MGE detailed information
MGE type: Prophage MGE length: 96143 bp
Accession: NZ_CP027577 Location: 2947403..3043545 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Accession: NZ_CP027577 Location: 2947403..3043545 Organism: Escherichia coli strain 2013C-4225 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6997_RS15720 () | 2943310..2944509 | + | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| C6997_RS15725 () | 2944502..2945203 | + | 702 | WP_001033694.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| C6997_RS15730 () | 2945203..2946447 | + | 1245 | WP_001251348.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| C6997_RS15735 () | 2946476..2947387 | + | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| C6997_RS15740 () | 2947403..2948224 | + | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| C6997_RS15745 () | 2948363..2949150 | - | 788 | Protein_2833 | TPM domain-containing protein | - |
| C6997_RS15750 () | 2949147..2949608 | - | 462 | WP_001341497.1 | DUF3592 domain-containing protein | - |
| C6997_RS15755 () | 2949666..2950712 | - | 1047 | WP_000759317.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| C6997_RS15760 () | 2950709..2951503 | - | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| C6997_RS15765 () | 2951812..2952015 | + | 204 | WP_000824186.1 | hypothetical protein | - |
| C6997_RS15770 () | 2952116..2952460 | + | 345 | WP_001427255.1 | DUF2335 domain-containing protein | - |
| C6997_RS15775 () | 2952537..2953655 | - | 1119 | WP_000074973.1 | hypothetical protein ; Integrase | Integrase |
| C6997_RS15780 () | 2953624..2953893 | - | 270 | WP_000003742.1 | excisionase | - |
| C6997_RS15785 () | 2953955..2956361 | - | 2407 | Protein_2841 | 3'-5' exoribonuclease | - |
| C6997_RS15790 () | 2956455..2956646 | - | 192 | WP_001365098.1 | lysis protein YdfD | - |
| C6997_RS15795 () | 2956643..2956831 | - | 189 | WP_001358566.1 | cell division inhibition protein DicB | - |
| C6997_RS15805 () | 2957321..2957473 | - | 153 | WP_000379610.1 | DUF1391 family protein | - |
| C6997_RS15810 () | 2957792..2958268 | - | 477 | WP_000948454.1 | hypothetical protein | - |
| C6997_RS15815 () | 2958393..2958716 | + | 324 | WP_000711018.1 | transcriptional regulator | - |
| C6997_RS15820 () | 2958700..2959125 | + | 426 | WP_000693928.1 | Rha family transcriptional regulator | - |
| C6997_RS15825 () | 2959197..2960267 | + | 1071 | WP_001262372.1 | hypothetical protein | - |
| C6997_RS15830 () | 2960274..2961020 | + | 747 | WP_000788759.1 | ATP-binding protein | - |
| C6997_RS15835 () | 2961042..2961803 | + | 762 | WP_000451006.1 | DUF1627 domain-containing protein | - |
| C6997_RS15840 () | 2961836..2962117 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C6997_RS15845 () | 2962114..2962341 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C6997_RS15850 () | 2962334..2962669 | + | 336 | WP_001365112.1 | hypothetical protein | - |
| C6997_RS15855 () | 2962772..2962990 | + | 219 | WP_000683607.1 | DUF4014 family protein | - |
| C6997_RS15860 () | 2962992..2963549 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C6997_RS15865 () | 2963840..2963995 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6997_RS15870 () | 2964115..2964459 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6997_RS15875 () | 2964581..2964853 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C6997_RS15880 () | 2964855..2965904 | + | 1050 | WP_001265236.1 | DUF968 domain-containing protein | - |
