MGE detailed information
MGE type: Prophage MGE length: 63955 bp
Accession: NZ_CP027577 Location: 3316101..3380055 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Accession: NZ_CP027577 Location: 3316101..3380055 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6997_RS31820 () | 3312090..3312137 | + | 48 | WP_211180494.1 | protein YnaN | - |
| C6997_RS18025 () | 3312151..3313134 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| C6997_RS18035 () | 3313612..3314985 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| C6997_RS18040 () | 3315114..3316049 | - | 936 | WP_001157401.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| C6997_RS18045 () | 3316101..3317336 | - | 1236 | WP_000040851.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C6997_RS18050 () | 3317338..3317553 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| C6997_RS18055 () | 3317653..3317841 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 3317657..3317835 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3317657..3317835 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3317657..3317835 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3317657..3317835 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| C6997_RS18060 () | 3317879..3318028 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C6997_RS18065 () | 3318084..3318893 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| C6997_RS18070 () | 3318886..3321486 | - | 2601 | WP_000105150.1 | exodeoxyribonuclease VIII | - |
| C6997_RS18075 () | 3321588..3321863 | - | 276 | WP_000632297.1 | protein RacC | - |
| C6997_RS18080 () | 3321938..3322108 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| C6997_RS18085 () | 3322108..3322329 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| C6997_RS18090 () | 3322750..3322902 | - | 153 | WP_001427316.1 | DUF1391 family protein | - |
| C6997_RS18100 () | 3323201..3323620 | - | 420 | WP_000233320.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS18105 () | 3323700..3323954 | + | 255 | WP_001072343.1 | hypothetical protein | - |
| C6997_RS18110 () | 3323951..3324373 | + | 423 | WP_000693802.1 | hypothetical protein | - |
| C6997_RS18115 () | 3324386..3325241 | + | 856 | Protein_3265 | DUF1376 domain-containing protein | - |
| C6997_RS18120 () | 3325248..3325994 | + | 747 | WP_000788968.1 | ATP-binding protein | - |
| C6997_RS18125 () | 3326017..3326778 | + | 762 | WP_000450674.1 | DUF1627 domain-containing protein | - |
| C6997_RS18130 () | 3326794..3327216 | + | 423 | WP_001151124.1 | DUF977 family protein | - |
| C6997_RS18135 () | 3327213..3327509 | + | 297 | WP_001266134.1 | DUF4406 domain-containing protein | - |
| C6997_RS18140 () | 3327506..3327967 | + | 462 | WP_001209480.1 | ead/Ea22-like family protein | - |
| C6997_RS18145 () | 3327945..3328301 | + | 357 | WP_000403777.1 | hypothetical protein | - |
| C6997_RS18150 () | 3328352..3328564 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| C6997_RS18155 () | 3328597..3328814 | + | 218 | Protein_3273 | DUF4014 family protein | - |
| C6997_RS18160 () | 3328816..3329079 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| C6997_RS18165 () | 3329090..3329959 | + | 870 | WP_000207986.1 | DUF551 domain-containing protein | - |
| C6997_RS18170 () | 3330075..3330179 | + | 105 | WP_001278454.1 | hypothetical protein | - |
| C6997_RS18180 () | 3330426..3330581 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6997_RS18190 () | 3330749..3331027 | + | 279 | WP_001341382.1 | hypothetical protein | - |
| C6997_RS18195 () | 3331029..3332078 | + | 1050 | WP_001265060.1 | DUF968 domain-containing protein | - |
| C6997_RS18200 () | 3332091..3332465 | + | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6997_RS18205 () | 3332462..3333283 | + | 822 | WP_000762928.1 | antitermination protein | - |
| C6997_RS18210 () | 3333521..3333883 | + | 363 | Protein_3282 | tellurite resistance TerB family protein | - |
| C6997_RS18215 () | 3333880..3334132 | + | 253 | Protein_3283 | DUF3927 family protein | - |
| C6997_RS18220 () | 3334454..3336304 | + | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| C6997_RS18230 () | 3336743..3336958 | + | 216 | WP_024164617.1 | class II holin family protein | - |
| C6997_RS18235 () | 3336958..3337455 | + | 498 | WP_000075132.1 | lysozyme RrrD | - |
| C6997_RS18240 () | 3337452..3337889 | + | 438 | WP_000092325.1 | lysis protein | - |
| C6997_RS18245 () | 3338039..3338656 | + | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| C6997_RS18255 () | 3338844..3339038 | - | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| C6997_RS18265 () | 3339427..3339972 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| C6997_RS18270 () | 3339947..3341872 | + | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| C6997_RS18275 () | 3341869..3342075 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C6997_RS18280 () | 3342072..3343673 | + | 1602 | WP_001443752.1 | phage portal protein | - |
