MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 94045 bp
Accession: NZ_CP028319 Location: 1..94045 Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067216 Replicon: plasmid pSC-09-1
Accession: NZ_CP028319 Location: 1..94045 Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067216 Replicon: plasmid pSC-09-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0X15_RS24640 () | 582..1307 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| C0X15_RS24645 () | 1568..2218 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| C0X15_RS24650 () | 2345..2769 | - | 425 | Protein_3 | IS200/IS605 family transposase | - |
| C0X15_RS24655 () | 2826..3176 | + | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| C0X15_RS24660 () | 3243..3803 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| C0X15_RS25390 () | 3959..4246 | + | 288 | WP_071530243.1 | hypothetical protein | - |
| C0X15_RS24665 () | 4523..5008 | - | 486 | WP_000905606.1 | membrane protein | - |
| C0X15_RS24670 () | 5002..5511 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| C0X15_RS24680 () | 5515..6228 | - | 714 | Protein_9 | EAL domain-containing protein | - |
| C0X15_RS24685 () | 6237..7019 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| C0X15_RS24690 () | 7054..7575 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| C0X15_RS24695 () | 7572..7862 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| C0X15_RS24700 () | 7864..8169 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C0X15_RS24705 () | 8171..8389 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C0X15_RS24710 () | 9065..9586 | + | 522 | WP_010999942.1 | hypothetical protein | - |
| C0X15_RS24720 () | 10070..10366 | + | 297 | WP_001687482.1 | hypothetical protein | - |
| C0X15_RS24725 () | 10860..11849 | + | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| C0X15_RS24730 () | 12108..12552 | - | 445 | Protein_18 | site-specific integrase | - |
| C0X15_RS24735 () | 12721..13102 | - | 382 | Protein_19 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C0X15_RS24745 () | 13821..14123 | + | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| C0X15_RS24750 () | 14398..14916 | + | 519 | WP_000748205.1 | major pilin PefA | - |
| C0X15_RS24755 () | 15144..17552 | + | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| C0X15_RS24760 () | 17545..18237 | + | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| C0X15_RS24765 () | 18252..18809 | + | 558 | WP_010999940.1 | membrane protein | - |
| C0X15_RS24770 () | 19062..19937 | + | 876 | WP_014343944.1 | hypothetical protein | - |
| C0X15_RS24775 () | 20369..20581 | + | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| C0X15_RS24780 () | 20566..20916 | + | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| C0X15_RS24785 () | 21161..21814 | + | 654 | WP_000178592.1 | DsbA family protein | - |
| C0X15_RS25395 () | 21804..21950 | + | 147 | WP_001192557.1 | hypothetical protein | - |
| C0X15_RS24790 () | 21947..22846 | + | 900 | WP_010999938.1 | YjiK family protein | - |
| C0X15_RS24795 () | 22936..23493 | + | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| C0X15_RS24800 () | 23760..24518 | + | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| C0X15_RS24805 () | 24615..24836 | - | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| C0X15_RS24815 () | 25696..26577 | - | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| C0X15_RS24820 () | 26558..26635 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| C0X15_RS24825 () | 26885..27151 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| C0X15_RS24835 () | 27330..27771 | - | 442 | Protein_37 | phospholipase | - |
| C0X15_RS24840 () | 27937..28092 | - | 156 | WP_000983042.1 | hypothetical protein | - |
| C0X15_RS24845 () | 28105..28389 | - | 285 | WP_000477658.1 | hypothetical protein | - |
| C0X15_RS24850 () | 28504..29067 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| C0X15_RS24855 () | 29122..29862 | - | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| C0X15_RS24860 () | 29882..35140 | - | 5259 | WP_022743192.1 | conjugative transfer relaxase/helicase TraI | - |
| C0X15_RS24865 () | 35222..35449 | + | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C0X15_RS24870 () | 35449..35847 | + | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C0X15_RS24875 () | 35856..38117 | - | 2262 | WP_022743189.1 | type IV conjugative transfer system coupling protein TraD | - |
| C0X15_RS24880 () | 38494..39225 | - | 732 | WP_022743186.1 | complement resistance protein TraT | - |
| C0X15_RS24885 () | 39261..39755 | - | 495 | WP_010999946.1 | entry exclusion protein | - |
| C0X15_RS24890 () | 39771..42593 | - | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C0X15_RS24895 () | 42590..43972 | - | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| C0X15_RS24900 () | 43962..44510 | - | 549 | WP_022743183.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C0X15_RS24905 () | 44497..44790 | - | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C0X15_RS24910 () | 45004..45753 | - | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C0X15_RS24915 () | 45765..45980 | - | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| C0X15_RS24920 () | 45991..47817 | - | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C0X15_RS24925 () | 47814..48233 | - | 420 | WP_001229397.1 | HNH endonuclease | - |
