MGE detailed information
MGE type: Conjugative plasmid MGE length: 160675 bp
Accession: NZ_CP028382 Location: 1..160675 Organism: Escherichia coli strain RM10466 Replicon: plasmid pRM10466-1
Accession: NZ_CP028382 Location: 1..160675 Organism: Escherichia coli strain RM10466 Replicon: plasmid pRM10466-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7R96_RS26455 () | 103..744 | + | 642 | WP_000335846.1 | transcription termination factor NusG | - |
| C7R96_RS26460 () | 885..1550 | + | 666 | WP_000154144.1 | hypothetical protein | - |
| C7R96_RS26470 () | 1817..2437 | + | 621 | WP_000176499.1 | DUF1449 family protein | - |
| C7R96_RS26475 () | 2464..4158 | + | 1695 | WP_000482662.1 | flotillin family protein | - |
| C7R96_RS26480 () | 4164..4481 | + | 318 | WP_001373093.1 | PilI type IV pilus biogenesis protein | - |
| C7R96_RS26490 () | 5090..6160 | + | 1071 | WP_001170190.1 | hypothetical protein | VF |
| C7R96_RS26495 () | 6165..6602 | + | 438 | WP_000539684.1 | type IV pilus biogenesis protein PilM | - |
| C7R96_RS26500 () | 6633..8252 | + | 1620 | WP_001034996.1 | Outer membrane lipoprotein BfpB | VF |
| C7R96_RS26505 () | 8273..9568 | + | 1296 | WP_000129891.1 | type 4b pilus protein PilO2 | - |
| C7R96_RS26510 () | 9558..10010 | + | 453 | WP_001112923.1 | type IV pilus biogenesis protein PilP | - |
| C7R96_RS26515 () | 10095..11603 | + | 1509 | WP_000886636.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| C7R96_RS26520 () | 11605..12705 | + | 1101 | WP_000670139.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| C7R96_RS26525 () | 12779..13315 | + | 537 | WP_001011156.1 | cleavage protein | - |
| C7R96_RS26530 () | 13369..13842 | + | 474 | WP_000870986.1 | hypothetical protein | VF |
| C7R96_RS26535 () | 13861..14496 | + | 636 | WP_000478595.1 | prepilin peptidase | - |
| C7R96_RS26540 () | 14501..15865 | + | 1365 | WP_001168071.1 | hypothetical protein | VF |
| C7R96_RS26555 () | 16323..16613 | + | 291 | WP_000681897.1 | hypothetical protein | - |
| C7R96_RS26560 () | 16705..17025 | - | 321 | WP_000695056.1 | hypothetical protein | - |
| C7R96_RS26565 () | 17285..18106 | + | 822 | WP_000804094.1 | hypothetical protein | - |
| C7R96_RS26570 () | 18196..19397 | + | 1202 | Protein_19 | conjugal transfer protein TraF | - |
| C7R96_RS26575 () | 19756..20208 | + | 453 | WP_001081198.1 | DotD/TraH family lipoprotein | - |
| C7R96_RS26580 () | 20205..21041 | + | 837 | WP_000848138.1 | hypothetical protein | VF |
| C7R96_RS26585 () | 21025..22173 | + | 1149 | WP_000625247.1 | putative protein YggR | VF |
| C7R96_RS26590 () | 22170..22460 | + | 291 | WP_000817799.1 | hypothetical protein | - |
| C7R96_RS26595 () | 22524..26540 | + | 4017 | WP_033811931.1 | DNA primase | - |
| C7R96_RS26600 () | 26557..26907 | + | 351 | WP_001056369.1 | hypothetical protein | - |
| C7R96_RS26605 () | 26919..27614 | + | 696 | WP_001287263.1 | DotI/IcmL family type IV secretion protein | - |
| C7R96_RS26610 () | 27625..28599 | + | 975 | WP_001165562.1 | hypothetical protein | VF |
| C7R96_RS26615 () | 28603..29934 | + | 1332 | WP_001272010.1 | conjugal transfer protein TraO | - |
| C7R96_RS26620 () | 29931..30644 | + | 714 | WP_000787005.1 | conjugal transfer protein TraP | - |
