MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 54544 bp
Accession: NZ_CP027580 Location: 1..54544 Organism: Escherichia coli strain 2013C-4282 Replicon: plasmid unnamed1
Accession: NZ_CP027580 Location: 1..54544 Organism: Escherichia coli strain 2013C-4282 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6996_RS25305 () | 111..615 | + | 505 | Protein_0 | type IV conjugative transfer system protein TraE | - |
| C6996_RS25310 () | 612..1340 | + | 729 | Protein_1 | type-F conjugative transfer system secretin TraK | - |
| C6996_RS25315 () | 1340..2769 | + | 1430 | Protein_2 | conjugal transfer protein TraB | - |
| C6996_RS25320 () | 2759..3346 | + | 588 | WP_106907803.1 | conjugal transfer protein TraP | - |
| C6996_RS25325 () | 3300..3605 | + | 306 | WP_106907804.1 | conjugal transfer protein TrbD | - |
| C6996_RS25330 () | 3647..3898 | + | 252 | WP_001038339.1 | conjugal transfer protein TrbG | - |
| C6996_RS25335 () | 3895..4410 | + | 516 | WP_000809870.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6996_RS25340 () | 4545..4766 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| C6996_RS25345 () | 4759..5232 | + | 474 | WP_032206656.1 | hypothetical protein | - |
| C6996_RS25350 () | 5312..5530 | + | 219 | WP_106907805.1 | hypothetical protein | - |
| C6996_RS26775 () | 5558..5905 | + | 348 | WP_000836690.1 | hypothetical protein | - |
| C6996_RS25360 () | 6036..8666 | + | 2631 | WP_106907806.1 | type IV secretion system protein TraC | - |
| C6996_RS25365 () | 8663..9049 | + | 387 | WP_000214090.1 | type-F conjugative transfer system protein TrbI | - |
| C6996_RS25370 () | 9046..9678 | + | 633 | WP_000877291.1 | type-F conjugative transfer system protein TraW | - |
| C6996_RS25375 () | 9675..10667 | + | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| C6996_RS25380 () | 10688..10867 | + | 180 | WP_000970212.1 | hypothetical protein | - |
| C6996_RS25385 () | 10864..11103 | - | 240 | WP_001066128.1 | hypothetical protein | - |
| C6996_RS25390 () | 11296..11934 | + | 639 | WP_001562875.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6996_RS25395 () | 11931..12311 | + | 381 | WP_000056343.1 | hypothetical protein | - |
| C6996_RS25400 () | 12471..14309 | + | 1839 | WP_088376917.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6996_RS25405 () | 14323..14580 | + | 258 | WP_140421805.1 | conjugal transfer protein TrbE | - |
| C6996_RS25410 () | 14573..15316 | + | 744 | WP_001030373.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6996_RS25415 () | 15330..15671 | + | 342 | WP_000556797.1 | conjugal transfer protein TrbA | - |
| C6996_RS25425 () | 16067..16357 | + | 291 | WP_021521297.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6996_RS25430 () | 16344..16889 | + | 546 | WP_088376916.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6996_RS25435 () | 16819..17160 | + | 342 | WP_088376908.1 | P-type conjugative transfer protein TrbJ | - |
| C6996_RS25440 () | 17108..17533 | + | 426 | WP_071999353.1 | F-type conjugal transfer protein TrbF | - |
| C6996_RS25445 () | 17520..18893 | + | 1374 | WP_032305007.1 | conjugal transfer protein TraH | - |
| C6996_RS25450 () | 18890..21711 | + | 2822 | Protein_28 | conjugal transfer mating pair stabilization protein TraG | - |
| C6996_RS25455 () | 21727..22223 | + | 497 | Protein_29 | entry exclusion protein | - |
| C6996_RS25460 () | 22255..22986 | + | 732 | WP_053293982.1 | complement resistance protein TraT | - |
| C6996_RS25465 () | 23190..23669 | + | 480 | WP_001473214.1 | hypothetical protein | - |
| C6996_RS25470 () | 23951..26201 | + | 2251 | Protein_32 | type IV conjugative transfer system coupling protein TraD | - |
