MGE detailed information
MGE type: Prophage MGE length: 55986 bp
Accession: NZ_CP027552 Location: 3714049..3770034 Organism: Escherichia coli strain 2015C-4498 Replicon: chromosome
Accession: NZ_CP027552 Location: 3714049..3770034 Organism: Escherichia coli strain 2015C-4498 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6953_RS19845 () | 3709614..3709760 | - | 147 | WP_001414184.1 | hypothetical protein | - |
| C6953_RS19850 () | 3710188..3710466 | + | 279 | WP_044804821.1 | hypothetical protein | - |
| C6953_RS19855 () | 3710953..3711587 | + | 635 | Protein_3602 | transposase | - |
| C6953_RS19860 () | 3711634..3712203 | - | 570 | WP_000938103.1 | T3SS effector caspase inhibitor NleF | - |
| C6953_RS19865 () | 3712269..3713180 | - | 912 | WP_000950979.1 | type III secretion system effector kinase NleH1-2 | - |
| C6953_RS19870 () | 3713287..3713409 | - | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6953_RS19875 () | 3713585..3713740 | + | 156 | WP_106884136.1 | hypothetical protein | - |
| C6953_RS19880 () | 3713737..3714024 | + | 288 | Protein_3607 | tyrosine-type recombinase/integrase | - |
| C6953_RS19885 () | 3714049..3715362 | - | 1314 | WP_106884137.1 | ISNCY family transposase KIS | Transposase |
| C6953_RS19890 () | 3715514..3716113 | - | 600 | WP_001228290.1 | hypothetical protein | VF |
| C6953_RS19895 () | 3716181..3719654 | - | 3474 | WP_106884138.1 | host specificity protein J | - |
| C6953_RS19900 () | 3719895..3720524 | - | 630 | WP_159028792.1 | tail assembly protein | - |
| C6953_RS19905 () | 3720470..3721212 | - | 743 | Protein_3612 | C40 family peptidase | - |
| C6953_RS19910 () | 3721218..3721916 | - | 699 | WP_101972849.1 | phage minor tail protein L | - |
| C6953_RS19915 () | 3721916..3722257 | - | 342 | WP_000807954.1 | phage tail protein | - |
| C6953_RS19920 () | 3722250..3725493 | - | 3244 | Protein_3615 | phage tail tape measure protein | - |
| C6953_RS19925 () | 3725545..3725754 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C6953_RS19930 () | 3725850..3726224 | - | 375 | WP_001030047.1 | phage tail assembly chaperone | - |
| C6953_RS19935 () | 3726230..3726946 | - | 717 | WP_106883934.1 | immunoglobulin domain-containing protein | - |
| C6953_RS19940 () | 3727013..3727357 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C6953_RS19945 () | 3727354..3727800 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C6953_RS19950 () | 3727797..3728147 | - | 351 | WP_106884139.1 | head-tail adaptor protein | - |
| C6953_RS19955 () | 3728157..3728483 | - | 327 | WP_106884140.1 | head-tail connector protein | - |
| C6953_RS19960 () | 3728480..3730901 | - | 2422 | Protein_3623 | phage portal protein | - |
| C6953_RS19965 () | 3730847..3731068 | - | 222 | WP_001063023.1 | hypothetical protein | - |
| C6953_RS19970 () | 3731113..3733050 | - | 1938 | WP_106884141.1 | phage major capsid protein | - |
| C6953_RS19975 () | 3733114..3734775 | - | 1662 | WP_106884142.1 | terminase large subunit | - |
| C6953_RS19980 () | 3734772..3735335 | - | 564 | WP_000958416.1 | terminase small subunit | - |
| C6953_RS19985 () | 3735451..3735979 | - | 529 | Protein_3628 | HNH endonuclease | - |
| C6953_RS19990 () | 3736021..3736206 | + | 186 | WP_001302977.1 | DUF3950 domain-containing protein | - |
| C6953_RS19995 () | 3736336..3736476 | - | 141 | WP_000347013.1 | hypothetical protein | - |
| C6953_RS20005 () | 3736833..3737057 | - | 225 | WP_000735655.1 | hypothetical protein | - |
| C6953_RS29860 () | 3737122..3737328 | - | 207 | WP_001208682.1 | Rz1 family lipoprotein | - |
| C6953_RS29870 () | 3737556..3737702 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| C6953_RS20015 () | 3737702..3738271 | - | 570 | WP_106884143.1 | hypothetical protein | - |
| C6953_RS20020 () | 3738542..3739075 | - | 534 | WP_106884144.1 | lysozyme | - |
| C6953_RS20025 () | 3739126..3739470 | - | 345 | WP_000731241.1 | YdfR family protein | - |
| C6953_RS20030 () | 3739475..3739690 | - | 216 | WP_000284517.1 | class II holin family protein | - |
| C6953_RS20035 () | 3739840..3741693 | - | 1854 | WP_106884145.1 | SASA family carbohydrate esterase | - |
| C6953_RS20045 () | 3741920..3742175 | - | 256 | Protein_3639 | DUF3927 family protein | - |
| C6953_RS20050 () | 3742172..3742600 | - | 429 | Protein_3640 | tellurite resistance TerB family protein | - |
| C6953_RS20070 () | 3743052..3743765 | - | 714 | WP_000301785.1 | helix-turn-helix domain-containing protein | - |
