MGE detailed information
MGE type: Conjugative plasmid MGE length: 86617 bp
Accession: NZ_CP028120 Location: 1..86617 Organism: Escherichia coli O43 str. RM10042 Replicon: plasmid pRM10042-1
Accession: NZ_CP028120 Location: 1..86617 Organism: Escherichia coli O43 str. RM10042 Replicon: plasmid pRM10042-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3W_RS00010 () | 570..1021 | + | 452 | Protein_1 | type IV pilus biogenesis protein PilP | - |
| I3W_RS00015 () | 1106..2614 | + | 1509 | WP_000886636.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| I3W_RS00020 () | 2616..3716 | + | 1101 | WP_108942157.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| I3W_RS00025 () | 3790..4326 | + | 537 | WP_001011156.1 | cleavage protein | - |
| I3W_RS00030 () | 4380..4853 | + | 474 | WP_000870986.1 | hypothetical protein | VF |
| I3W_RS00035 () | 4872..5507 | + | 636 | WP_108942159.1 | prepilin peptidase | - |
| I3W_RS00040 () | 5512..6876 | + | 1365 | WP_001168072.1 | hypothetical protein | VF |
| I3W_RS00050 () | 7114..7296 | - | 183 | WP_108942161.1 | hypothetical protein | - |
| I3W_RS00055 () | 7435..8625 | - | 1191 | WP_108942163.1 | site-specific integrase | - |
| I3W_RS00060 () | 8791..9110 | - | 320 | Protein_10 | hypothetical protein | - |
| I3W_RS00065 () | 9370..10191 | + | 822 | WP_032326948.1 | hypothetical protein | - |
| I3W_RS00070 () | 10281..11483 | + | 1203 | WP_001597010.1 | conjugal transfer protein TraF | - |
| I3W_RS00075 () | 11842..12294 | + | 453 | WP_001081198.1 | DotD/TraH family lipoprotein | - |
| I3W_RS00080 () | 12291..13127 | + | 837 | WP_000848138.1 | hypothetical protein | VF |
| I3W_RS00085 () | 13111..14259 | + | 1149 | WP_000625247.1 | putative protein YggR | VF |
| I3W_RS00090 () | 14256..14546 | + | 291 | WP_000817799.1 | hypothetical protein | - |
| I3W_RS00095 () | 14610..18641 | + | 4032 | WP_108942165.1 | DNA primase | - |
| I3W_RS00100 () | 18658..19008 | + | 351 | WP_001056369.1 | hypothetical protein | - |
| I3W_RS00105 () | 19020..19715 | + | 696 | WP_001287263.1 | DotI/IcmL family type IV secretion protein | - |
| I3W_RS00110 () | 19726..20700 | + | 975 | WP_108942167.1 | hypothetical protein | VF |
| I3W_RS00115 () | 20704..22035 | + | 1332 | WP_009453278.1 | conjugal transfer protein TraO | - |
| I3W_RS00120 () | 22032..22745 | + | 714 | WP_000787009.1 | conjugal transfer protein TraP | - |
| I3W_RS00125 () | 22745..23272 | + | 528 | WP_001379391.1 | conjugal transfer protein TraQ | - |
| I3W_RS00130 () | 23319..23717 | + | 399 | WP_000086067.1 | hypothetical protein | - |
| I3W_RS00135 () | 23774..24025 | + | 252 | WP_001277575.1 | hypothetical protein | - |
| I3W_RS00140 () | 23940..24758 | + | 819 | WP_072148066.1 | conjugal transfer protein TraT | - |
| I3W_RS27545 () | 24815..25174 | + | 360 | WP_162617003.1 | hypothetical protein | - |
| I3W_RS00150 () | 25174..25554 | + | 381 | WP_000690886.1 | hypothetical protein | - |
| I3W_RS00155 () | 25730..28774 | + | 3045 | WP_001024761.1 | hypothetical protein | - |
| I3W_RS00160 () | 28774..29391 | + | 618 | WP_000286857.1 | hypothetical protein | - |
