 | hypothetical protein | - |
| ECRM9975_RS08945 () | 1664124..1665275 | + | 1152 | WP_001100703.1 | DNA cytosine methyltransferase | - |
| ECRM9975_RS08950 () | 1665243..1666232 | - | 990 | WP_000016656.1 | hypothetical protein | - |
| ECRM9975_RS08955 () | 1666232..1667623 | - | 1392 | WP_000138556.1 | ATP-binding protein | - |
| ECRM9975_RS08960 () | 1668123..1668722 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| ECRM9975_RS08965 () | 1668722..1669012 | + | 291 | WP_000247761.1 | DUF1364 domain-containing protein | - |
| ECRM9975_RS08970 () | 1669009..1669563 | + | 555 | WP_000640158.1 | DUF1133 family protein | - |
| ECRM9975_RS08985 () | 1670125..1670556 | + | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| ECRM9975_RS08990 () | 1670553..1670808 | + | 256 | Protein_1632 | DUF3927 family protein | - |
| ECRM9975_RS08995 () | 1671127..1672980 | + | 1854 | WP_000143077.1 | SASA family carbohydrate esterase | - |
| ECRM9975_RS09000 () | 1673130..1673345 | + | 216 | WP_000284522.1 | class II holin family protein | - |
| ECRM9975_RS09005 () | 1673350..1673694 | + | 345 | WP_000731221.1 | YdfR family protein | - |
| ECRM9975_RS09010 () | 1673745..1674278 | + | 534 | WP_000992086.1 | lysozyme | - |
| ECRM9975_RS09015 () | 1674552..1675091 | + | 540 | WP_001344811.1 | phage antirepressor KilAC domain-containing protein | - |
| ECRM9975_RS09025 () | 1676384..1676560 | + | 177 | WP_000285960.1 | phage antirepressor KilAC domain-containing protein | - |
| ECRM9975_RS29105 () | 1676655..1676786 | + | 132 | WP_001280923.1 | hypothetical protein | - |
| ECRM9975_RS29115 () | 1677009..1677194 | + | 186 | WP_012817877.1 | Rz1 family lipoprotein | - |
| ECRM9975_RS09045 () | 1677595..1677921 | + | 327 | WP_000828070.1 | TonB family protein | - |
| ECRM9975_RS09050 () | 1678053..1678253 | - | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| ECRM9975_RS09055 () | 1678295..1678660 | + | 366 | WP_000829192.1 | HNH endonuclease | - |
| ECRM9975_RS09065 () | 1678949..1679512 | + | 564 | WP_000958380.1 | terminase small subunit | - |
| ECRM9975_RS09070 () | 1679509..1681170 | + | 1662 | WP_001411753.1 | terminase large subunit | - |
| ECRM9975_RS09075 () | 1681234..1683171 | + | 1938 | WP_000173011.1 | phage major capsid protein | - |
| ECRM9975_RS09080 () | 1683216..1683437 | + | 222 | WP_001063025.1 | hypothetical protein | - |
| ECRM9975_RS09085 () | 1683383..1685805 | + | 2423 | Protein_1649 | phage portal protein | - |
| ECRM9975_RS09090 () | 1685802..1686128 | + | 327 | WP_000125984.1 | head-tail connector protein | - |
| ECRM9975_RS09095 () | 1686138..1686488 | + | 351 | WP_001007911.1 | phage head closure protein | - |
| ECRM9975_RS09100 () | 1686485..1686931 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| ECRM9975_RS09105 () | 1686928..1687272 | + | 345 | WP_000133393.1 | DUF3168 domain-containing protein | - |
| ECRM9975_RS09110 () | 1687341..1688057 | + | 717 | WP_001275480.1 | immunoglobulin domain-containing protein | - |
| ECRM9975_RS09115 () | 1688063..1688437 | + | 375 | WP_001030060.1 | phage tail assembly chaperone | - |
| ECRM9975_RS09120 () | 1688533..1688742 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| ECRM9975_RS09125 () | 1688794..1692036 | + | 3243 | WP_000212770.1 | phage tail tape measure protein | - |
| ECRM9975_RS09130 () | 1692029..1692370 | + | 342 | WP_000807964.1 | phage tail protein | - |