| C7R96_RS26625 () | 30644..31171 | + | 528 | WP_011310083.1 | conjugal transfer protein TraQ | - |
| C7R96_RS26630 () | 31218..31616 | + | 399 | WP_000086066.1 | hypothetical protein | - |
| C7R96_RS26635 () | 31673..31924 | + | 252 | WP_001277575.1 | hypothetical protein | - |
| C7R96_RS26640 () | 31839..32657 | + | 819 | WP_072094468.1 | conjugal transfer protein TraT | - |
| C7R96_RS26645 () | 32712..33071 | + | 360 | WP_000380399.1 | hypothetical protein | - |
| C7R96_RS26650 () | 33071..33451 | + | 381 | WP_000690886.1 | hypothetical protein | - |
| C7R96_RS26655 () | 33626..36670 | + | 3045 | WP_001024761.1 | hypothetical protein | - |
| C7R96_RS26660 () | 36670..37287 | + | 618 | WP_000286857.1 | hypothetical protein | - |
| C7R96_RS26665 () | 37248..38453 | + | 1206 | WP_001189539.1 | conjugal transfer protein TraW | - |
| C7R96_RS26670 () | 38450..39019 | + | 570 | WP_000650755.1 | conjugal transfer protein TraX | - |
| C7R96_RS26675 () | 39092..41257 | + | 2166 | WP_109996802.1 | DotA/TraY family protein | - |
| C7R96_RS26680 () | 41328..41978 | + | 651 | WP_109996803.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C7R96_RS26685 () | 42252..43838 | + | 1587 | WP_000004566.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| C7R96_RS26690 () | 43976..44128 | - | 153 | WP_001367784.1 | Hok/Gef family protein | - |
| C7R96_RS26695 () | 44462..44704 | + | 243 | WP_001398505.1 | hypothetical protein | - |
| C7R96_RS26700 () | 44797..46332 | - | 1536 | WP_001373098.1 | phosphoethanolamine transferase | - |
| C7R96_RS26705 () | 46533..46988 | - | 456 | WP_001205143.1 | DUF2569 family protein | - |
| C7R96_RS26710 () | 47076..47699 | - | 624 | WP_001158018.1 | hypothetical protein | - |
| C7R96_RS26715 () | 47858..48271 | + | 414 | WP_109996804.1 | thermonuclease family protein | - |
| C7R96_RS26720 () | 48718..52797 | + | 4080 | WP_001034114.1 | Serine protease SepA autotransporter | VF |
| C7R96_RS26730 () | 53304..53669 | + | 366 | WP_000997722.1 | hypothetical protein | - |
| C7R96_RS26735 () | 53679..53870 | + | 192 | WP_000264906.1 | hypothetical protein | - |
| C7R96_RS26740 () | 53898..54209 | + | 312 | WP_000203481.1 | hypothetical protein | - |
| C7R96_RS26755 () | 54992..56263 | + | 1272 | WP_000121915.1 | IncI1-type conjugal transfer protein TrbA | - |
| C7R96_RS26760 () | 56260..57378 | + | 1119 | WP_109996805.1 | DsbC family protein | - |
| C7R96_RS26765 () | 57359..59662 | + | 2304 | WP_000077647.1 | TraM recognition domain-containing protein | - |
| C7R96_RS26770 () | 59788..60090 | + | 303 | WP_000334995.1 | hypothetical protein | - |
| C7R96_RS26775 () | 60188..60619 | - | 432 | WP_001335086.1 | hypothetical protein | - |
| C7R96_RS26780 () | 60687..63398 | - | 2712 | WP_000991390.1 | Protein TraI | Relaxase |
| C7R96_RS26785 () | 63410..63742 | - | 333 | WP_001291058.1 | hypothetical protein | - |
| C7R96_RS26790 () | 63974..64309 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C7R96_RS26795 () | 64394..65242 | - | 849 | WP_001077013.1 | DUF4942 domain-containing protein | - |
| C7R96_RS26810 () | 65821..66072 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| C7R96_RS26815 () | 66103..66336 | - | 234 | WP_001370006.1 | hypothetical protein | - |