| I3W_RS00165 () | 29352..30557 | + | 1206 | WP_001189539.1 | conjugal transfer protein TraW | - |
| I3W_RS00170 () | 30554..31123 | + | 570 | WP_000650755.1 | conjugal transfer protein TraX | - |
| I3W_RS00175 () | 31196..33361 | + | 2166 | WP_053294020.1 | DotA/TraY family protein | - |
| I3W_RS00180 () | 33448..34092 | + | 645 | WP_053294019.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| I3W_RS00185 () | 34249..34410 | + | 162 | WP_108942171.1 | antitoxin | - |
| I3W_RS00190 () | 34407..34559 | - | 153 | WP_001367784.1 | Hok/Gef family protein | - |
| I3W_RS00195 () | 34892..35134 | + | 243 | WP_001398505.1 | hypothetical protein | - |
| I3W_RS00200 () | 35227..36762 | - | 1536 | WP_001563235.1 | phosphoethanolamine transferase | - |
| I3W_RS00205 () | 36963..37418 | - | 456 | WP_108942173.1 | DUF2569 family protein | - |
| I3W_RS00210 () | 37506..38129 | - | 624 | WP_001158019.1 | hypothetical protein | - |
| I3W_RS00215 () | 38275..38760 | + | 486 | WP_053294015.1 | thermonuclease family protein | - |
| I3W_RS00230 () | 39404..39769 | + | 366 | WP_053294029.1 | hypothetical protein | - |
| I3W_RS00235 () | 39779..39970 | + | 192 | WP_000264909.1 | hypothetical protein | - |
| I3W_RS00240 () | 40004..40327 | + | 324 | WP_053294014.1 | hypothetical protein | - |
| I3W_RS00255 () | 41110..42372 | + | 1263 | WP_081521050.1 | IncI1-type conjugal transfer protein TrbA | - |
| I3W_RS00260 () | 42369..43484 | + | 1116 | WP_108942178.1 | thioredoxin fold domain-containing protein | - |
| I3W_RS00265 () | 43465..45594 | + | 2130 | Protein_47 | TraM recognition domain-containing protein | - |
| I3W_RS00270 () | 46128..46472 | - | 345 | WP_032354044.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| I3W_RS00275 () | 46472..46720 | - | 249 | WP_053294011.1 | transcriptional regulator | - |
| I3W_RS00280 () | 46789..49491 | - | 2703 | WP_108942180.1 | Protein TraI | Relaxase |
| I3W_RS00285 () | 49503..49835 | - | 333 | WP_001291058.1 | hypothetical protein | - |
| I3W_RS00290 () | 50067..50402 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| I3W_RS00295 () | 50487..51335 | - | 849 | WP_108942182.1 | DUF4942 domain-containing protein | - |
| I3W_RS00310 () | 51915..52166 | + | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| I3W_RS00315 () | 52197..52391 | - | 195 | WP_000150324.1 | ISNCY family transposase ISPlu22 | Transposase |
| I3W_RS00320 () | 52453..53331 | - | 879 | WP_108942184.1 | Recombination-promoting nuclease RpnA | VF |
| I3W_RS00325 () | 53328..53717 | - | 390 | WP_001317525.1 | hypothetical protein | - |
| I3W_RS00330 () | 53908..54174 | - | 267 | WP_108942186.1 | hypothetical protein | - |
| I3W_RS00335 () | 54267..54701 | - | 435 | WP_000218847.1 | hypothetical protein | - |
| I3W_RS00345 () | 55433..55933 | - | 501 | WP_000117616.1 | antirestriction protein ArdA | - |
| I3W_RS00355 () | 56398..56994 | - | 597 | WP_000978008.1 | hypothetical protein | - |
| I3W_RS00360 () | 56991..57710 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| I3W_RS00365 () | 57707..58141 | - | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| I3W_RS00370 () | 58196..60154 | - | 1959 | WP_000117306.1 | ParB/RepB/Spo0J family partition protein | - |