| C0X15_RS24930 () | 48270..48908 | - | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C0X15_RS24935 () | 48893..49201 | - | 309 | WP_010999945.1 | hypothetical protein | - |
| C0X15_RS24940 () | 49220..50212 | - | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| C0X15_RS24945 () | 50209..50841 | - | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| C0X15_RS24950 () | 50838..51224 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| C0X15_RS24955 () | 51199..53847 | - | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| C0X15_RS24960 () | 53863..54126 | - | 264 | WP_001239256.1 | hypothetical protein | - |
| C0X15_RS24965 () | 54243..54710 | - | 468 | WP_000549562.1 | hypothetical protein | - |
| C0X15_RS24970 () | 54703..54924 | - | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| C0X15_RS24975 () | 55059..55574 | - | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C0X15_RS24980 () | 55571..55816 | - | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| C0X15_RS24985 () | 55794..56390 | - | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| C0X15_RS24990 () | 56380..57801 | - | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| C0X15_RS24995 () | 57801..58541 | - | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| C0X15_RS25000 () | 58528..59094 | - | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| C0X15_RS25005 () | 59116..59427 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| C0X15_RS25010 () | 59442..59804 | - | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| C0X15_RS25015 () | 59846..60073 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| C0X15_RS25020 () | 60168..60854 | - | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| C0X15_RS25025 () | 61047..61427 | - | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| C0X15_RS25035 () | 61842..62312 | + | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| C0X15_RS25400 () | 62623..63441 | - | 819 | Protein_77 | DUF945 domain-containing protein | - |
| C0X15_RS25405 () | 63544..63702 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| C0X15_RS25045 () | 63951..64688 | - | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| C0X15_RS25050 () | 64685..65119 | - | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| C0X15_RS25055 () | 65159..67156 | - | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| C0X15_RS25060 () | 67225..67467 | - | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| C0X15_RS25065 () | 67522..68040 | - | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| C0X15_RS25075 () | 68634..68891 | - | 258 | WP_126834987.1 | hypothetical protein | - |
| C0X15_RS25080 () | 68855..69178 | - | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| C0X15_RS25085 () | 69414..69848 | - | 435 | WP_000274533.1 | DUF1380 family protein | - |
| C0X15_RS25090 () | 69915..70349 | - | 435 | WP_001200150.1 | antirestriction protein | - |
| C0X15_RS25100 () | 70845..71609 | - | 765 | WP_001246548.1 | membrane protein | - |
| C0X15_RS25105 () | 71681..72094 | - | 414 | WP_000990114.1 | DUF1380 family protein | - |
| C0X15_RS25110 () | 72150..72371 | - | 222 | WP_001109588.1 | hypothetical protein | - |
| C0X15_RS25115 () | 72371..73051 | - | 681 | WP_000088645.1 | DNA methylase | - |
| C0X15_RS25125 () | 73433..73789 | - | 357 | WP_000369839.1 | hypothetical protein | - |
| C0X15_RS25130 () | 73782..74252 | - | 471 | WP_000490265.1 | hypothetical protein | - |
| C0X15_RS25135 () | 74763..75185 | + | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C0X15_RS25140 () | 75185..76459 | + | 1275 | WP_022743179.1 | Y-family DNA polymerase | - |
| C0X15_RS25145 () | 76541..77515 | - | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| C0X15_RS25150 () | 77515..78720 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| C0X15_RS25155 () | 79135..80076 | + | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| C0X15_RS25160 () | 80108..80674 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| C0X15_RS25165 () | 80731..81066 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| C0X15_RS25170 () | 81250..81666 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| C0X15_RS25175 () | 81752..82867 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| C0X15_RS25180 () | 83126..83614 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| C0X15_RS25190 () | 84269..85009 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| C0X15_RS25195 () | 85216..85776 | + | 561 | WP_001240331.1 | recombinase family protein | - |
| C0X15_RS25200 () | 85760..87424 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| C0X15_RS25205 () | 87357..88382 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| C0X15_RS25210 () | 88571..89608 | - | 1038 | WP_001121399.1 | IS630 family transposase | - |
| C0X15_RS25215 () | 90217..91110 | + | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| C0X15_RS25220 () | 91284..91448 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| C0X15_RS25225 () | 91622..92389 | + | 768 | WP_001526990.1 | virulence protein SpvA | - |
| C0X15_RS25410 () | 92352..92519 | + | 168 | WP_001526987.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|