| C6953_RS20075 () | 3743900..3744097 | - | 198 | WP_001369585.1 | hypothetical protein | - |
| C6953_RS20080 () | 3744340..3744921 | - | 582 | WP_000211416.1 | ORF6N domain-containing protein | - |
| C6953_RS20085 () | 3745195..3745749 | - | 555 | WP_000640148.1 | DUF1133 family protein | - |
| C6953_RS20090 () | 3745746..3746036 | - | 291 | WP_000228019.1 | DUF1364 domain-containing protein | - |
| C6953_RS20095 () | 3746036..3746635 | - | 600 | WP_000940348.1 | DUF1367 family protein | - |
| C6953_RS30160 () | 3746695..3746868 | - | 174 | WP_000687443.1 | hypothetical protein | - |
| C6953_RS20100 () | 3747121..3747276 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6953_RS20110 () | 3747522..3747626 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| C6953_RS20115 () | 3747742..3748281 | - | 540 | Protein_3650 | DUF551 domain-containing protein | - |
| C6953_RS20120 () | 3748528..3748998 | - | 471 | Protein_3651 | DUF551 domain-containing protein | - |
| C6953_RS20125 () | 3749166..3749357 | - | 192 | WP_001014289.1 | hypothetical protein | - |
| C6953_RS20130 () | 3749359..3749826 | - | 468 | WP_044805253.1 | hypothetical protein | - |
| C6953_RS20135 () | 3749973..3750446 | - | 474 | WP_044805254.1 | class I SAM-dependent methyltransferase | - |
| C6953_RS20140 () | 3750443..3750865 | - | 423 | WP_044805255.1 | DUF977 family protein | - |
| C6953_RS20145 () | 3750881..3751642 | - | 762 | WP_044805256.1 | DUF1627 domain-containing protein | - |
| C6953_RS20150 () | 3751665..3752411 | - | 747 | WP_044805258.1 | ATP-binding protein | - |
| C6953_RS20155 () | 3752418..3753200 | - | 783 | WP_044805259.1 | hypothetical protein | - |
| C6953_RS20160 () | 3753278..3753700 | - | 423 | WP_044805260.1 | hypothetical protein | - |
| C6953_RS20165 () | 3753697..3753939 | - | 243 | WP_001033914.1 | helix-turn-helix domain-containing protein | - |
| C6953_RS20170 () | 3754036..3754455 | + | 420 | WP_000410105.1 | helix-turn-helix domain-containing protein | - |
| C6953_RS20175 () | 3754762..3754914 | + | 153 | WP_000379547.1 | DUF1391 family protein | - |
| C6953_RS20180 () | 3755335..3755556 | + | 222 | WP_000560219.1 | cell division protein FtsZ | - |
| C6953_RS20185 () | 3755556..3755726 | + | 171 | WP_000358365.1 | hypothetical protein | - |
| C6953_RS20190 () | 3755801..3756076 | + | 276 | WP_044805262.1 | hypothetical protein | - |
| C6953_RS20195 () | 3756177..3759326 | + | 3150 | WP_096317506.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| C6953_RS20200 () | 3759338..3760390 | + | 1053 | Protein_3667 | recombinase RecT | - |
| C6953_RS20205 () | 3760454..3760648 | + | 195 | WP_010989194.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6953_RS20210 () | 3760641..3760829 | + | 189 | WP_024177035.1 | DUF1187 family protein | - |
| - () | 3760647..3760825 | - | 179 | NuclAT_0 | - | - |
| - () | 3760647..3760825 | - | 179 | NuclAT_0 | - | - |
| - () | 3760647..3760825 | - | 179 | NuclAT_0 | - | - |
| - () | 3760647..3760825 | - | 179 | NuclAT_0 | - | - |
| C6953_RS20215 () | 3760936..3761217 | + | 282 | WP_005127484.1 | excisionase | - |
| C6953_RS20220 () | 3761183..3762259 | + | 1077 | WP_001189085.1 | hypothetical protein ; Integrase | Integrase |
| - () | 3762390..3762624 | + | 235 | - | - | Antitoxin Detail |
| - () | 3762391..3762494 | - | 104 | - | - | Toxin Detail |
| C6953_RS20225 () | 3762652..3762993 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6953_RS20230 () | 3763006..3763878 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6953_RS20235 () | 3763882..3764256 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6953_RS20240 () | 3764395..3764625 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6953_RS20245 () | 3764727..3765383 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6953_RS20250 () | 3765407..3766069 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6953_RS20255 () | 3766066..3768126 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| C6953_RS20260 () | 3768335..3768994 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6953_RS20265 () | 3769321..3769677 | - | 357 | WP_001295500.1 | protein YebF | - |
| C6953_RS20270 () | 3769744..3770034 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6953_RS20275 () | 3770168..3771346 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6953_RS20280 () | 3771402..3772043 | - | 642 | WP_106884146.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6953_RS20285 () | 3772080..3773891 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|