MGE detailed information
MGE type: Prophage MGE length: 96327 bp
Accession: NZ_CP027582 Location: 1847682..1944008 Organism: Escherichia coli strain 2013C-4538 Replicon: chromosome
Accession: NZ_CP027582 Location: 1847682..1944008 Organism: Escherichia coli strain 2013C-4538 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6999_RS09980 () | 1842752..1843393 | + | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
| C6999_RS09985 () | 1843397..1844767 | + | 1371 | WP_000423729.1 | adenylosuccinate lyase | - |
| C6999_RS09990 () | 1844935..1845606 | + | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
| C6999_RS09995 () | 1845606..1847066 | + | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| C6999_RS10000 () | 1847682..1847963 | - | 282 | WP_000133415.1 | hypothetical protein | - |
| C6999_RS10005 () | 1847977..1849638 | - | 1662 | WP_000127884.1 | terminase large subunit | - |
| C6999_RS10010 () | 1849622..1849978 | - | 357 | WP_000113646.1 | phage terminase small subunit P27 family | - |
| C6999_RS31665 () | 1850101..1850283 | - | 183 | WP_000174068.1 | hypothetical protein | - |
| C6999_RS10020 () | 1850267..1850707 | - | 441 | WP_001145906.1 | HNH endonuclease | - |
| C6999_RS10025 () | 1850707..1851003 | - | 297 | WP_000134114.1 | head-tail connector protein | - |
| C6999_RS10030 () | 1851000..1851338 | - | 339 | WP_001020669.1 | phage head closure protein | - |
| C6999_RS10035 () | 1851335..1852546 | - | 1212 | WP_000267608.1 | phage portal protein | - |
| C6999_RS10040 () | 1852548..1853120 | - | 573 | WP_000504047.1 | HK97 family phage prohead protease | - |
| C6999_RS10045 () | 1853160..1854317 | - | 1158 | WP_001137338.1 | phage major capsid protein | - |
| C6999_RS10050 () | 1854609..1854833 | - | 225 | WP_001132080.1 | hypothetical protein | - |
| C6999_RS10060 () | 1854959..1855231 | - | 273 | WP_000233311.1 | PerC family transcriptional regulator | - |
| C6999_RS10065 () | 1855244..1855654 | - | 411 | WP_000126670.1 | single-stranded DNA-binding protein | - |
| C6999_RS31670 () | 1855664..1855969 | - | 306 | WP_001294169.1 | hypothetical protein | - |
| C6999_RS10075 () | 1855966..1856217 | - | 252 | WP_001080642.1 | hypothetical protein | - |
| C6999_RS10085 () | 1856420..1857817 | - | 1398 | WP_000833614.1 | helicase RepA family protein | - |
| C6999_RS10090 () | 1857814..1858113 | - | 300 | WP_000770163.1 | DUF4222 domain-containing protein | - |
| C6999_RS10095 () | 1858119..1858352 | - | 234 | WP_001204967.1 | hypothetical protein | - |
| C6999_RS10100 () | 1858354..1858575 | - | 222 | WP_001204070.1 | hypothetical protein | - |
| C6999_RS10105 () | 1858568..1858933 | - | 366 | WP_000551751.1 | hypothetical protein | - |
| C6999_RS10110 () | 1858926..1859150 | - | 225 | WP_000336141.1 | hypothetical protein | - |
| C6999_RS10115 () | 1859140..1859370 | - | 231 | WP_000076671.1 | hypothetical protein | - |
| C6999_RS10120 () | 1859367..1860644 | - | 1278 | WP_001502337.1 | host cell division inhibitor Icd-like protein | - |
| C6999_RS10125 () | 1860697..1860885 | - | 189 | WP_000953274.1 | AlpA family transcriptional regulator | - |
| C6999_RS10130 () | 1861250..1862479 | - | 1230 | WP_000085269.1 | hypothetical protein ; Integrase | Integrase |
| C6999_RS10135 () | 1862728..1863849 | + | 1122 | WP_000456506.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| C6999_RS10140 () | 1863995..1865224 | - | 1230 | WP_000359438.1 | peptidase T | - |
| C6999_RS10150 () | 1865474..1866610 | + | 1137 | WP_000531601.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C6999_RS10155 () | 1866594..1867457 | + | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| C6999_RS10165 () | 1867731..1868321 | - | 591 | WP_001132165.1 | hypothetical protein | VF |
| C6999_RS10170 () | 1868504..1869154 | + | 651 | WP_001144080.1 | hypothetical protein | VF |
| C6999_RS10175 () | 1869229..1870287 | + | 1059 | WP_001299273.1 | hypothetical protein | VF |
| C6999_RS10180 () | 1870415..1871050 | - | 636 | WP_012816780.1 | hypothetical protein | VF |
| C6999_RS10185 () | 1871118..1871699 | - | 582 | WP_001118085.1 | hypothetical protein | VF |
| C6999_RS10190 () | 1871990..1872565 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| C6999_RS10195 () | 1872679..1872948 | - | 270 | WP_001023435.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6999_RS10200 () | 1872950..1874263 | - | 1314 | WP_044723507.1 | ISNCY family transposase KIS | Transposase |
| C6999_RS10205 () | 1874329..1874952 | - | 624 | WP_001216290.1 | hypothetical protein | VF |
