MGE detailed information
MGE type: Prophage MGE length: 70326 bp
Accession: NZ_CP027582 Location: 964352..1034677 Organism: Escherichia coli strain 2013C-4538 Replicon: chromosome
Accession: NZ_CP027582 Location: 964352..1034677 Organism: Escherichia coli strain 2013C-4538 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6999_RS05000 () | 960495..962306 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| C6999_RS05005 () | 962343..962984 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6999_RS05010 () | 963040..964218 | - | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6999_RS05015 () | 964352..964642 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6999_RS05020 () | 964709..965065 | + | 357 | WP_001295500.1 | protein YebF | - |
| C6999_RS05025 () | 965392..966051 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6999_RS05030 () | 966260..968320 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| C6999_RS05035 () | 968317..968979 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6999_RS05040 () | 969003..969659 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6999_RS05045 () | 969761..969991 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6999_RS05050 () | 970130..970504 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6999_RS05055 () | 970508..971380 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6999_RS05060 () | 971393..971734 | + | 342 | WP_000976492.1 | YebY family protein | - |
| C6999_RS05065 () | 972127..973203 | - | 1077 | WP_001189091.1 | hypothetical protein ; Integrase | Integrase |
| C6999_RS05070 () | 973169..973450 | - | 282 | WP_001443927.1 | excisionase | - |
| C6999_RS05075 () | 973557..973745 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 973561..973739 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 973561..973739 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 973561..973739 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 973561..973739 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| C6999_RS05080 () | 973738..973932 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C6999_RS05085 () | 973989..974798 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
| C6999_RS05090 () | 974791..977442 | - | 2652 | WP_000105101.1 | exodeoxyribonuclease VIII | - |
| C6999_RS05095 () | 977541..977816 | - | 276 | WP_001307773.1 | hypothetical protein | - |
| C6999_RS05100 () | 977890..978066 | - | 177 | WP_000245534.1 | hypothetical protein | - |
| C6999_RS05105 () | 978060..978281 | - | 222 | WP_000560218.1 | killing protein KilR | - |
| C6999_RS05110 () | 978702..978854 | - | 153 | WP_001427316.1 | DUF1391 family protein | - |
| C6999_RS05115 () | 979141..979419 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6999_RS05120 () | 979421..979612 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C6999_RS05125 () | 979633..980004 | - | 372 | WP_001169687.1 | hypothetical protein | - |
| C6999_RS05130 () | 980103..980405 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C6999_RS05135 () | 980402..980827 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C6999_RS05140 () | 980850..981812 | + | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| C6999_RS05145 () | 981819..982560 | + | 742 | Protein_957 | ATP-binding protein | - |
| C6999_RS05150 () | 982586..983347 | + | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| C6999_RS05155 () | 983380..983661 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C6999_RS05160 () | 983658..983885 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C6999_RS05165 () | 983878..984189 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C6999_RS05170 () | 984317..984535 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C6999_RS05175 () | 984537..985094 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C6999_RS05180 () | 985385..985540 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6999_RS05185 () | 985660..986004 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6999_RS05190 () | 986126..986398 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C6999_RS05195 () | 986400..987449 | + | 1050 | WP_032284663.1 | DUF968 domain-containing protein | - |
| C6999_RS05200 () | 987462..987836 | + | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6999_RS05205 () | 987833..988654 | + | 822 | WP_000762928.1 | antitermination protein | - |
| C6999_RS05210 () | 988892..989254 | + | 363 | Protein_970 | tellurite resistance TerB family protein | - |
| C6999_RS05215 () | 989251..989503 | + | 253 | Protein_971 | DUF3927 family protein | - |
| C6999_RS05220 () | 989825..991675 | + | 1851 | WP_032284665.1 | SASA family carbohydrate esterase | - |
| C6999_RS05230 () | 992114..992329 | + | 216 | WP_024164617.1 | class II holin family protein | - |