| C7R96_RS26820 () | 66336..67262 | - | 927 | WP_000038346.1 | Recombination-promoting nuclease RpnA | VF |
| C7R96_RS26825 () | 67327..67593 | - | 267 | WP_001247860.1 | hypothetical protein | - |
| C7R96_RS26830 () | 67686..68120 | - | 435 | WP_000218848.1 | hypothetical protein | - |
| C7R96_RS26840 () | 68853..69353 | - | 501 | WP_000117617.1 | antirestriction protein ArdA | - |
| C7R96_RS26850 () | 69818..70414 | - | 597 | WP_000978008.1 | hypothetical protein | - |
| C7R96_RS26855 () | 70411..71130 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| C7R96_RS26860 () | 71127..71561 | - | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| C7R96_RS26865 () | 71616..73574 | - | 1959 | WP_000117306.1 | ParB/RepB/Spo0J family partition protein | - |
| C7R96_RS26870 () | 73634..73867 | - | 234 | WP_000006027.1 | DUF905 domain-containing protein | - |
| C7R96_RS26875 () | 73925..74458 | - | 534 | WP_001276132.1 | single-stranded DNA-binding protein | - |
| C7R96_RS26880 () | 74501..75178 | - | 678 | Protein_74 | hypothetical protein | - |
| C7R96_RS26885 () | 75223..75657 | - | 435 | WP_000274419.1 | DUF1380 family protein | - |
| C7R96_RS26890 () | 75671..75892 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| C7R96_RS26895 () | 75893..76576 | - | 684 | WP_000086114.1 | DNA methylase | - |
| C7R96_RS26900 () | 76653..76965 | - | 313 | Protein_78 | hypothetical protein | - |
| C7R96_RS26905 () | 76962..77864 | - | 903 | WP_077629773.1 | DUF1281 domain-containing protein | - |
| C7R96_RS26915 () | 78283..78531 | + | 249 | WP_000618108.1 | DinI-like family protein | - |
| C7R96_RS26920 () | 78528..78965 | + | 438 | WP_000109074.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C7R96_RS26925 () | 78965..80235 | + | 1271 | Protein_82 | translesion error-prone DNA polymerase V subunit UmuC | - |
| C7R96_RS26935 () | 80431..81057 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| C7R96_RS28410 () | 81054..81356 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| C7R96_RS28415 () | 81745..81996 | + | 252 | WP_031322317.1 | hypothetical protein | - |
| C7R96_RS26955 () | 81996..82586 | + | 591 | WP_000194580.1 | hypothetical protein | - |
| C7R96_RS26960 () | 82606..82953 | - | 348 | WP_000142449.1 | hypothetical protein | - |
| C7R96_RS26965 () | 83072..83419 | + | 348 | WP_000762580.1 | hypothetical protein | - |
| C7R96_RS26970 () | 83437..84540 | - | 1104 | WP_109996806.1 | colicin | - |
| C7R96_RS28240 () | 84537..85316 | - | 780 | WP_162543790.1 | colicin-Ia domain protein | - |
| C7R96_RS26985 () | 85595..86260 | - | 666 | WP_000448923.1 | hypothetical protein | - |
| C7R96_RS26990 () | 86283..86492 | - | 210 | Protein_92 | IS21 family transposase IS21 | Transposase |
| C7R96_RS27000 () | 86989..88962 | + | 1974 | WP_024177478.1 | Hemin receptor | VF |
| C7R96_RS27005 () | 88981..89772 | + | 792 | WP_000977390.1 | DUF4198 domain-containing protein | - |
| C7R96_RS27015 () | 90277..90696 | + | 420 | WP_011310111.1 | IS66 family transposase ISEc23 | Transposase |
| C7R96_RS27020 () | 90693..91043 | + | 351 | WP_000624657.1 | IS66 family transposase IS682 | Transposase |
