MGE detailed information
MGE type: Conjugative plasmid MGE length: 58109 bp
Accession: NZ_CP027588 Location: 1..58109 Organism: Escherichia coli strain 2013C-4974 Replicon: plasmid unnamed
Accession: NZ_CP027588 Location: 1..58109 Organism: Escherichia coli strain 2013C-4974 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6998_RS27995 () | 55..831 | + | 777 | Protein_0 | hypothetical protein | - |
| C6998_RS28915 () | 997..1140 | + | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| C6998_RS28725 () | 1147..1356 | + | 210 | WP_001364569.1 | DUF1281 domain-containing protein | - |
| C6998_RS28730 () | 1338..1543 | + | 206 | Protein_3 | DUF1281 domain-containing protein | - |
| C6998_RS28020 () | 1569..1880 | + | 312 | WP_032321692.1 | hypothetical protein | - |
| C6998_RS28025 () | 1957..2640 | + | 684 | WP_096859263.1 | DNA methylase | - |
| C6998_RS28030 () | 2641..2862 | + | 222 | WP_001104880.1 | hypothetical protein | - |
| C6998_RS28035 () | 2876..3310 | + | 435 | WP_000274428.1 | DUF1380 family protein | - |
| C6998_RS28040 () | 3361..4131 | + | 771 | WP_001364567.1 | hypothetical protein | - |
| C6998_RS28050 () | 4669..4971 | + | 303 | WP_001436678.1 | antirestriction protein | - |
| C6998_RS28055 () | 5018..5440 | + | 423 | WP_000271740.1 | DUF1380 family protein | - |
| C6998_RS28060 () | 5437..5628 | + | 192 | WP_001027522.1 | hypothetical protein | - |
| C6998_RS28070 () | 6197..6730 | + | 534 | WP_000257467.1 | single-stranded DNA-binding protein | - |
| C6998_RS28075 () | 6787..7020 | + | 234 | WP_097453344.1 | DUF905 domain-containing protein | - |
| C6998_RS28080 () | 7084..9040 | + | 1957 | Protein_14 | ParB/RepB/Spo0J family partition protein | - |
| C6998_RS28085 () | 9095..9517 | + | 423 | WP_000845945.1 | conjugation system SOS inhibitor PsiB | - |
| C6998_RS28090 () | 9514..10233 | + | 720 | WP_000116351.1 | plasmid SOS inhibition protein A | - |
| C6998_RS28095 () | 10233..10751 | + | 519 | WP_001178556.1 | hypothetical protein | - |
| - () | 10727..10861 | + | 135 | NuclAT_0 | - | - |
| - () | 10727..10861 | + | 135 | NuclAT_0 | - | - |
| - () | 10727..10861 | + | 135 | NuclAT_0 | - | - |
| - () | 10727..10861 | + | 135 | NuclAT_0 | - | - |
| C6998_RS28105 () | 10927..11088 | + | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6998_RS28920 () | 11326..11595 | - | 270 | WP_000820283.1 | hypothetical protein | - |
| C6998_RS28130 () | 11939..12226 | + | 288 | WP_000107526.1 | hypothetical protein | - |
| C6998_RS28135 () | 12345..13166 | + | 822 | WP_001234493.1 | DUF945 domain-containing protein | - |
| C6998_RS28140 () | 13462..14064 | - | 603 | WP_077539848.1 | hypothetical protein | VF |
| C6998_RS28145 () | 14384..14767 | + | 384 | WP_001151536.1 | relaxosome protein TraM | - |
| C6998_RS28150 () | 14961..15608 | + | 648 | WP_000332527.1 | transcriptional regulator TraJ family protein | - |
| C6998_RS28155 () | 15715..15954 | + | 240 | WP_052611335.1 | conjugal transfer relaxosome protein TraY | - |
| C6998_RS28160 () | 15988..16353 | + | 366 | Protein_26 | type IV conjugative transfer system pilin TraA | - |
| C6998_RS28165 () | 16368..16679 | + | 312 | WP_000012112.1 | type IV conjugative transfer system protein TraL | - |
| C6998_RS28170 () | 16701..17267 | + | 567 | WP_000399772.1 | type IV conjugative transfer system protein TraE | - |
| C6998_RS28175 () | 17278..17982 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C6998_RS28180 () | 17982..19409 | + | 1428 | WP_000146631.1 | conjugal transfer protein TraB | - |
