MGE detailed information
MGE type: Prophage MGE length: 78700 bp
Accession: NZ_CP027577 Location: 3917494..3996193 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Accession: NZ_CP027577 Location: 3917494..3996193 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6997_RS21400 () | 3913350..3914150 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C6997_RS21405 () | 3914163..3915014 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| C6997_RS21410 () | 3915069..3915527 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| C6997_RS21420 () | 3915956..3916522 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| C6997_RS21425 () | 3916519..3917328 | - | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C6997_RS21430 () | 3917494..3917703 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C6997_RS21435 () | 3917716..3917859 | - | 144 | WP_001295496.1 | YobF family protein | - |
| C6997_RS21445 () | 3918528..3918815 | - | 288 | WP_001006866.1 | YebO family protein | - |
| C6997_RS21450 () | 3918890..3919033 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C6997_RS21455 () | 3919192..3919431 | + | 240 | WP_001211011.1 | hypothetical protein | - |
| C6997_RS21460 () | 3919574..3920365 | - | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| C6997_RS21465 () | 3920542..3921915 | + | 1374 | WP_001127210.1 | MFS transporter | - |
| C6997_RS21470 () | 3921961..3922842 | - | 882 | WP_000984517.1 | protease HtpX | - |
| C6997_RS21475 () | 3923034..3925082 | - | 2049 | WP_001427396.1 | carboxy terminal-processing peptidase | - |
| C6997_RS21480 () | 3925102..3925800 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C6997_RS21485 () | 3925897..3926394 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C6997_RS21490 () | 3926524..3927807 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| C6997_RS21495 () | 3927776..3930409 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| C6997_RS21500 () | 3930489..3931928 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6997_RS21505 () | 3932046..3932282 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6997_RS21510 () | 3932387..3932578 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6997_RS21515 () | 3932579..3933235 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6997_RS21520 () | 3933920..3934186 | + | 267 | Protein_3897 | hypothetical protein | - |
| C6997_RS31355 () | 3934190..3934840 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| C6997_RS21535 () | 3935065..3935940 | - | 876 | WP_000491545.1 | hypothetical protein | VF |
| C6997_RS21540 () | 3936081..3936350 | - | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6997_RS21545 () | 3936352..3937665 | - | 1314 | WP_106918353.1 | ISNCY family transposase KIS | Transposase |
| C6997_RS21550 () | 3937730..3938329 | - | 600 | WP_001230428.1 | hypothetical protein | VF |
| C6997_RS21555 () | 3938397..3941870 | - | 3474 | WP_106918354.1 | host specificity protein J | - |
| C6997_RS21560 () | 3942004..3942531 | + | 528 | WP_000649829.1 | hypothetical protein | VF |
| C6997_RS21570 () | 3942722..3943354 | - | 633 | WP_072280596.1 | tail assembly protein | - |
| C6997_RS21575 () | 3943300..3944043 | - | 744 | WP_009445180.1 | C40 family peptidase | - |
| C6997_RS21580 () | 3944054..3944752 | - | 699 | WP_001179486.1 | phage minor tail protein L | - |
| C6997_RS21585 () | 3944752..3945093 | - | 342 | WP_000807964.1 | phage tail protein | - |
| C6997_RS21590 () | 3945086..3948328 | - | 3243 | WP_106918332.1 | phage tail tape measure protein | - |
| C6997_RS21595 () | 3948380..3948589 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C6997_RS21600 () | 3948685..3949059 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C6997_RS21605 () | 3949065..3949781 | - | 717 | WP_001275471.1 | tail protein | - |
| C6997_RS21610 () | 3949847..3950191 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C6997_RS21615 () | 3950188..3950634 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C6997_RS21620 () | 3950631..3950981 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| C6997_RS21625 () | 3950991..3951317 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| C6997_RS21630 () | 3951314..3953898 | - | 2585 | Protein_3917 | phage portal protein | - |
| C6997_RS21635 () | 3953844..3954065 | - | 222 | WP_001063110.1 | hypothetical protein | - |
| C6997_RS21640 () | 3954110..3956047 | - | 1938 | WP_000173079.1 | phage major capsid protein | - |
| C6997_RS21645 () | 3956111..3957772 | - | 1662 | WP_001368653.1 | terminase large subunit | - |
| C6997_RS21650 () | 3957769..3958332 | - | 564 | WP_000958380.1 | terminase small subunit | - |
| C6997_RS21660 () | 3958621..3958986 | - | 366 | WP_000829190.1 | HNH endonuclease | - |
| C6997_RS21665 () | 3959028..3959228 | + | 201 | WP_000095741.1 | YlcI/YnfO family protein | - |
| C6997_RS21670 () | 3959360..3959686 | - | 327 | WP_000828068.1 | TonB family protein | - |
| C6997_RS21685 () | 3960032..3960583 | - | 552 | WP_001109019.1 | Rha family transcriptional regulator | - |
| C6997_RS31360 () | 3960822..3961007 | - | 186 | WP_071529499.1 | Rz1 family lipoprotein | - |