| C6997_RS15885 () | 2965917..2966291 | + | 375 | WP_001217410.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6997_RS15890 () | 2966288..2967109 | + | 822 | WP_000762928.1 | antitermination protein | - |
| C6997_RS15905 () | 2967675..2968106 | + | 432 | WP_001427258.1 | tellurite resistance TerB family protein | - |
| C6997_RS15910 () | 2968103..2968358 | + | 256 | Protein_2863 | DUF3927 family protein | - |
| C6997_RS15915 () | 2968677..2968781 | + | 105 | Protein_2864 | DUF1737 domain-containing protein | - |
| C6997_RS15920 () | 2968923..2969942 | - | 1020 | WP_001299351.1 | hypothetical protein ; Integrase | Integrase |
| C6997_RS15925 () | 2969920..2970162 | - | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| C6997_RS15930 () | 2970230..2972701 | - | 2472 | WP_032317593.1 | exonuclease | - |
| C6997_RS15935 () | 2972795..2972986 | - | 192 | WP_001098307.1 | DUF1482 family protein | - |
| C6997_RS15940 () | 2972983..2973171 | - | 189 | WP_000413705.1 | cell division inhibition protein DicB | - |
| C6997_RS15950 () | 2973745..2973930 | + | 186 | WP_001133046.1 | hypothetical protein | - |
| C6997_RS15955 () | 2974117..2974506 | - | 390 | WP_000394511.1 | hypothetical protein | - |
| C6997_RS15965 () | 2974648..2974803 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C6997_RS15970 () | 2975080..2975367 | - | 288 | WP_001303876.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6997_RS15975 () | 2975367..2975558 | - | 192 | WP_000536233.1 | hypothetical protein | Antitoxin Detail |
| C6997_RS15980 () | 2975586..2975987 | - | 402 | WP_000986592.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS15985 () | 2976096..2976368 | + | 273 | WP_000887453.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS15990 () | 2976352..2976777 | + | 426 | WP_000693855.1 | Rha family transcriptional regulator | - |
| C6997_RS15995 () | 2976983..2977438 | - | 456 | WP_000273724.1 | hypothetical protein | - |
| C6997_RS16000 () | 2977517..2978608 | + | 1092 | WP_077756695.1 | DNA-binding protein | - |
| C6997_RS16005 () | 2978615..2979361 | + | 747 | WP_000788750.1 | ATP-binding protein | - |
| C6997_RS16010 () | 2979383..2980153 | + | 771 | WP_000450992.1 | DUF1627 domain-containing protein | - |
| C6997_RS16015 () | 2980169..2980582 | + | 414 | WP_001151233.1 | DUF977 family protein | - |
| C6997_RS16020 () | 2980934..2981707 | - | 774 | WP_000160654.1 | alpha/beta hydrolase | - |
| C6997_RS16025 () | 2982312..2982467 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6997_RS16030 () | 2982635..2982913 | + | 279 | WP_001341388.1 | hypothetical protein | - |
| C6997_RS16035 () | 2982915..2983964 | + | 1050 | WP_001265140.1 | DUF968 domain-containing protein | - |
| C6997_RS16040 () | 2983977..2984348 | + | 372 | WP_001217436.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6997_RS16045 () | 2984338..2984709 | + | 372 | WP_000090264.1 | antitermination protein | - |
| C6997_RS16050 () | 2984861..2985679 | + | 819 | WP_000265267.1 | CPBP family intramembrane metalloprotease | - |
| C6997_RS16055 () | 2985966..2986162 | + | 197 | Protein_2890 | TrmB family transcriptional regulator | - |
| C6997_RS16060 () | 2986300..2987013 | + | 714 | WP_000261909.1 | helix-turn-helix domain-containing protein | - |
| C6997_RS16085 () | 2987781..2989631 | + | 1851 | WP_000874393.1 | SASA family carbohydrate esterase | - |
| C6997_RS16095 () | 2990070..2990285 | + | 216 | WP_024182511.1 | class II holin family protein | - |