| C7R96_RS27025 () | 91074..92666 | + | 1593 | WP_001370065.1 | IS66 family transposase ISEc47 | Transposase |
| C7R96_RS27030 () | 92696..92869 | + | 174 | Protein_98 | DUF4113 domain-containing protein | - |
| C7R96_RS27035 () | 92871..93287 | - | 417 | WP_001278809.1 | plasmid partitioning/stability family protein | - |
| C7R96_RS27040 () | 93280..94260 | - | 981 | WP_000688508.1 | plasmid segregation protein ParM | - |
| C7R96_RS27045 () | 94675..94983 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| C7R96_RS27050 () | 95070..95714 | - | 645 | WP_001144036.1 | ParA family protein | - |
| C7R96_RS27055 () | 95894..96700 | - | 807 | WP_000016966.1 | site-specific integrase | - |
| C7R96_RS27060 () | 96701..97006 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C7R96_RS27065 () | 97008..97226 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C7R96_RS27070 () | 97822..98082 | + | 261 | WP_000343100.1 | hypothetical protein | - |
| C7R96_RS27075 () | 98079..98669 | + | 591 | WP_000194569.1 | hypothetical protein | - |
| C7R96_RS27080 () | 98687..99034 | - | 348 | WP_000142426.1 | hypothetical protein | - |
| C7R96_RS27090 () | 99504..99839 | - | 336 | Protein_109 | colicin | - |
| C7R96_RS27095 () | 99934..100665 | - | 732 | WP_000850413.1 | complement resistance protein TraT | - |
| C7R96_RS28245 () | 100942..101052 | - | 111 | Protein_111 | IS481 family transposase | - |
| C7R96_RS28420 () | 101056..101267 | - | 212 | Protein_112 | hypothetical protein | - |
| C7R96_RS27115 () | 101836..102813 | + | 978 | WP_001369978.1 | RepB family plasmid replication initiator protein | - |
| C7R96_RS27120 () | 103052..103334 | - | 283 | Protein_114 | ISL3 family transposase ISEc53 | Transposase |
| C7R96_RS27125 () | 103491..103721 | - | 231 | WP_032279745.1 | hypothetical protein | - |
| C7R96_RS27135 () | 103851..104345 | - | 495 | WP_000377257.1 | Transcriptional repressor MprA | VF |
| C7R96_RS27140 () | 104466..105905 | - | 1440 | WP_001213534.1 | Hemolysin secretion protein D, chromosomal | VF |
| C7R96_RS27145 () | 105909..108029 | - | 2121 | WP_072094473.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| C7R96_RS27150 () | 108079..111075 | - | 2997 | WP_000217748.1 | Hemolysin, chromosomal | VF |
| C7R96_RS27155 () | 111077..111592 | - | 516 | WP_001365635.1 | RTX-I toxin-activating lysine-acyltransferase ApxIC | VF |
| C7R96_RS27165 () | 112020..112823 | - | 804 | WP_000899428.1 | Outer membrane protein A | VF |
| C7R96_RS27170 () | 112848..117155 | - | 4308 | WP_024177480.1 | Autotransporter adhesin SadA | VF |
| C7R96_RS27175 () | 117376..117660 | - | 285 | WP_000439678.1 | Major pilu subunit operon regulatory protein PapB | VF |
| C7R96_RS27190 () | 118267..118814 | + | 548 | Protein_124 | transposase | - |
| C7R96_RS27200 () | 119144..119578 | + | 435 | Protein_125 | IS110 family transposase ISEc21 | Transposase |
| C7R96_RS27205 () | 119665..121190 | + | 1526 | Protein_126 | IS3 family transposase | - |
| C7R96_RS27210 () | 121295..121924 | + | 630 | Protein_127 | transposase | - |
| C7R96_RS27215 () | 121944..122292 | + | 349 | Protein_128 | integrase core domain-containing protein | - |
| C7R96_RS27220 () | 122657..124213 | + | 1557 | WP_000554412.1 | L-lactate permease | - |