| ECRM9975_RS09135 () | 1692370..1693068 | + | 699 | WP_001152159.1 | phage minor tail protein L | - |
| ECRM9975_RS09140 () | 1693079..1693822 | + | 744 | WP_000194763.1 | C40 family peptidase | - |
| ECRM9975_RS09145 () | 1693768..1694400 | + | 633 | WP_064732755.1 | tail assembly protein | - |
| ECRM9975_RS09155 () | 1694591..1695118 | - | 528 | WP_000649829.1 | L-arabinose transport system permease protein AraQ | VF |
| ECRM9975_RS09160 () | 1695252..1698725 | + | 3474 | WP_112033817.1 | host specificity protein J | - |
| ECRM9975_RS09165 () | 1698793..1699392 | + | 600 | WP_001228290.1 | Putative ABC transporter substrate-binding protein YesO | VF |
| ECRM9975_RS09170 () | 1699544..1700848 | + | 1305 | WP_000216548.1 | ISNCY family transposase KIS | Transposase |
| ECRM9975_RS09175 () | 1700850..1701119 | + | 270 | WP_001023476.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM9975_RS09180 () | 1701232..1701632 | + | 401 | Protein_1667 | DUF1076 domain-containing protein | - |
| ECRM9975_RS09185 () | 1701612..1702211 | - | 600 | Protein_1668 | hypothetical protein ; Integrase | Integrase |
| ECRM9975_RS09190 () | 1702234..1702356 | + | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM9975_RS09195 () | 1702463..1703374 | + | 912 | WP_000950979.1 | Exo-glucosaminidase LytG | VF |
| ECRM9975_RS09200 () | 1703440..1703879 | + | 440 | Protein_1671 | Putative carboxypeptidase YodJ | VF |
| ECRM9975_RS09215 () | 1705187..1705674 | - | 488 | Protein_1673 | IS256 family transposase ISEic2 | Transposase |
| ECRM9975_RS09220 () | 1706161..1706439 | - | 279 | WP_001303943.1 | hypothetical protein | - |
| ECRM9975_RS09225 () | 1706867..1707013 | + | 147 | WP_001414184.1 | hypothetical protein | - |
| ECRM9975_RS09230 () | 1707150..1707797 | - | 648 | WP_001303944.1 | Inner membrane protein YqiK | VF |
| ECRM9975_RS09235 () | 1707981..1708571 | + | 591 | WP_001144879.1 | putative membrane protein YuaF | VF |
| ECRM9975_RS09240 () | 1708790..1709846 | - | 1057 | Protein_1678 | IS630 family transposase | - |
| ECRM9975_RS29420 () | 1710078..1710728 | + | 651 | WP_001345079.1 | Sensor histidine kinase DcuS | VF |
| ECRM9975_RS09250 () | 1710899..1711134 | + | 236 | Protein_1680 | IS3 family transposase | - |
| ECRM9975_RS09255 () | 1711077..1711430 | - | 354 | WP_001261191.1 | recombinase family protein | - |
| ECRM9975_RS09260 () | 1711521..1712240 | + | 720 | WP_000171274.1 | TonB system transport protein TonB | - |
| ECRM9975_RS09265 () | 1712280..1712678 | - | 399 | WP_112033818.1 | acyl-CoA thioester hydrolase YciA | - |
| ECRM9975_RS09270 () | 1712783..1713322 | - | 540 | WP_000808667.1 | septation protein A | - |
| ECRM9975_RS09275 () | 1713352..1714095 | - | 744 | WP_000028550.1 | envelope biogenesis factor ElyC | - |
| ECRM9975_RS09280 () | 1714123..1714212 | - | 90 | Protein_1686 | YkgJ family cysteine cluster protein | - |
| ECRM9975_RS09285 () | 1714452..1715090 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| ECRM9975_RS09290 () | 1715136..1716266 | - | 1131 | WP_000113674.1 | 4-hydroxythreonine-4-phosphate dehydrogenase ; Integrase | Integrase |
| ECRM9975_RS09295 () | 1716244..1716492 | - | 249 | WP_000113189.1 | excisionase | - |
| ECRM9975_RS09300 () | 1716557..1719028 | - | 2472 | WP_112033819.1 | exonuclease | - |