| C6997_RS16105 () | 2990541..2990813 | - | 273 | WP_000138558.1 | hypothetical protein | - |
| C6997_RS16115 () | 2990973..2991506 | + | 534 | WP_001003120.1 | lysozyme | - |
| C6997_RS16125 () | 2992061..2992147 | + | 87 | WP_032140280.1 | hypothetical protein | - |
| C6997_RS16130 () | 2992149..2992643 | + | 495 | WP_001427182.1 | lysis protein | - |
| C6997_RS16135 () | 2992640..2992864 | + | 225 | WP_000736096.1 | hypothetical protein | - |
| C6997_RS16140 () | 2993233..2993460 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C6997_RS16145 () | 2993502..2993867 | + | 366 | WP_001427183.1 | HNH endonuclease | - |
| C6997_RS16155 () | 2994161..2994310 | + | 150 | Protein_2901 | terminase small subunit | - |
| C6997_RS16160 () | 2994365..2995042 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS16165 () | 2995042..2995389 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS16170 () | 2995409..2996980 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| C6997_RS16175 () | 2997012..2997431 | + | 420 | Protein_2905 | terminase small subunit | - |
| C6997_RS16180 () | 2997428..2999089 | + | 1662 | WP_103951664.1 | terminase large subunit | - |
| C6997_RS16185 () | 2999153..3001090 | + | 1938 | WP_044165196.1 | phage major capsid protein | - |
| C6997_RS16190 () | 3001135..3001356 | + | 222 | WP_001063096.1 | hypothetical protein | - |
| C6997_RS16195 () | 3001302..3003886 | + | 2585 | Protein_2909 | phage portal protein | - |
| C6997_RS16200 () | 3003883..3004209 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| C6997_RS16205 () | 3004219..3004569 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C6997_RS16210 () | 3004566..3005012 | + | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| C6997_RS16215 () | 3005009..3005353 | + | 345 | WP_000133393.1 | DUF3168 domain-containing protein | - |
| C6997_RS16220 () | 3005419..3006135 | + | 717 | WP_032244183.1 | immunoglobulin domain-containing protein | - |
| C6997_RS16225 () | 3006150..3006524 | + | 375 | WP_000710949.1 | phage tail assembly chaperone | - |
| C6997_RS16230 () | 3006620..3006829 | + | 210 | WP_001513217.1 | DUF4035 domain-containing protein | - |
| C6997_RS16235 () | 3006877..3010119 | + | 3243 | WP_106918336.1 | phage tail tape measure protein | - |
| C6997_RS16240 () | 3010112..3010453 | + | 342 | WP_000807964.1 | phage tail protein | - |
| C6997_RS16245 () | 3010453..3011151 | + | 699 | WP_001357740.1 | phage minor tail protein L | - |
| C6997_RS16250 () | 3011157..3011900 | + | 744 | WP_025404499.1 | C40 family peptidase | - |
| C6997_RS16255 () | 3011846..3012475 | + | 630 | WP_064761467.1 | tail assembly protein | - |
| C6997_RS16260 () | 3012721..3016197 | + | 3477 | WP_106918337.1 | host specificity protein J | - |
| C6997_RS16265 () | 3016266..3016889 | + | 624 | WP_001216290.1 | hypothetical protein | VF |
| C6997_RS16270 () | 3016955..3018277 | + | 1323 | WP_106918338.1 | ISNCY family transposase KIS | Transposase |
| C6997_RS16275 () | 3018279..3018548 | + | 270 | WP_001023435.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6997_RS16280 () | 3018662..3019237 | + | 576 | WP_001131642.1 | hypothetical protein | VF |
| C6997_RS16285 () | 3019528..3020109 | + | 582 | WP_001118085.1 | hypothetical protein | VF |
| C6997_RS16290 () | 3020177..3020812 | + | 636 | WP_012816780.1 | hypothetical protein | VF |
| C6997_RS16295 () | 3020940..3021998 | - | 1059 | WP_001299273.1 | hypothetical protein | VF |
| C6997_RS16300 () | 3022073..3022723 | - | 651 | WP_001144080.1 | hypothetical protein | VF |