| C6999_RS10210 () | 1875021..1878497 | - | 3477 | WP_106875424.1 | host specificity protein J | - |
| C6999_RS10215 () | 1878743..1879375 | - | 633 | WP_158707427.1 | tail assembly protein | - |
| C6999_RS10220 () | 1879321..1880064 | - | 744 | WP_000194723.1 | C40 family peptidase | - |
| C6999_RS10225 () | 1880075..1880773 | - | 699 | WP_001335877.1 | phage minor tail protein L | - |
| C6999_RS10230 () | 1880773..1881114 | - | 342 | WP_000807940.1 | phage tail protein | - |
| C6999_RS10235 () | 1881107..1884349 | - | 3243 | WP_000212980.1 | phage tail tape measure protein | - |
| C6999_RS10240 () | 1884397..1884606 | - | 210 | WP_001513217.1 | DUF4035 domain-containing protein | - |
| C6999_RS10245 () | 1884702..1885076 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| C6999_RS10250 () | 1885091..1885807 | - | 717 | WP_058157545.1 | immunoglobulin domain-containing protein | - |
| C6999_RS10255 () | 1885874..1886218 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C6999_RS10260 () | 1886215..1886661 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| C6999_RS10265 () | 1886658..1887008 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| C6999_RS10270 () | 1887018..1887344 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| C6999_RS10275 () | 1887341..1889850 | - | 2510 | Protein_1905 | phage portal protein | - |
| C6999_RS10280 () | 1889796..1890017 | - | 222 | WP_001063025.1 | hypothetical protein | - |
| C6999_RS10285 () | 1890062..1891999 | - | 1938 | WP_106875421.1 | phage major capsid protein | - |
| C6999_RS10290 () | 1892063..1893724 | - | 1662 | WP_106875426.1 | terminase large subunit | - |
| C6999_RS10295 () | 1893721..1894284 | - | 564 | WP_000958380.1 | terminase small subunit | - |
| C6999_RS10305 () | 1894577..1894942 | - | 366 | WP_001427183.1 | HNH endonuclease | - |
| C6999_RS10310 () | 1894984..1895211 | + | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C6999_RS10315 () | 1895580..1895804 | - | 225 | WP_000736096.1 | hypothetical protein | - |
| C6999_RS10320 () | 1895801..1896295 | - | 495 | WP_001427182.1 | lysis protein | - |
| C6999_RS10325 () | 1896297..1896383 | - | 87 | WP_032140280.1 | hypothetical protein | - |
| C6999_RS10335 () | 1896938..1897471 | - | 534 | WP_001003120.1 | lysozyme | - |
| C6999_RS10345 () | 1897631..1897903 | + | 273 | WP_000138558.1 | hypothetical protein | - |
| C6999_RS10355 () | 1898159..1898374 | - | 216 | WP_024182511.1 | class II holin family protein | - |
| C6999_RS10365 () | 1898813..1900663 | - | 1851 | WP_000874393.1 | SASA family carbohydrate esterase | - |
| C6999_RS10390 () | 1901431..1902144 | - | 714 | WP_000261909.1 | helix-turn-helix domain-containing protein | - |
| C6999_RS10395 () | 1902282..1902478 | - | 197 | Protein_1920 | TrmB family transcriptional regulator | - |
| C6999_RS10400 () | 1902765..1903583 | - | 819 | WP_000265267.1 | CPBP family intramembrane metalloprotease | - |
| C6999_RS10405 () | 1903735..1904106 | - | 372 | WP_000090264.1 | antitermination protein | - |
| C6999_RS10410 () | 1904096..1904467 | - | 372 | WP_001217436.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6999_RS10415 () | 1904480..1905529 | - | 1050 | WP_001265140.1 | DUF968 domain-containing protein | - |
| C6999_RS10420 () | 1905531..1905809 | - | 279 | WP_001341388.1 | hypothetical protein | - |
| C6999_RS10425 () | 1905977..1906132 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6999_RS10430 () | 1906737..1907510 | + | 774 | WP_000160654.1 | alpha/beta hydrolase | - |
| C6999_RS10435 () | 1907862..1908275 | - | 414 | WP_106875427.1 | DUF977 family protein | - |
| C6999_RS10440 () | 1908291..1909061 | - | 771 | WP_000450992.1 | DUF1627 domain-containing protein | - |
| C6999_RS10445 () | 1909083..1909829 | - | 747 | WP_000788750.1 | ATP-binding protein | - |
| C6999_RS10450 () | 1909836..1910927 | - | 1092 | WP_001205823.1 | hypothetical protein | - |
| C6999_RS10455 () | 1911006..1911461 | + | 456 | WP_000273724.1 | hypothetical protein | - |
| C6999_RS10460 () | 1911667..1912092 | - | 426 | WP_000693855.1 | Rha family transcriptional regulator | - |
| C6999_RS10465 () | 1912076..1912348 | - | 273 | WP_000887453.1 | helix-turn-helix domain-containing protein | - |
| C6999_RS10470 () | 1912457..1912858 | + | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
| C6999_RS10475 () | 1912886..1913077 | + | 192 | WP_000536233.1 | hypothetical protein | Antitoxin Detail |
