MGE detailed information
MGE type: Prophage MGE length: 40153 bp
Accession: NZ_CP027720 Location: 6392412..6432564 Organism: Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698 Replicon: chromosome
Accession: NZ_CP027720 Location: 6392412..6432564 Organism: Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K13_RS29145 () | 6387641..6388870 | + | 1230 | WP_009051166.1 | multifunctional CCA addition/repair protein | - |
| C4K13_RS29150 () | 6388953..6389471 | - | 519 | WP_009051167.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| C4K13_RS29155 () | 6389462..6389815 | - | 354 | WP_007926118.1 | dihydroneopterin aldolase | - |
| C4K13_RS29160 () | 6389890..6390459 | + | 570 | WP_009051169.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| C4K13_RS29165 () | 6390501..6391526 | - | 1026 | WP_009045890.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| C4K13_RS29170 () | 6391727..6391942 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| C4K13_RS29175 () | 6392412..6394376 | + | 1965 | WP_041984697.1 | DNA primase | - |
| C4K13_RS29180 () | 6394444..6396291 | + | 1848 | WP_007926106.1 | RNA polymerase sigma factor RpoD | - |
| C4K13_RS29185 () | 6396414..6400157 | + | 3744 | WP_009051172.1 | putative signaling protein | VF |
| C4K13_RS29195 () | 6400298..6401362 | - | 1065 | WP_041984703.1 | IS91 family transposase ISTha3 | Transposase |
| C4K13_RS29200 () | 6401365..6401601 | - | 237 | WP_041984705.1 | helix-turn-helix transcriptional regulator | - |
| C4K13_RS29205 () | 6401694..6401930 | + | 237 | WP_041984708.1 | hypothetical protein | - |
| C4K13_RS29210 () | 6401940..6404621 | + | 2682 | WP_041985158.1 | toprim domain-containing protein | - |
| C4K13_RS29215 () | 6405090..6405383 | + | 294 | WP_124355756.1 | hypothetical protein | - |
| C4K13_RS29220 () | 6405394..6405645 | + | 252 | WP_041984712.1 | hypothetical protein | - |
| C4K13_RS29225 () | 6405708..6405998 | + | 291 | WP_041985161.1 | hypothetical protein | - |
| C4K13_RS29230 () | 6405991..6406230 | + | 240 | WP_041984715.1 | Arc family DNA-binding protein | - |
| C4K13_RS29235 () | 6406224..6406472 | + | 249 | WP_041984717.1 | hypothetical protein | - |
| C4K13_RS29240 () | 6407260..6407523 | - | 264 | WP_041984720.1 | ogr/Delta-like zinc finger family protein | - |
| C4K13_RS29245 () | 6407604..6408542 | - | 939 | WP_041985164.1 | phage portal protein | - |
| C4K13_RS29255 () | 6410609..6411529 | + | 921 | WP_041984726.1 | GPO family capsid scaffolding protein | - |
| C4K13_RS29260 () | 6411531..6412553 | + | 1023 | WP_041984731.1 | phage major capsid protein, P2 family | - |
| C4K13_RS29265 () | 6412550..6413272 | + | 723 | WP_041984734.1 | terminase | - |
| C4K13_RS29270 () | 6413371..6413832 | + | 462 | WP_041984736.1 | head completion/stabilization protein | - |
| C4K13_RS29275 () | 6413829..6414302 | + | 474 | WP_041984738.1 | hypothetical protein | - |
| C4K13_RS29280 () | 6414299..6414751 | + | 453 | WP_041984741.1 | phage tail protein | - |
| C4K13_RS29285 () | 6414738..6415418 | + | 681 | WP_041984743.1 | virion morphogenesis protein | - |
| C4K13_RS29290 () | 6415430..6416545 | + | 1116 | WP_041984745.1 | DUF2586 family protein | - |
| C4K13_RS29295 () | 6416553..6417002 | + | 450 | WP_041984748.1 | DUF2597 family protein | - |
| C4K13_RS29300 () | 6417002..6417214 | + | 213 | WP_028681546.1 | TraR/DksA C4-type zinc finger protein | - |
| C4K13_RS29305 () | 6417310..6417564 | + | 255 | WP_041984753.1 | hypothetical protein | - |
| C4K13_RS29310 () | 6417561..6418094 | + | 534 | WP_041984756.1 | lysozyme | - |
| C4K13_RS29315 () | 6418091..6418594 | + | 504 | WP_052443038.1 | lysis protein | - |
| C4K13_RS29320 () | 6418591..6418881 | + | 291 | WP_041984758.1 | phage protein | - |
| C4K13_RS29325 () | 6419050..6421035 | + | 1986 | WP_041984759.1 | phage tail tape measure protein | - |
| C4K13_RS29330 () | 6421032..6421349 | + | 318 | WP_041984762.1 | DUF2590 family protein | - |
| C4K13_RS29335 () | 6421346..6422521 | + | 1176 | WP_041984765.1 | baseplate J/gp47 family protein | - |
| C4K13_RS29340 () | 6422518..6423042 | + | 525 | WP_028681539.1 | phage tail protein | - |
| C4K13_RS29345 () | 6423052..6424737 | + | 1686 | WP_041984768.1 | phage tail protein | - |
| C4K13_RS29350 () | 6424746..6425453 | + | 708 | WP_041984770.1 | hypothetical protein | - |
| C4K13_RS29355 () | 6425450..6426373 | + | 924 | WP_041984773.1 | hypothetical protein | - |
| C4K13_RS29360 () | 6426370..6426918 | + | 549 | WP_041984775.1 | hypothetical protein | - |
| C4K13_RS29365 () | 6426915..6427619 | + | 705 | WP_041984777.1 | hypothetical protein | - |
| C4K13_RS29370 () | 6427592..6428563 | + | 972 | WP_041984780.1 | hypothetical protein | - |
| C4K13_RS29375 () | 6428560..6429201 | - | 642 | WP_041985169.1 | hypothetical protein | - |
| C4K13_RS29380 () | 6429426..6429608 | + | 183 | WP_028681531.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| C4K13_RS29385 () | 6429641..6430066 | + | 426 | WP_041984783.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| C4K13_RS29390 () | 6430243..6430890 | - | 648 | WP_124355757.1 | hypothetical protein | - |
| C4K13_RS29395 () | 6431732..6431941 | + | 210 | WP_124355758.1 | hypothetical protein | - |
| C4K13_RS29400 () | 6431938..6432564 | + | 627 | WP_052443041.1 | hypothetical protein | VF |
| C4K13_RS29405 () | 6433340..6433981 | + | 642 | WP_052443043.1 | lipopolysaccharide biosynthesis protein | - |
| C4K13_RS29410 () | 6434067..6436421 | - | 2355 | WP_041984790.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| C4K13_RS29415 () | 6436636..6437097 | + | 462 | WP_009051175.1 | Lrp/AsnC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|