| C7R96_RS27225 () | 124264..124983 | + | 720 | WP_001102092.1 | (Fe-S)-binding protein | - |
| C7R96_RS27230 () | 124994..126409 | + | 1416 | WP_000054160.1 | iron-sulfur cluster-binding protein | - |
| C7R96_RS27235 () | 126414..127112 | + | 699 | WP_000431492.1 | lactate utilization protein C | - |
| C7R96_RS27240 () | 127153..127389 | - | 237 | WP_001369996.1 | hypothetical protein | - |
| C7R96_RS27245 () | 127457..127921 | - | 465 | WP_077629759.1 | IS3 family transposase ISKpn8 | Transposase |
| C7R96_RS27250 () | 128037..128348 | - | 312 | WP_000203485.1 | hypothetical protein | - |
| C7R96_RS27255 () | 128376..128567 | - | 192 | WP_000264906.1 | hypothetical protein | - |
| C7R96_RS27260 () | 128577..128942 | - | 366 | WP_000997727.1 | hypothetical protein | - |
| C7R96_RS27270 () | 129076..129285 | + | 210 | WP_062896385.1 | hypothetical protein | - |
| C7R96_RS27275 () | 129448..133350 | - | 3903 | WP_047091594.1 | Serine protease EspP | VF |
| C7R96_RS27280 () | 133847..134233 | - | 387 | WP_000598953.1 | thermonuclease family protein | - |
| C7R96_RS27285 () | 134392..135069 | + | 678 | WP_044527425.1 | hypothetical protein | - |
| C7R96_RS27300 () | 135559..135879 | - | 321 | WP_000220092.1 | hypothetical protein | - |
| C7R96_RS27305 () | 135937..137099 | - | 1163 | Protein_143 | IS3 family transposase | - |
| C7R96_RS28255 () | 137166..137255 | - | 90 | Protein_144 | transposase | - |
| C7R96_RS27310 () | 137509..139002 | + | 1494 | WP_077173497.1 | Adhesin YadA | VF |
| C7R96_RS27315 () | 139199..140316 | + | 1118 | Protein_146 | IS3 family transposase | - |
| C7R96_RS27325 () | 140624..142711 | + | 2088 | WP_001223214.1 | bifunctional siderophore receptor/adhesin Iha | - |
| C7R96_RS27330 () | 142972..143394 | - | 423 | WP_001212725.1 | Exc2 family lipoprotein | - |
| C7R96_RS27335 () | 143729..143911 | - | 183 | Protein_149 | IS110 family transposase | - |
| C7R96_RS27340 () | 143973..144161 | + | 189 | Protein_150 | IS66 family transposase IS682 | Transposase |
| C7R96_RS27350 () | 144445..144870 | - | 426 | WP_001373081.1 | subtilase AB5 cytotoxin subunit B | - |
| C7R96_RS27355 () | 144887..145930 | - | 1044 | WP_000912970.1 | subtilase AB5 cytotoxin subunit A | - |
| C7R96_RS27360 () | 145984..146181 | - | 198 | Protein_153 | IS66 family transposase IS682 | Transposase |
| C7R96_RS27365 () | 146219..147811 | - | 1593 | WP_000080208.1 | IS66 family transposase ISEc47 | Transposase |
| C7R96_RS27370 () | 147842..148192 | - | 351 | WP_000624657.1 | IS66 family transposase IS682 | Transposase |
| C7R96_RS27375 () | 148189..148608 | - | 420 | WP_000422688.1 | IS66 family transposase ISEc23 | Transposase |
| C7R96_RS27380 () | 149036..149296 | - | 261 | WP_000038919.1 | hypothetical protein | - |
| C7R96_RS27385 () | 149916..157383 | - | 7468 | Protein_158 | tRNA nuclease CdiA | VF |
| C7R96_RS27390 () | 157836..158075 | - | 240 | WP_011310132.1 | MarR family transcriptional regulator | - |
| C7R96_RS27395 () | 158088..158348 | - | 261 | WP_072094435.1 | hypothetical protein | - |
| C7R96_RS27410 () | 159045..160076 | - | 1032 | WP_000907876.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|