MGE detailed information
MGE type: Prophage MGE length: 50384 bp
Accession: NZ_CP028110 Location: 1650635..1701018 Organism: Escherichia coli O121 str. RM8352 Replicon: chromosome
Accession: NZ_CP028110 Location: 1650635..1701018 Organism: Escherichia coli O121 str. RM8352 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I3S_RS29800 () | 1646624..1646671 | + | 48 | WP_211180494.1 | protein YnaN | - |
| I3S_RS08870 () | 1646685..1647668 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| I3S_RS08875 () | 1647943..1648116 | + | 174 | WP_001296046.1 | hypothetical protein | - |
| I3S_RS08880 () | 1648146..1649519 | + | 1374 | WP_000123758.1 | ATP-dependent RNA helicase DbpA | - |
| I3S_RS08885 () | 1649648..1650583 | - | 936 | WP_001157421.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| I3S_RS08890 () | 1650635..1651813 | - | 1179 | WP_001351710.1 | Putative defective protein IntQ ; Integrase | Integrase |
| I3S_RS08900 () | 1653185..1653400 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| I3S_RS08905 () | 1653479..1653688 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1653504..1653682 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1653504..1653682 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1653504..1653682 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1653504..1653682 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| I3S_RS08910 () | 1653681..1653875 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| I3S_RS08915 () | 1653932..1654741 | - | 810 | WP_000595429.1 | recombination protein RecT | - |
| I3S_RS08920 () | 1654734..1657403 | - | 2670 | WP_000102191.1 | exodeoxyribonuclease VIII | - |
| I3S_RS08925 () | 1657484..1657660 | - | 177 | WP_000245534.1 | hypothetical protein | - |
| I3S_RS08930 () | 1657654..1657875 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| I3S_RS08935 () | 1658300..1658452 | - | 153 | WP_001169149.1 | DUF1391 family protein | - |
| I3S_RS08945 () | 1658833..1659297 | - | 465 | WP_001253182.1 | helix-turn-helix domain-containing protein | - |
| I3S_RS08950 () | 1659402..1659677 | + | 276 | WP_000171139.1 | helix-turn-helix domain-containing protein | - |
| I3S_RS08955 () | 1659661..1660083 | + | 423 | WP_000702023.1 | hypothetical protein | - |
| I3S_RS08960 () | 1660096..1660953 | + | 858 | WP_000899743.1 | DUF1376 domain-containing protein | - |
| I3S_RS08965 () | 1660960..1661706 | + | 747 | WP_000788989.1 | ATP-binding protein | - |
| I3S_RS08970 () | 1661728..1662489 | + | 762 | WP_001370676.1 | DUF1627 domain-containing protein | - |
| I3S_RS08975 () | 1662505..1662921 | + | 417 | WP_001151266.1 | DUF977 family protein | - |
| I3S_RS08980 () | 1662918..1663391 | + | 474 | WP_001275735.1 | class I SAM-dependent methyltransferase | - |
| I3S_RS08985 () | 1663714..1664292 | + | 579 | WP_001204666.1 | sce7726 family protein | - |
| I3S_RS08990 () | 1664252..1665349 | - | 1098 | WP_000156213.1 | beta family protein | - |
| I3S_RS09000 () | 1667168..1667323 | + | 156 | WP_000813257.1 | type I toxin-antitoxin system toxin HokD | - |
| I3S_RS09005 () | 1667535..1667714 | + | 180 | WP_000119356.1 | hypothetical protein | - |
| I3S_RS09010 () | 1667733..1668218 | + | 486 | WP_000818166.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| I3S_RS29600 () | 1668447..1668620 | + | 174 | WP_000687447.1 | hypothetical protein | - |
| I3S_RS09015 () | 1668680..1669279 | + | 600 | WP_000940340.1 | DUF1367 family protein | - |
| I3S_RS09020 () | 1669279..1669569 | + | 291 | WP_000228018.1 | DUF1364 domain-containing protein | - |
| I3S_RS09025 () | 1669566..1670120 | + | 555 | WP_000640170.1 | DUF1133 family protein | - |