| C6997_RS16305 () | 3022906..3023496 | + | 591 | WP_001132165.1 | hypothetical protein | VF |
| C6997_RS16315 () | 3023770..3024633 | - | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| C6997_RS16320 () | 3024617..3025753 | - | 1137 | WP_000531601.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C6997_RS16330 () | 3026003..3027232 | + | 1230 | WP_000359438.1 | peptidase T | - |
| C6997_RS16335 () | 3027378..3028499 | - | 1122 | WP_000456506.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| C6997_RS16340 () | 3028748..3029977 | + | 1230 | WP_000085269.1 | Prophage integrase IntS ; Integrase | Integrase |
| C6997_RS16345 () | 3030342..3030530 | + | 189 | WP_000953274.1 | AlpA family transcriptional regulator | - |
| C6997_RS16350 () | 3030583..3031860 | + | 1278 | WP_001502337.1 | host cell division inhibitor Icd-like protein | - |
| C6997_RS16355 () | 3031857..3032087 | + | 231 | WP_000076671.1 | hypothetical protein | - |
| C6997_RS16360 () | 3032077..3032301 | + | 225 | WP_000336141.1 | hypothetical protein | - |
| C6997_RS16365 () | 3032294..3032659 | + | 366 | WP_000551751.1 | hypothetical protein | - |
| C6997_RS16370 () | 3032652..3032873 | + | 222 | WP_001204070.1 | hypothetical protein | - |
| C6997_RS16375 () | 3032875..3033108 | + | 234 | WP_001204967.1 | hypothetical protein | - |
| C6997_RS16380 () | 3033114..3033413 | + | 300 | WP_000770163.1 | DUF4222 domain-containing protein | - |
| C6997_RS16385 () | 3033410..3034807 | + | 1398 | WP_000833614.1 | helicase RepA family protein | - |
| C6997_RS16395 () | 3035010..3035261 | + | 252 | WP_001080642.1 | hypothetical protein | - |
| C6997_RS31585 () | 3035258..3035563 | + | 306 | WP_001294169.1 | hypothetical protein | - |
| C6997_RS16405 () | 3035573..3035983 | + | 411 | WP_000126670.1 | single-stranded DNA-binding protein | - |
| C6997_RS16410 () | 3035996..3036268 | + | 273 | WP_000233311.1 | PerC family transcriptional regulator | - |
| C6997_RS16420 () | 3036394..3036618 | + | 225 | WP_001132080.1 | hypothetical protein | - |
| C6997_RS16425 () | 3036910..3038067 | + | 1158 | WP_001137338.1 | phage major capsid protein | - |
| C6997_RS16430 () | 3038107..3038679 | + | 573 | WP_000504047.1 | HK97 family phage prohead protease | - |
| C6997_RS16435 () | 3038681..3039892 | + | 1212 | WP_000267608.1 | phage portal protein | - |
| C6997_RS16440 () | 3039889..3040227 | + | 339 | WP_001020669.1 | phage head closure protein | - |
| C6997_RS16445 () | 3040224..3040520 | + | 297 | WP_000134114.1 | head-tail connector protein | - |
| C6997_RS16450 () | 3040520..3040960 | + | 441 | WP_001145906.1 | HNH endonuclease | - |
| C6997_RS31590 () | 3040944..3041126 | + | 183 | WP_000174068.1 | hypothetical protein | - |
| C6997_RS16460 () | 3041249..3041605 | + | 357 | WP_000113646.1 | phage terminase small subunit P27 family | - |
| C6997_RS16465 () | 3041589..3043250 | + | 1662 | WP_000127884.1 | terminase large subunit | - |
| C6997_RS16470 () | 3043264..3043545 | + | 282 | WP_000133415.1 | hypothetical protein | - |
| C6997_RS16475 () | 3044161..3045621 | - | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| C6997_RS16480 () | 3045621..3046292 | - | 672 | WP_001265481.1 | two-component system response regulator PhoP | - |
| C6997_RS16485 () | 3046460..3047830 | - | 1371 | WP_000423729.1 | adenylosuccinate lyase | - |
| C6997_RS16490 () | 3047834..3048475 | - | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|