MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 86812 bp
Accession: NZ_CP028127 Location: 2273963..2360774 Organism: Xanthomonas vasicola pv. vasculorum strain SAM119 Replicon: chromosome
Accession: NZ_CP028127 Location: 2273963..2360774 Organism: Xanthomonas vasicola pv. vasculorum strain SAM119 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7V42_RS10475 () | 2270434..2271660 | - | 1227 | WP_017116210.1 | MFS transporter | - |
| C7V42_RS10485 () | 2271920..2272030 | - | 111 | WP_010372880.1 | cytochrome bd-I oxidase subunit CydX | - |
| C7V42_RS10490 () | 2272115..2273265 | - | 1151 | Protein_1941 | cytochrome d ubiquinol oxidase subunit II | - |
| C7V42_RS10495 () | 2273282..2274912 | - | 1631 | Protein_1942 | cytochrome ubiquinol oxidase subunit I | - |
| C7V42_RS10500 () | 2275088..2276800 | + | 1713 | WP_010372882.1 | thiol reductant ABC exporter subunit CydD | - |
| C7V42_RS10505 () | 2276797..2278482 | + | 1686 | WP_087910874.1 | thiol reductant ABC exporter subunit CydC | - |
| C7V42_RS10515 () | 2278690..2279304 | - | 615 | WP_010372887.1 | cold shock and DUF1294 domain-containing protein | - |
| C7V42_RS10520 () | 2279454..2280656 | - | 1203 | WP_010372890.1 | homoserine O-acetyltransferase | - |
| C7V42_RS10525 () | 2281043..2282056 | - | 1014 | WP_010372891.1 | tetratricopeptide repeat protein | - |
| C7V42_RS10530 () | 2282056..2282490 | - | 435 | WP_010372894.1 | cytochrome c-type biogenesis protein CcmH | - |
| C7V42_RS10535 () | 2282487..2283089 | - | 603 | WP_010372897.1 | DsbE family thiol:disulfide interchange protein | - |
| C7V42_RS10540 () | 2283082..2285019 | - | 1938 | WP_087910875.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| C7V42_RS10545 () | 2285191..2285661 | - | 471 | WP_010372901.1 | Cytochrome c-type biogenesis protein CcmE | VF |
| C7V42_RS10550 () | 2285658..2285828 | - | 171 | WP_010372903.1 | heme exporter protein CcmD | - |
| C7V42_RS10555 () | 2285825..2286577 | - | 753 | WP_010382232.1 | Heme exporter protein C | VF |
| C7V42_RS10560 () | 2286672..2287367 | - | 696 | WP_017122706.1 | Heme exporter protein B | VF |
| C7V42_RS10565 () | 2287364..2288008 | - | 645 | WP_008573812.1 | Cytochrome c biogenesis ATP-binding export protein CcmA | VF |
| C7V42_RS10570 () | 2288236..2289384 | + | 1149 | WP_017122707.1 | pyridoxal phosphate-dependent aminotransferase | - |
| C7V42_RS10575 () | 2289448..2289761 | + | 314 | Protein_1957 | hypothetical protein | - |
| C7V42_RS10580 () | 2289758..2290570 | + | 813 | WP_010372920.1 | amidohydrolase | - |
| C7V42_RS10585 () | 2290650..2291498 | - | 849 | WP_026112469.1 | glutaminyl-peptide cyclotransferase | - |
| C7V42_RS10590 () | 2291584..2292021 | + | 438 | WP_010372925.1 | hypothetical protein | - |
| C7V42_RS10595 () | 2292229..2293884 | - | 1656 | WP_087910876.1 | pseudouridine synthase | - |
| C7V42_RS10600 () | 2293877..2295079 | - | 1203 | WP_047698046.1 | SMC-Scp complex subunit ScpB | - |
| C7V42_RS10605 () | 2295093..2295998 | - | 906 | WP_017122348.1 | segregation/condensation protein A | - |
| C7V42_RS10610 () | 2296366..2296665 | + | 300 | WP_010372935.1 | YciI family protein | - |
| C7V42_RS10615 () | 2296662..2296931 | + | 270 | WP_017122637.1 | BolA family transcriptional regulator | - |