| ECRM9975_RS09305 () | 1719124..1719312 | - | 189 | WP_000199480.1 | DUF1482 family protein | - |
| ECRM9975_RS09310 () | 1719309..1719497 | - | 189 | WP_000449172.1 | cell division inhibitor | - |
| ECRM9975_RS09320 () | 1720058..1720291 | + | 234 | WP_000920491.1 | hypothetical protein | - |
| ECRM9975_RS09325 () | 1720269..1720676 | - | 408 | WP_000394552.1 | hypothetical protein | - |
| ECRM9975_RS09330 () | 1720699..1720917 | - | 219 | WP_001171894.1 | hypothetical protein | - |
| ECRM9975_RS09335 () | 1720990..1721289 | - | 300 | WP_001240336.1 | hypothetical protein | - |
| ECRM9975_RS09340 () | 1721554..1721961 | - | 408 | WP_000787428.1 | helix-turn-helix domain-containing protein | - |
| ECRM9975_RS09345 () | 1722038..1722264 | + | 227 | Protein_1698 | transcriptional regulator | - |
| ECRM9975_RS09350 () | 1722248..1722799 | + | 552 | WP_000705622.1 | hypothetical protein | - |
| ECRM9975_RS29125 () | 1722771..1723811 | + | 1041 | WP_000020556.1 | DNA-binding protein | - |
| ECRM9975_RS09355 () | 1723723..1724265 | + | 543 | WP_157825328.1 | replication protein | - |
| ECRM9975_RS09360 () | 1724299..1725033 | + | 735 | WP_000450683.1 | DUF1627 domain-containing protein | - |
| ECRM9975_RS29130 () | 1725030..1725194 | + | 165 | WP_001505071.1 | hypothetical protein | - |
| ECRM9975_RS09370 () | 1725893..1726651 | + | 759 | WP_001449026.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| ECRM9975_RS09380 () | 1726987..1727142 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ECRM9975_RS09385 () | 1727363..1727620 | + | 258 | WP_001217394.1 | hypothetical protein | - |
| ECRM9975_RS09390 () | 1727690..1727968 | + | 279 | WP_032178572.1 | hypothetical protein | - |
| ECRM9975_RS09395 () | 1727970..1729025 | + | 1056 | WP_001265289.1 | DUF968 domain-containing protein | - |
| ECRM9975_RS09400 () | 1729026..1729391 | + | 366 | WP_000140002.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ECRM9975_RS09405 () | 1729388..1730077 | + | 690 | WP_001059384.1 | antiterminator | - |
| ECRM9975_RS09425 () | 1730697..1731125 | + | 429 | Protein_1711 | tellurite resistance TerB family protein | - |
| ECRM9975_RS09430 () | 1731122..1731377 | + | 256 | Protein_1712 | DUF3927 family protein | - |
| ECRM9975_RS09440 () | 1731604..1733370 | + | 1767 | Protein_1713 | DUF1737 domain-containing protein | - |
| ECRM9975_RS09445 () | 1733425..1734638 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| ECRM9975_RS09455 () | 1734728..1734997 | + | 270 | WP_001023452.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM9975_RS09460 () | 1735138..1736013 | + | 876 | WP_000491542.1 | hypothetical protein | VF |
| ECRM9975_RS29135 () | 1736238..1736888 | - | 651 | WP_001121225.1 | type III secretion system effector NleG7 | - |
| ECRM9975_RS09475 () | 1736892..1737158 | - | 267 | Protein_1718 | hypothetical protein | - |
| ECRM9975_RS29425 () | 1737216..1737365 | - | 150 | WP_001345374.1 | hypothetical protein | - |
| ECRM9975_RS09480 () | 1737484..1737726 | - | 243 | WP_012817881.1 | DinI-like family protein | - |
| ECRM9975_RS09485 () | 1737858..1739141 | + | 1284 | Protein_1721 | MHS family MFS transporter YdfJ | - |
| ECRM9975_RS09490 () | 1739230..1740690 | + | 1461 | WP_000527750.1 | mannitol dehydrogenase family protein | - |
| ECRM9975_RS09495 () | 1740726..1740929 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|