| C6997_RS31370 () | 3961230..3961361 | - | 132 | WP_001280922.1 | hypothetical protein | - |
| C6997_RS21695 () | 3961456..3962151 | - | 696 | WP_000661712.1 | phage antirepressor protein | - |
| C6997_RS21700 () | 3962425..3962958 | - | 534 | WP_000087733.1 | lysozyme | - |
| C6997_RS21705 () | 3962963..3963178 | - | 216 | WP_001072901.1 | class II holin family protein | - |
| C6997_RS21710 () | 3963255..3963527 | - | 273 | WP_001290221.1 | DUF826 domain-containing protein | - |
| C6997_RS21715 () | 3963568..3963747 | - | 180 | WP_000143458.1 | DUF1378 family protein | - |
| C6997_RS21720 () | 3963883..3965820 | - | 1938 | WP_106918355.1 | DUF1737 domain-containing protein | - |
| C6997_RS21730 () | 3965926..3966603 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS21735 () | 3966603..3966950 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS21740 () | 3966970..3968541 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS21745 () | 3968847..3969102 | - | 256 | Protein_3937 | DUF3927 family protein | - |
| C6997_RS21750 () | 3969099..3969530 | - | 432 | WP_000466957.1 | tellurite resistance TerB family protein | - |
| C6997_RS21770 () | 3969980..3970693 | - | 714 | WP_000301785.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS21775 () | 3970828..3971025 | - | 198 | WP_000917767.1 | hypothetical protein | - |
| C6997_RS21785 () | 3971269..3971850 | - | 582 | WP_000211431.1 | ORF6N domain-containing protein | - |
| C6997_RS21795 () | 3972121..3972675 | - | 555 | WP_000640124.1 | DUF1133 family protein | - |
| C6997_RS21800 () | 3972672..3972962 | - | 291 | WP_000228018.1 | DUF1364 domain-containing protein | - |
| C6997_RS21805 () | 3972962..3973561 | - | 600 | WP_000940309.1 | DUF1367 family protein | - |
| C6997_RS21815 () | 3974120..3974275 | - | 156 | WP_023442312.1 | type I toxin-antitoxin system toxin HokD | - |
| C6997_RS21820 () | 3974421..3976250 | + | 1830 | WP_000107695.1 | AAA family ATPase | - |
| C6997_RS21825 () | 3976274..3977314 | + | 1041 | WP_000721512.1 | DNA cytosine methyltransferase | - |
| C6997_RS21830 () | 3977348..3977779 | - | 432 | WP_001141109.1 | DUF977 family protein | - |
| C6997_RS21835 () | 3977795..3978565 | - | 771 | WP_000450657.1 | DUF1627 domain-containing protein | - |
| C6997_RS21840 () | 3978588..3979334 | - | 747 | WP_000788774.1 | ATP-binding protein | - |
| C6997_RS21845 () | 3979341..3980129 | - | 789 | WP_001427413.1 | hypothetical protein | - |
| C6997_RS21850 () | 3980207..3980629 | - | 423 | WP_000702028.1 | hypothetical protein | - |
| C6997_RS21855 () | 3980626..3980868 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS21860 () | 3980965..3981384 | + | 420 | WP_000410105.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS21865 () | 3981691..3981843 | + | 153 | WP_000379547.1 | DUF1391 family protein | - |
| C6997_RS21870 () | 3982264..3982485 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| C6997_RS21875 () | 3982479..3982655 | + | 177 | WP_000245534.1 | hypothetical protein | - |
| C6997_RS21880 () | 3982729..3983004 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| C6997_RS21885 () | 3983103..3985754 | + | 2652 | WP_000105102.1 | exodeoxyribonuclease VIII | - |
| C6997_RS21890 () | 3985747..3986556 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| C6997_RS21895 () | 3986613..3986807 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6997_RS21900 () | 3986800..3986988 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 3986806..3986984 | - | 179 | NuclAT_1 | - | - |
| - () | 3986806..3986984 | - | 179 | NuclAT_1 | - | - |
| - () | 3986806..3986984 | - | 179 | NuclAT_1 | - | - |
| - () | 3986806..3986984 | - | 179 | NuclAT_1 | - | - |
| C6997_RS21905 () | 3987095..3987376 | + | 282 | WP_001443927.1 | excisionase | - |
| C6997_RS21910 () | 3987342..3988418 | + | 1077 | WP_001189091.1 | hypothetical protein ; Integrase | Integrase |
| - () | 3988549..3988783 | + | 235 | - | - | Antitoxin Detail |
| - () | 3988550..3988653 | - | 104 | - | - | Toxin Detail |
| C6997_RS21915 () | 3988811..3989152 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6997_RS21920 () | 3989165..3990037 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6997_RS21925 () | 3990041..3990415 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6997_RS21930 () | 3990554..3990784 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6997_RS21935 () | 3990886..3991542 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6997_RS21940 () | 3991566..3992228 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6997_RS21945 () | 3992225..3994285 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| C6997_RS21950 () | 3994494..3995153 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6997_RS21955 () | 3995480..3995836 | - | 357 | WP_001295500.1 | protein YebF | - |
| C6997_RS21960 () | 3995903..3996193 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6997_RS21965 () | 3996327..3997505 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6997_RS21970 () | 3997561..3998202 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6997_RS21975 () | 3998239..4000050 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|