MGE detailed information
MGE type: Prophage MGE length: 40008 bp
Accession: NZ_CP027735 Location: 6412431..6452438 Organism: Pseudomonas chlororaphis subsp. piscium strain DTR133 Replicon: chromosome
Accession: NZ_CP027735 Location: 6412431..6452438 Organism: Pseudomonas chlororaphis subsp. piscium strain DTR133 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K34_RS28695 () | 6407660..6408889 | + | 1230 | WP_063433206.1 | multifunctional CCA addition/repair protein | - |
| C4K34_RS28700 () | 6408972..6409490 | - | 519 | WP_063433207.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| C4K34_RS28705 () | 6409481..6409834 | - | 354 | WP_007926118.1 | dihydroneopterin aldolase | - |
| C4K34_RS28710 () | 6409909..6410478 | + | 570 | WP_009051169.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| C4K34_RS28715 () | 6410520..6411545 | - | 1026 | WP_009045890.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| C4K34_RS28720 () | 6411746..6411961 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| C4K34_RS28725 () | 6412431..6414395 | + | 1965 | WP_063433208.1 | DNA primase | - |
| C4K34_RS28730 () | 6414463..6416310 | + | 1848 | WP_007926106.1 | RNA polymerase sigma factor RpoD | - |
| C4K34_RS28735 () | 6416434..6420177 | + | 3744 | WP_063433209.1 | putative signaling protein | VF |
| C4K34_RS28745 () | 6420376..6421935 | - | 1560 | WP_206429704.1 | hypothetical protein | - |
| C4K34_RS28750 () | 6421947..6422972 | - | 1026 | WP_124372847.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C4K34_RS28755 () | 6422975..6423211 | - | 237 | WP_038582864.1 | helix-turn-helix transcriptional regulator | - |
| C4K34_RS28760 () | 6423304..6423540 | + | 237 | WP_041984708.1 | hypothetical protein | - |
| C4K34_RS28765 () | 6423550..6426231 | + | 2682 | WP_124372889.1 | toprim domain-containing protein | - |
| C4K34_RS28770 () | 6426700..6426993 | + | 294 | WP_124372848.1 | hypothetical protein | - |
| C4K34_RS28775 () | 6427004..6427255 | + | 252 | WP_124372849.1 | hypothetical protein | - |
| C4K34_RS28780 () | 6427318..6427611 | + | 294 | WP_124372850.1 | hypothetical protein | - |
| C4K34_RS28785 () | 6427604..6427843 | + | 240 | WP_124372851.1 | Arc family DNA-binding protein | - |
| C4K34_RS28790 () | 6427837..6428085 | + | 249 | WP_124372852.1 | hypothetical protein | - |
| C4K34_RS28795 () | 6428885..6429148 | - | 264 | WP_124372853.1 | ogr/Delta-like zinc finger family protein | - |
| C4K34_RS28800 () | 6429230..6430096 | - | 867 | WP_124372890.1 | phage portal protein | - |
| C4K34_RS28805 () | 6430008..6432059 | - | 2052 | WP_124348781.1 | terminase family protein | - |
| C4K34_RS28810 () | 6432223..6433146 | + | 924 | WP_124372854.1 | GPO family capsid scaffolding protein | - |
| C4K34_RS28815 () | 6433148..6434167 | + | 1020 | WP_124372855.1 | phage major capsid protein, P2 family | - |
| C4K34_RS28820 () | 6434164..6434886 | + | 723 | WP_124372856.1 | terminase | - |
| C4K34_RS28825 () | 6434984..6435445 | + | 462 | WP_124372891.1 | head completion/stabilization protein | - |
| C4K34_RS28830 () | 6435442..6435897 | + | 456 | WP_124372857.1 | phage tail protein | - |
| C4K34_RS28835 () | 6435887..6436567 | + | 681 | WP_124372858.1 | phage virion morphogenesis protein | - |
| C4K34_RS28840 () | 6436579..6437694 | + | 1116 | WP_124372859.1 | DUF2586 family protein | - |
| C4K34_RS28845 () | 6437700..6438149 | + | 450 | WP_092304121.1 | DUF2597 family protein | - |
| C4K34_RS28850 () | 6438149..6438361 | + | 213 | WP_124372860.1 | TraR/DksA C4-type zinc finger protein | - |
| C4K34_RS28855 () | 6438457..6438711 | + | 255 | WP_041984753.1 | hypothetical protein | - |
| C4K34_RS28860 () | 6438708..6439241 | + | 534 | WP_124372861.1 | lysozyme | - |
| C4K34_RS28865 () | 6439238..6439732 | + | 495 | WP_124372862.1 | lysis system i-spanin subunit Rz | - |
| C4K34_RS28870 () | 6439770..6440057 | + | 288 | WP_124372863.1 | hypothetical protein | - |
| C4K34_RS28875 () | 6440230..6442590 | + | 2361 | WP_124372864.1 | phage tail tape measure protein | - |
| C4K34_RS28880 () | 6442590..6442907 | + | 318 | WP_124348794.1 | DUF2590 family protein | - |
| C4K34_RS28885 () | 6442904..6444076 | + | 1173 | WP_124372865.1 | baseplate J/gp47 family protein | - |
| C4K34_RS28890 () | 6444073..6444597 | + | 525 | WP_124372866.1 | phage tail protein | - |
| C4K34_RS28895 () | 6444607..6447105 | + | 2499 | WP_124372867.1 | phage tail protein | - |
| C4K34_RS28900 () | 6447114..6447824 | + | 711 | WP_124372868.1 | hypothetical protein | - |
| C4K34_RS28905 () | 6447821..6448744 | + | 924 | WP_124372892.1 | hypothetical protein | - |
| C4K34_RS28910 () | 6448741..6449289 | + | 549 | WP_096375630.1 | DNA-binding protein | - |
| C4K34_RS28915 () | 6449286..6449990 | + | 705 | WP_124372869.1 | hypothetical protein | - |
| C4K34_RS28920 () | 6449963..6450934 | + | 972 | WP_124372870.1 | hypothetical protein | - |
| C4K34_RS28925 () | 6450931..6451572 | - | 642 | WP_124372871.1 | hypothetical protein | - |
| C4K34_RS28930 () | 6451798..6451980 | + | 183 | WP_028681531.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C4K34_RS28935 () | 6452013..6452438 | + | 426 | WP_041984783.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C4K34_RS28940 () | 6452984..6453175 | + | 192 | WP_124372872.1 | hypothetical protein | - |
| C4K34_RS28945 () | 6453608..6454411 | + | 804 | WP_063433210.1 | hypothetical protein | - |
| C4K34_RS28950 () | 6454499..6456865 | - | 2367 | WP_063433211.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|