| C6998_RS28185 () | 19399..19983 | + | 585 | WP_000002897.1 | conjugal transfer protein TraP | - |
| C6998_RS28190 () | 19937..20290 | + | 354 | WP_071532440.1 | conjugal transfer protein TrbD | - |
| C6998_RS28195 () | 20328..23942 | + | 3615 | Protein_33 | Multifunctional conjugation protein TraI | Relaxase |
| C6998_RS28200 () | 23962..24708 | + | 747 | WP_000205772.1 | conjugal transfer pilus acetylase TraX | - |
| C6998_RS28205 () | 24767..25627 | + | 861 | WP_000704526.1 | putative protein YcjY | VF |
| C6998_RS28210 () | 25730..26290 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| C6998_RS28215 () | 26420..26632 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| C6998_RS28220 () | 26877..27338 | + | 462 | WP_024177720.1 | thermonuclease family protein | - |
| C6998_RS28225 () | 27384..27593 | + | 210 | WP_057711467.1 | hemolysin expression modulator Hha | - |
| C6998_RS28230 () | 27631..28200 | + | 570 | WP_057711465.1 | DUF2726 domain-containing protein | - |
| C6998_RS28235 () | 28206..29419 | + | 1214 | WP_167579206.1 | IS3 family transposase IS629 | Transposase |
| C6998_RS28925 () | 29422..29694 | - | 273 | WP_000168384.1 | hypothetical protein | - |
| C6998_RS28250 () | 30211..34110 | + | 3900 | WP_106878530.1 | Serine protease EspP | VF |
| C6998_RS28255 () | 34334..35872 | - | 1539 | WP_000998050.1 | IS66 family transposase ISEc8 | Transposase |
| C6998_RS28260 () | 35922..36269 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C6998_RS28265 () | 36266..36646 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C6998_RS28270 () | 36827..37824 | - | 998 | Protein_47 | Lipid A biosynthesis myristoyltransferase | VF |
| C6998_RS28275 () | 37898..39619 | - | 1722 | WP_000550558.1 | phosphoethanolamine transferase CptA | - |
| C6998_RS28280 () | 39709..40815 | - | 1107 | WP_000975744.1 | glycosyltransferase family 4 protein | - |
| C6998_RS28285 () | 40815..41636 | - | 822 | WP_001302199.1 | polysaccharide deacetylase family protein | - |
| C6998_RS28305 () | 44726..45241 | + | 516 | WP_000839950.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| C6998_RS28310 () | 45243..48239 | + | 2997 | WP_000217741.1 | Hemolysin, chromosomal | VF |
| C6998_RS28315 () | 48289..50409 | + | 2121 | WP_000987096.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| C6998_RS28320 () | 50413..51852 | + | 1440 | WP_001213546.1 | Hemolysin secretion protein D, chromosomal | VF |
| C6998_RS28325 () | 52044..52205 | + | 162 | Protein_56 | lipid II-degrading bacteriocin | - |
| C6998_RS28330 () | 52255..52608 | - | 354 | WP_000864811.1 | colicin M immunity protein | - |
| C6998_RS28335 () | 52780..53562 | - | 783 | WP_001164190.1 | site-specific integrase | - |
| C6998_RS28340 () | 53564..53977 | - | 414 | WP_000465048.1 | hypothetical protein | - |
| C6998_RS28350 () | 54538..54768 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| C6998_RS28355 () | 54765..55181 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C6998_RS28360 () | 55343..55648 | - | 306 | WP_000376744.1 | hypothetical protein | - |
| C6998_RS28365 () | 55757..56137 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C6998_RS28370 () | 56134..56481 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C6998_RS28375 () | 56531..58069 | + | 1539 | WP_000998050.1 | IS66 family transposase ISEc8 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|