| I3S_RS09035 () | 1670391..1670948 | + | 558 | Protein_1647 | ORF6N domain-containing protein | - |
| I3S_RS09050 () | 1671662..1673608 | + | 1947 | WP_106875738.1 | DUF1737 domain-containing protein | - |
| I3S_RS09055 () | 1673745..1673924 | + | 180 | WP_000142777.1 | DUF1378 family protein | - |
| I3S_RS09060 () | 1673965..1674210 | + | 246 | WP_001290233.1 | DUF826 domain-containing protein | - |
| I3S_RS09065 () | 1674287..1674502 | + | 216 | WP_000284506.1 | class II holin family protein | - |
| I3S_RS09070 () | 1674507..1675040 | + | 534 | WP_000087730.1 | lysozyme | - |
| I3S_RS09075 () | 1675311..1675880 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| I3S_RS29275 () | 1675880..1676026 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| I3S_RS29285 () | 1676254..1676439 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| I3S_RS09090 () | 1676955..1677431 | + | 477 | WP_000348566.1 | DUF1441 family protein | - |
| I3S_RS09095 () | 1677428..1679551 | + | 2124 | WP_001077633.1 | phage terminase large subunit family protein | - |
| I3S_RS09100 () | 1679548..1679760 | + | 213 | WP_000102415.1 | hypothetical protein | - |
| I3S_RS09105 () | 1679760..1681262 | + | 1503 | WP_109024229.1 | phage portal protein | - |
| I3S_RS09110 () | 1681207..1683231 | + | 2025 | WP_001114424.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| I3S_RS09115 () | 1683319..1683653 | + | 335 | Protein_1661 | DUF2190 family protein | - |
| I3S_RS09120 () | 1683646..1683927 | + | 282 | WP_001281345.1 | DNA breaking-rejoining protein | - |
| I3S_RS09125 () | 1683930..1684553 | + | 624 | WP_044862705.1 | phage tail protein | - |
| I3S_RS09130 () | 1684566..1684964 | + | 399 | WP_000682719.1 | tail protein | - |
| I3S_RS09135 () | 1684972..1685724 | + | 753 | WP_000235098.1 | Ig domain-containing protein | - |
| I3S_RS09140 () | 1685738..1686160 | + | 423 | WP_000479045.1 | phage minor tail protein G | - |
| I3S_RS09145 () | 1686187..1686600 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| I3S_RS09150 () | 1686581..1689193 | + | 2613 | WP_032212771.1 | phage tail tape measure protein | - |
| I3S_RS09155 () | 1689190..1689519 | + | 330 | WP_000847401.1 | phage tail protein | - |
| I3S_RS09160 () | 1689519..1690217 | + | 699 | WP_001299882.1 | phage minor tail protein L | - |
| I3S_RS09165 () | 1690223..1690966 | + | 744 | WP_001370115.1 | C40 family peptidase | - |
| I3S_RS09170 () | 1690912..1691547 | + | 636 | WP_077696211.1 | tail assembly protein | - |
| I3S_RS09175 () | 1691783..1695259 | + | 3477 | WP_109024230.1 | host specificity protein J | - |
| I3S_RS09180 () | 1695326..1695925 | + | 600 | WP_001230496.1 | Outer membrane protein X | VF |
| I3S_RS09185 () | 1695990..1697303 | + | 1314 | WP_032212694.1 | ISNCY family transposase KIS | Transposase |
| I3S_RS09190 () | 1697305..1697574 | + | 270 | WP_001023386.1 | phage tail fiber C-terminal domain-containing protein | - |
| I3S_RS09200 () | 1697977..1698990 | + | 1014 | WP_122993102.1 | hypothetical protein | VF |
| I3S_RS09210 () | 1699361..1699603 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| I3S_RS09215 () | 1699735..1701018 | + | 1284 | Protein_1679 | MHS family MFS transporter YdfJ | - |
| I3S_RS09220 () | 1701107..1702568 | + | 1462 | Protein_1680 | mannitol dehydrogenase family protein | - |
| I3S_RS09225 () | 1702604..1702807 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| I3S_RS09230 () | 1702985..1703671 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| I3S_RS09235 () | 1703760..1704506 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|