| C6999_RS10480 () | 1913077..1913364 | + | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6999_RS10485 () | 1913641..1913796 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C6999_RS10495 () | 1913938..1914327 | + | 390 | WP_000394511.1 | hypothetical protein | - |
| C6999_RS10500 () | 1914514..1914699 | - | 186 | WP_001133046.1 | hypothetical protein | - |
| C6999_RS10510 () | 1915273..1915461 | + | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
| C6999_RS10515 () | 1915458..1915649 | + | 192 | WP_001098307.1 | DUF1482 family protein | - |
| C6999_RS10520 () | 1915743..1918214 | + | 2472 | WP_032278809.1 | exonuclease | - |
| C6999_RS10525 () | 1918282..1918524 | + | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| C6999_RS10530 () | 1918502..1919521 | + | 1020 | WP_001299351.1 | hypothetical protein ; Integrase | Integrase |
| C6999_RS10535 () | 1919663..1919767 | - | 105 | Protein_1946 | DUF1737 domain-containing protein | - |
| C6999_RS10540 () | 1920086..1920341 | - | 256 | Protein_1947 | DUF3927 family protein | - |
| C6999_RS10545 () | 1920338..1920769 | - | 432 | WP_001427258.1 | tellurite resistance TerB family protein | - |
| C6999_RS10560 () | 1921335..1922156 | - | 822 | WP_000762928.1 | antitermination protein | - |
| C6999_RS10565 () | 1922153..1922527 | - | 375 | WP_001217410.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6999_RS10570 () | 1922540..1923589 | - | 1050 | WP_106875428.1 | DUF968 domain-containing protein | - |
| C6999_RS10575 () | 1923591..1923863 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| C6999_RS10580 () | 1923985..1924329 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6999_RS10585 () | 1924449..1924604 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6999_RS10590 () | 1924895..1925452 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C6999_RS10595 () | 1925454..1925672 | - | 219 | WP_000683607.1 | DUF4014 family protein | - |
| C6999_RS10600 () | 1925775..1926110 | - | 336 | WP_001365112.1 | hypothetical protein | - |
| C6999_RS10605 () | 1926103..1926330 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| C6999_RS10610 () | 1926327..1926608 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| C6999_RS10615 () | 1926641..1927402 | - | 762 | WP_032284689.1 | DUF1627 domain-containing protein | - |
| C6999_RS10620 () | 1927424..1928170 | - | 747 | WP_000788758.1 | ATP-binding protein | - |
| C6999_RS10625 () | 1928177..1929247 | - | 1071 | WP_001262372.1 | hypothetical protein | - |
| C6999_RS10630 () | 1929319..1929744 | - | 426 | WP_000693928.1 | Rha family transcriptional regulator | - |
| C6999_RS10635 () | 1929728..1930051 | - | 324 | WP_000711018.1 | transcriptional regulator | - |
| C6999_RS10640 () | 1930176..1930652 | + | 477 | WP_000948454.1 | hypothetical protein | - |
| C6999_RS10645 () | 1930971..1931123 | + | 153 | WP_000379610.1 | DUF1391 family protein | - |
| C6999_RS10655 () | 1931613..1931801 | + | 189 | WP_001358566.1 | cell division inhibition protein DicB | - |
| C6999_RS10660 () | 1931798..1931989 | + | 192 | WP_001365098.1 | lysis protein YdfD | - |
| C6999_RS10665 () | 1932083..1934554 | + | 2472 | WP_000048279.1 | exonuclease | - |
| C6999_RS10670 () | 1934616..1934885 | + | 270 | WP_000003742.1 | excisionase | - |
| C6999_RS10675 () | 1934854..1935972 | + | 1119 | WP_000074973.1 | hypothetical protein ; Integrase | Integrase |
| C6999_RS10680 () | 1936049..1936393 | - | 345 | WP_001427255.1 | DUF2335 domain-containing protein | - |
| C6999_RS10685 () | 1936494..1936697 | - | 204 | WP_000824186.1 | hypothetical protein | - |
| C6999_RS10690 () | 1937006..1937800 | + | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| C6999_RS10695 () | 1937797..1938843 | + | 1047 | WP_000759317.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| C6999_RS10700 () | 1938901..1939362 | + | 462 | WP_001341497.1 | DUF3592 domain-containing protein | - |
| C6999_RS10705 () | 1939359..1940147 | + | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| C6999_RS10710 () | 1940286..1941107 | - | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| C6999_RS10715 () | 1941123..1942034 | - | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| C6999_RS10720 () | 1942063..1943307 | - | 1245 | WP_001251348.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| C6999_RS10725 () | 1943307..1944008 | - | 702 | WP_001033694.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C6999_RS10730 () | 1944001..1945200 | - | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| C6999_RS10735 () | 1945462..1946535 | + | 1074 | WP_000810250.1 | acyltransferase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|