| C6999_RS05235 () | 992329..992826 | + | 498 | WP_000075132.1 | lysozyme RrrD | - |
| C6999_RS05240 () | 992823..993260 | + | 438 | WP_000092325.1 | lysis protein | - |
| C6999_RS05245 () | 993410..994027 | + | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| C6999_RS05255 () | 994215..994409 | - | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| C6999_RS05265 () | 994798..995343 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| C6999_RS05270 () | 995318..997243 | + | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| C6999_RS05275 () | 997240..997446 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C6999_RS05280 () | 997443..999044 | + | 1602 | WP_024026143.1 | phage portal protein | - |
| C6999_RS05285 () | 999025..1000344 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| C6999_RS05290 () | 1000354..1000686 | + | 333 | WP_001365129.1 | head decoration protein | - |
| C6999_RS05295 () | 1000742..1001767 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| C6999_RS05300 () | 1001809..1002204 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| C6999_RS05305 () | 1002216..1002569 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| C6999_RS05310 () | 1002581..1003159 | + | 579 | WP_000975096.1 | phage tail protein | - |
| C6999_RS05315 () | 1003156..1003551 | + | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| C6999_RS05320 () | 1003559..1004311 | + | 753 | WP_032325228.1 | phage tail protein | - |
| C6999_RS05325 () | 1004325..1004747 | + | 423 | WP_000479045.1 | phage minor tail protein G | - |
| C6999_RS05330 () | 1004774..1005187 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C6999_RS05335 () | 1005168..1007780 | + | 2613 | WP_106875406.1 | phage tail tape measure protein | - |
| C6999_RS05340 () | 1007777..1008106 | + | 330 | WP_000847280.1 | phage tail protein | - |
| C6999_RS05345 () | 1008106..1008804 | + | 699 | WP_032284485.1 | phage minor tail protein L | - |
| C6999_RS05350 () | 1008815..1009558 | + | 744 | WP_106875407.1 | C40 family peptidase | - |
| C6999_RS05355 () | 1009504..1010136 | + | 633 | WP_072148784.1 | tail assembly protein | - |
| C6999_RS05360 () | 1010382..1013774 | + | 3393 | WP_106875408.1 | host specificity protein J | - |
| C6999_RS05365 () | 1013842..1014441 | + | 600 | WP_001230428.1 | hypothetical protein | VF |
| C6999_RS05370 () | 1014506..1015819 | + | 1314 | WP_032284483.1 | ISNCY family transposase KIS | Transposase |
| C6999_RS05375 () | 1015821..1016090 | + | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6999_RS05380 () | 1016231..1017106 | + | 876 | WP_000491545.1 | hypothetical protein | VF |
| C6999_RS31255 () | 1017331..1017981 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| C6999_RS05395 () | 1017985..1018251 | - | 267 | Protein_1003 | hypothetical protein | - |
| C6999_RS05400 () | 1018936..1019592 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6999_RS05405 () | 1019593..1019784 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6999_RS05410 () | 1019889..1020125 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6999_RS05415 () | 1020243..1021682 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6999_RS05420 () | 1021762..1024395 | - | 2634 | WP_001299674.1 | hypothetical protein | VF |
| C6999_RS05425 () | 1024364..1025647 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| C6999_RS05430 () | 1025777..1026274 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C6999_RS05435 () | 1026371..1027069 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C6999_RS05440 () | 1027089..1029137 | + | 2049 | WP_001427396.1 | carboxy terminal-processing peptidase | - |
| C6999_RS05445 () | 1029329..1030210 | + | 882 | WP_000984517.1 | protease HtpX | - |
| C6999_RS05450 () | 1030256..1031629 | - | 1374 | WP_001127210.1 | MFS transporter | - |
| C6999_RS05455 () | 1031806..1032597 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| C6999_RS05460 () | 1032740..1032979 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| C6999_RS05465 () | 1033138..1033281 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C6999_RS05470 () | 1033356..1033643 | + | 288 | WP_001006866.1 | YebO family protein | - |
| C6999_RS05480 () | 1034312..1034455 | + | 144 | WP_001295496.1 | YobF family protein | - |
| C6999_RS05485 () | 1034468..1034677 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C6999_RS05490 () | 1034843..1035652 | + | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C6999_RS05495 () | 1035649..1036215 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| C6999_RS05505 () | 1036644..1037102 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| C6999_RS05510 () | 1037157..1038008 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| C6999_RS05515 () | 1038021..1038821 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|