| C7V42_RS10620 () | 2297552..2298574 | + | 1023 | WP_017115157.1 | LacI family transcriptional regulator | - |
| C7V42_RS10625 () | 2298859..2301837 | + | 2979 | WP_010372945.1 | TonB-dependent receptor | - |
| C7V42_RS10630 () | 2301941..2303560 | + | 1620 | WP_033009877.1 | hypothetical protein | - |
| C7V42_RS10635 () | 2303564..2304934 | + | 1371 | WP_026112471.1 | sugar ABC transporter substrate-binding protein | - |
| C7V42_RS10640 () | 2304931..2305815 | + | 885 | WP_011347672.1 | sugar ABC transporter permease | - |
| C7V42_RS10645 () | 2305812..2306648 | + | 837 | WP_010372959.1 | carbohydrate ABC transporter permease | - |
| C7V42_RS10650 () | 2306675..2309809 | + | 3135 | WP_017118673.1 | discoidin domain-containing protein | - |
| C7V42_RS10655 () | 2309872..2310783 | + | 912 | WP_010372966.1 | endonuclease/exonuclease/phosphatase family protein | - |
| C7V42_RS10660 () | 2310883..2312103 | - | 1221 | WP_026112472.1 | TraB/GumN family protein | - |
| C7V42_RS10665 () | 2312115..2312636 | - | 522 | WP_010382179.1 | GNAT family N-acetyltransferase | - |
| C7V42_RS10670 () | 2312641..2313525 | - | 885 | WP_010372975.1 | carbon-nitrogen hydrolase | - |
| C7V42_RS10680 () | 2313810..2314844 | - | 1035 | WP_162287471.1 | agmatine deiminase family protein | - |
| C7V42_RS10690 () | 2315080..2315421 | - | 342 | WP_010372985.1 | hypothetical protein | - |
| C7V42_RS10695 () | 2315663..2315788 | - | 126 | WP_005913193.1 | type B 50S ribosomal protein L36 | - |
| C7V42_RS10700 () | 2315961..2316644 | + | 684 | WP_010373008.1 | (d)CMP kinase | - |
| C7V42_RS10705 () | 2316828..2318513 | + | 1686 | WP_003489652.1 | 30S ribosomal protein S1 | - |
| C7V42_RS10710 () | 2318602..2318913 | + | 312 | WP_010373014.1 | integration host factor subunit beta | - |
| C7V42_RS10715 () | 2318981..2319286 | + | 306 | WP_010382169.1 | LapA family protein | - |
| C7V42_RS10720 () | 2319293..2320471 | + | 1179 | WP_010373020.1 | lipopolysaccharide assembly protein LapB | - |
| C7V42_RS10725 () | 2320471..2321439 | + | 969 | WP_010373023.1 | glycosyltransferase family 4 protein | - |
| C7V42_RS10730 () | 2321453..2323360 | + | 1908 | WP_010373025.1 | UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase | VF |
| C7V42_RS10735 () | 2323360..2324253 | + | 894 | WP_087910879.1 | UTP--glucose-1-phosphate uridylyltransferase | VF |
| C7V42_RS10745 () | 2325005..2325325 | - | 321 | WP_010382162.1 | DUF1244 domain-containing protein | - |
| C7V42_RS10750 () | 2325375..2326268 | + | 894 | WP_010373037.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| C7V42_RS10755 () | 2326475..2327932 | + | 1458 | WP_010373039.1 | IMP dehydrogenase | - |
| C7V42_RS10760 () | 2328054..2329619 | + | 1566 | WP_010373041.1 | glutamine-hydrolyzing GMP synthase | - |
| C7V42_RS10765 () | 2329928..2331136 | + | 1209 | WP_010373043.1 | Prophage integrase IntA ; Integrase | Integrase |
| C7V42_RS10770 () | 2331422..2331652 | + | 231 | WP_010370213.1 | AlpA family phage regulatory protein | - |
| C7V42_RS10775 () | 2331656..2332522 | + | 867 | WP_017123059.1 | helicase RepA family protein | - |
| C7V42_RS10780 () | 2332509..2333408 | + | 900 | WP_010370218.1 | replication protein C | - |
| C7V42_RS10790 () | 2335003..2335323 | - | 321 | WP_010370221.1 | hypothetical protein | - |
| C7V42_RS10795 () | 2335329..2336909 | - | 1581 | WP_010370224.1 | P-type conjugative transfer protein TrbL | - |