| C6997_RS18285 () | 3343654..3344973 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| C6997_RS18290 () | 3344983..3345315 | + | 333 | WP_001365129.1 | head decoration protein | - |
| C6997_RS18295 () | 3345371..3346396 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| C6997_RS18300 () | 3346438..3346833 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| C6997_RS18305 () | 3346845..3347198 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| C6997_RS18310 () | 3347210..3347788 | + | 579 | WP_000975096.1 | phage tail protein | - |
| C6997_RS18315 () | 3347785..3348180 | + | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| C6997_RS18320 () | 3348188..3348940 | + | 753 | WP_032325228.1 | phage tail protein | - |
| C6997_RS18325 () | 3348954..3349385 | + | 432 | WP_000479086.1 | phage minor tail protein G | - |
| C6997_RS18330 () | 3349412..3349825 | + | 414 | WP_000533431.1 | phage tail assembly protein T | - |
| C6997_RS18335 () | 3349806..3352385 | + | 2580 | WP_000082320.1 | phage tail tape measure protein | - |
| C6997_RS18340 () | 3352382..3352711 | + | 330 | WP_000847304.1 | phage tail protein | - |
| C6997_RS18345 () | 3352711..3353409 | + | 699 | WP_001375577.1 | phage minor tail protein L | - |
| C6997_RS18350 () | 3353415..3354158 | + | 744 | WP_001375575.1 | C40 family peptidase | - |
| C6997_RS18355 () | 3354104..3354735 | + | 632 | Protein_3308 | tail assembly protein | - |
| C6997_RS18360 () | 3354981..3358457 | + | 3477 | WP_106918344.1 | host specificity protein J | - |
| C6997_RS18365 () | 3358524..3359123 | + | 600 | WP_001230496.1 | hypothetical protein | VF |
| C6997_RS18370 () | 3359188..3360501 | + | 1314 | WP_032284465.1 | ISNCY family transposase KIS | Transposase |
| C6997_RS18375 () | 3360503..3360772 | + | 270 | WP_001023998.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6997_RS18385 () | 3361175..3362188 | + | 1014 | WP_122993102.1 | hypothetical protein | VF |
| C6997_RS18395 () | 3363850..3364068 | - | 219 | WP_032208666.1 | DinI-like family protein | - |
| C6997_RS18400 () | 3364200..3365483 | + | 1284 | Protein_3316 | MHS family MFS transporter YdfJ | - |
| C6997_RS18405 () | 3365572..3367032 | + | 1461 | WP_000527750.1 | mannitol dehydrogenase family protein | - |
| C6997_RS18410 () | 3367068..3367271 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C6997_RS18415 () | 3367449..3368135 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C6997_RS18420 () | 3368224..3368970 | - | 747 | WP_000636571.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| C6997_RS18430 () | 3369107..3371152 | + | 2046 | WP_001341522.1 | peptidyl-dipeptidase Dcp | - |
| C6997_RS18440 () | 3371197..3371715 | - | 519 | WP_001024559.1 | 2-oxo-tetronate isomerase | - |
| C6997_RS18445 () | 3371991..3372383 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| C6997_RS18450 () | 3372638..3373249 | + | 612 | Protein_3324 | diguanylate cyclase DgcZ | - |
| C6997_RS18455 () | 3373304..3374001 | + | 698 | Protein_3325 | IS1 family transposase | - |
| C6997_RS18460 () | 3374014..3374304 | + | 291 | Protein_3326 | diguanylate cyclase DgcZ | - |
| C6997_RS31825 () | 3374419..3374523 | - | 105 | WP_211180496.1 | protein MgtT | - |
| C6997_RS18465 () | 3374523..3374618 | - | 96 | WP_000901367.1 | protein MgtS | - |
| C6997_RS18470 () | 3374745..3375932 | - | 1188 | WP_001054196.1 | efflux MFS transporter YdeE | - |
| C6997_RS18475 () | 3376127..3377026 | + | 900 | WP_000087216.1 | O-acetylserine/cysteine exporter | - |
| C6997_RS18480 () | 3377071..3377769 | - | 699 | WP_000577179.1 | GntR family transcriptional regulator | - |
| C6997_RS18485 () | 3377968..3378279 | + | 312 | WP_000722571.1 | PTS sugar transporter subunit IIB | - |
| C6997_RS18490 () | 3378394..3379716 | + | 1323 | WP_001375402.1 | PTS sugar transporter subunit IIC | - |
| C6997_RS18495 () | 3379744..3380055 | + | 312 | WP_001296721.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| C6997_RS18500 () | 3380111..3381784 | + | 1674 | WP_001022772.1 | carbohydrate porin | - |
| C6997_RS18505 () | 3381809..3383248 | + | 1440 | WP_000012618.1 | 6-phospho-beta-glucosidase | - |
| C6997_RS18510 () | 3383305..3383523 | - | 219 | WP_000803659.1 | multiple antibiotic resistance protein MarB | - |
| C6997_RS18515 () | 3383555..3383938 | - | 384 | WP_106918345.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| C6997_RS18520 () | 3383958..3384392 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|