| C6996_RS26780 () | 26201..31462 | + | 5262 | Protein_33 | conjugative transfer relaxase/helicase TraI | - |
| C6996_RS25490 () | 31482..32228 | + | 747 | WP_052892416.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| C6996_RS25495 () | 32311..32678 | + | 368 | Protein_35 | NirD/YgiW/YdeI family stress tolerance protein | - |
| C6996_RS25500 () | 32714..33271 | + | 558 | WP_024213676.1 | fertility inhibition protein FinO | - |
| C6996_RS25510 () | 34366..34827 | + | 462 | WP_000760082.1 | thermonuclease family protein | - |
| - () | 35486..35542 | - | 57 | NuclAT_1 | - | - |
| - () | 35486..35542 | - | 57 | NuclAT_1 | - | - |
| - () | 35486..35542 | - | 57 | NuclAT_1 | - | - |
| - () | 35486..35542 | - | 57 | NuclAT_1 | - | - |
| C6996_RS25525 () | 35534..35740 | + | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6996_RS26785 () | 36024..36272 | + | 249 | Protein_39 | replication regulatory protein RepA | - |
| C6996_RS25540 () | 36519..36593 | + | 75 | WP_001365571.1 | RepA leader peptide Tap | - |
| C6996_RS25545 () | 36586..37443 | + | 858 | WP_000130991.1 | incFII family plasmid replication initiator RepA | - |
| C6996_RS25560 () | 38358..38627 | + | 270 | WP_000079943.1 | hypothetical protein | Antitoxin Detail |
| C6996_RS25565 () | 38624..38905 | + | 282 | WP_000970004.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6996_RS25570 () | 39014..39364 | - | 351 | WP_001365718.1 | plasmid partitioning/stability family protein | - |
| C6996_RS25575 () | 39367..40329 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| C6996_RS25585 () | 40879..41781 | + | 903 | WP_088137943.1 | DUF1281 domain-containing protein | - |
| C6996_RS25590 () | 41778..42090 | + | 313 | Protein_47 | hypothetical protein | - |
| C6996_RS25595 () | 42166..42849 | + | 684 | WP_000086155.1 | DNA methylase | - |
| C6996_RS25600 () | 42850..43071 | + | 222 | WP_001104895.1 | hypothetical protein | - |
| C6996_RS25605 () | 43085..43519 | + | 435 | WP_000274463.1 | DUF1380 family protein | - |
| C6996_RS25610 () | 43564..44334 | + | 771 | WP_032305180.1 | hypothetical protein | - |
| C6996_RS25620 () | 44872..45174 | + | 303 | WP_001364029.1 | antirestriction protein | - |
| C6996_RS25625 () | 45221..45640 | + | 420 | WP_000271696.1 | DUF1380 family protein | - |
| C6996_RS25630 () | 45640..45831 | + | 192 | WP_001027514.1 | hypothetical protein | - |
| C6996_RS26790 () | 45810..46115 | - | 306 | WP_201309430.1 | pilus assembly protein | - |
| C6996_RS25645 () | 46789..47019 | + | 231 | WP_032209728.1 | hypothetical protein | - |
| C6996_RS25650 () | 47071..48432 | + | 1362 | WP_047091120.1 | DUF3560 domain-containing protein | - |
| C6996_RS25655 () | 48478..49041 | + | 564 | WP_032305464.1 | class I SAM-dependent methyltransferase | - |
| C6996_RS25660 () | 49022..49390 | - | 369 | WP_141033683.1 | pilus protein | - |
| C6996_RS25670 () | 49872..50393 | + | 522 | WP_032107538.1 | single-stranded DNA-binding protein | - |
| C6996_RS25680 () | 50451..50684 | + | 234 | WP_000005993.1 | DUF905 family protein | - |
| C6996_RS25685 () | 50745..52705 | + | 1961 | Protein_62 | ParB/RepB/Spo0J family partition protein | - |
| C6996_RS25690 () | 52759..53193 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| C6996_RS25695 () | 53190..53905 | + | 716 | Protein_64 | plasmid SOS inhibition protein A | - |
| C6996_RS25700 () | 53902..54214 | + | 313 | Protein_65 | theronine dehydrogenase | - |
| - () | 54166..54358 | + | 193 | NuclAT_0 | - | - |
| - () | 54166..54358 | + | 193 | NuclAT_0 | - | - |
| - () | 54166..54358 | + | 193 | NuclAT_0 | - | - |
| - () | 54166..54358 | + | 193 | NuclAT_0 | - | - |
| C6996_RS25710 () | 54365..54544 | + | 180 | WP_106907808.1 | FlmC family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|