| C7V42_RS10800 () | 2336912..2337100 | - | 189 | WP_010370227.1 | hypothetical protein | - |
| C7V42_RS10805 () | 2337103..2337897 | - | 795 | WP_026112613.1 | P-type conjugative transfer protein TrbJ | - |
| C7V42_RS10815 () | 2338389..2338604 | - | 216 | WP_010370235.1 | hypothetical protein | - |
| C7V42_RS10820 () | 2339162..2339524 | + | 363 | WP_087910995.1 | CopG family transcriptional regulator | - |
| C7V42_RS10825 () | 2339626..2340621 | + | 996 | WP_087910994.1 | DUF4935 domain-containing protein | - |
| C7V42_RS10830 () | 2341077..2341523 | + | 447 | WP_017115703.1 | hypothetical protein | - |
| C7V42_RS10835 () | 2341588..2341779 | + | 192 | WP_010373115.1 | hypothetical protein | - |
| C7V42_RS10840 () | 2342035..2343009 | - | 975 | WP_199285780.1 | DUF2326 domain-containing protein | - |
| C7V42_RS10850 () | 2343209..2343463 | + | 255 | WP_010373123.1 | plasmid stabilization protein | Antitoxin Detail |
| C7V42_RS10855 () | 2343464..2343883 | + | 420 | WP_010373126.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C7V42_RS10860 () | 2344053..2344838 | + | 786 | WP_087910997.1 | P-type conjugative transfer protein TrbJ | - |
| C7V42_RS10865 () | 2344854..2345129 | + | 276 | WP_017115702.1 | entry exclusion lipoprotein TrbK | - |
| C7V42_RS10870 () | 2345126..2346760 | + | 1635 | WP_010373135.1 | P-type conjugative transfer protein TrbL | - |
| C7V42_RS10875 () | 2346827..2347054 | + | 228 | WP_010373138.1 | type I toxin-antitoxin system ptaRNA1 family toxin | - |
| C7V42_RS10880 () | 2347294..2347653 | - | 360 | WP_010373141.1 | hypothetical protein | - |
| C7V42_RS10885 () | 2347828..2348409 | + | 582 | WP_017122811.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| C7V42_RS10890 () | 2348614..2351289 | + | 2676 | WP_087910993.1 | histidinol-phosphatase | - |
| C7V42_RS10895 () | 2351271..2352446 | + | 1176 | WP_010373152.1 | putative DNA binding domain-containing protein | - |
| C7V42_RS10900 () | 2352508..2352705 | + | 198 | WP_010373154.1 | hypothetical protein | - |
| C7V42_RS10905 () | 2352953..2355391 | - | 2439 | WP_026112473.1 | DUF2309 domain-containing protein | - |
| C7V42_RS10910 () | 2355415..2356986 | - | 1572 | WP_017113197.1 | oxidoreductase | - |
| C7V42_RS10915 () | 2357096..2357986 | + | 891 | WP_017121893.1 | Transcriptional activator protein NhaR | VF |
| C7V42_RS10920 () | 2358024..2358935 | - | 912 | WP_087910992.1 | HTH-type transcriptional regulator PgrR | VF |
| C7V42_RS10925 () | 2359037..2359354 | + | 318 | WP_010373167.1 | nuclear transport factor 2 family protein | - |
| C7V42_RS10930 () | 2359351..2360133 | + | 783 | WP_017113196.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| C7V42_RS10935 () | 2360153..2361271 | - | 1119 | WP_010373173.1 | YeiH family protein | - |
| C7V42_RS10940 () | 2361386..2362309 | + | 924 | WP_010378912.1 | LysR family transcriptional regulator | - |
| C7V42_RS10945 () | 2362517..2363131 | - | 615 | WP_017118679.1 | hypothetical protein | - |
| C7V42_RS10950 () | 2363174..2364328 | - | 1155 | WP_026112474.1 | Cache 3/Cache 2 fusion domain-containing protein | - |
| C7V42_RS10955 () | 2364682..2365323 | - | 642 | WP_017115699.1 | response regulator transcription factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|