| I3W_RS00375 () | 60214..60447 | - | 234 | WP_000006027.1 | DUF905 domain-containing protein | - |
| I3W_RS00380 () | 60505..61038 | - | 534 | WP_001276132.1 | single-stranded DNA-binding protein | - |
| I3W_RS27550 () | 61475..61828 | - | 354 | WP_001367791.1 | hypothetical protein | - |
| I3W_RS00390 () | 61791..61982 | - | 192 | WP_001027514.1 | hypothetical protein | - |
| I3W_RS00395 () | 61982..62401 | - | 420 | WP_000271736.1 | DUF1380 family protein | - |
| I3W_RS00400 () | 62448..62750 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| I3W_RS00415 () | 63288..64058 | - | 771 | WP_108942188.1 | hypothetical protein | - |
| I3W_RS00420 () | 64103..64537 | - | 435 | WP_062881170.1 | DUF1380 family protein | - |
| I3W_RS00425 () | 64551..64772 | - | 222 | WP_001104895.1 | hypothetical protein | - |
| I3W_RS00430 () | 64773..65456 | - | 684 | WP_000086114.1 | DNA methylase | - |
| I3W_RS00435 () | 65532..65843 | - | 312 | WP_032142517.1 | hypothetical protein | - |
| I3W_RS00440 () | 65840..66742 | - | 903 | WP_108942196.1 | DUF1281 domain-containing protein | - |
| I3W_RS27555 () | 66819..67088 | + | 270 | WP_162617005.1 | hypothetical protein | - |
| I3W_RS00445 () | 67365..68327 | + | 963 | WP_000959879.1 | plasmid segregation protein ParM | - |
| I3W_RS00450 () | 68330..68680 | + | 351 | WP_032274991.1 | plasmid partitioning/stability family protein | - |
| I3W_RS00455 () | 69032..69814 | - | 783 | WP_032082922.1 | site-specific integrase | - |
| I3W_RS00460 () | 69816..70229 | - | 414 | WP_023210874.1 | hypothetical protein | - |
| I3W_RS00465 () | 70797..71057 | + | 261 | WP_019842588.1 | hypothetical protein | - |
| I3W_RS00470 () | 71054..71644 | + | 591 | WP_023166813.1 | hypothetical protein | - |
| I3W_RS00480 () | 72247..72840 | + | 594 | WP_080193736.1 | proQ/FINO family protein | - |
| I3W_RS00485 () | 73122..73709 | - | 588 | WP_032274974.1 | serine acetyltransferase | - |
| I3W_RS00490 () | 74009..74350 | + | 342 | WP_000578011.1 | hypothetical protein | - |
| I3W_RS00495 () | 74546..74827 | - | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| I3W_RS00500 () | 74824..75093 | - | 270 | WP_000079931.1 | hypothetical protein | Antitoxin Detail |
| I3W_RS00515 () | 76002..77033 | - | 1032 | WP_108942190.1 | replication initiation protein | - |
| I3W_RS00530 () | 77734..78375 | + | 642 | WP_000335846.1 | transcription termination factor NusG | - |
| I3W_RS00535 () | 78516..79181 | + | 666 | WP_100033550.1 | traC | - |
| I3W_RS00545 () | 79448..80068 | + | 621 | WP_000176499.1 | DUF1449 family protein | - |
| I3W_RS00550 () | 80095..81789 | + | 1695 | WP_108942192.1 | flotillin family protein | - |
| I3W_RS00555 () | 81795..82112 | + | 318 | WP_001373093.1 | PilI type IV pilus biogenesis protein | - |
| I3W_RS00565 () | 82720..83790 | + | 1071 | WP_108942194.1 | hypothetical protein | VF |
| I3W_RS00570 () | 83795..84232 | + | 438 | WP_000539684.1 | type IV pilus biogenesis protein PilM | - |
| I3W_RS00575 () | 84263..85881 | + | 1619 | Protein_97 | Outer membrane lipoprotein BfpB | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|