MGE detailed information
MGE type: Prophage MGE length: 54839 bp
Accession: NZ_CP027548 Location: 1382319..1437157 Organism: Escherichia coli strain 2014C-3061 Replicon: chromosome
Accession: NZ_CP027548 Location: 1382319..1437157 Organism: Escherichia coli strain 2014C-3061 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6992_RS07385 () | 1378402..1379043 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6992_RS07390 () | 1379099..1380277 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6992_RS07395 () | 1380411..1380701 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6992_RS07400 () | 1380768..1381124 | + | 357 | WP_001397206.1 | protein YebF | - |
| C6992_RS07405 () | 1381451..1382110 | + | 660 | WP_000024759.1 | tellurite resistance TerB family protein | - |
| C6992_RS07410 () | 1382319..1384377 | + | 2059 | Protein_1357 | oligopeptidase B | - |
| C6992_RS07415 () | 1384374..1385036 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6992_RS07420 () | 1385060..1385716 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| C6992_RS07425 () | 1385818..1386048 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6992_RS07430 () | 1386187..1386561 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C6992_RS07435 () | 1386565..1387436 | + | 872 | Protein_1362 | copper homeostasis membrane protein CopD | - |
| C6992_RS07440 () | 1387449..1387790 | + | 342 | WP_000976476.1 | YebY family protein | - |
| C6992_RS07445 () | 1388183..1389259 | - | 1077 | WP_001189081.1 | hypothetical protein ; Integrase | Integrase |
| C6992_RS07450 () | 1389225..1389506 | - | 282 | WP_001311878.1 | excisionase | - |
| C6992_RS07455 () | 1389613..1389801 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1389617..1389795 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1389617..1389795 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1389617..1389795 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1389617..1389795 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| C6992_RS07460 () | 1389794..1389988 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C6992_RS07465 () | 1390045..1390854 | - | 810 | WP_000166311.1 | recombination protein RecT | - |
| C6992_RS07470 () | 1390847..1393594 | - | 2748 | WP_106904308.1 | exodeoxyribonuclease VIII | - |
| C6992_RS07475 () | 1393695..1393972 | - | 278 | Protein_1370 | hypothetical protein | - |
| C6992_RS07480 () | 1394046..1394216 | - | 171 | WP_065336296.1 | hypothetical protein | - |
| C6992_RS07485 () | 1394216..1394437 | - | 222 | WP_000560228.1 | killing protein KilR | - |
| C6992_RS07490 () | 1394484..1395332 | - | 849 | WP_000935592.1 | Rha family phage regulatory protein | - |
| C6992_RS07495 () | 1395761..1395913 | - | 153 | WP_001169149.1 | DUF1391 family protein | - |
| C6992_RS07505 () | 1396294..1396758 | - | 465 | WP_001253182.1 | helix-turn-helix domain-containing protein | - |
| C6992_RS07510 () | 1396863..1397138 | + | 276 | WP_000171139.1 | helix-turn-helix domain-containing protein | - |
| C6992_RS07515 () | 1397122..1397544 | + | 423 | WP_000702025.1 | hypothetical protein | - |
| C6992_RS07520 () | 1397622..1398410 | + | 789 | WP_001428773.1 | hypothetical protein | - |
| C6992_RS07525 () | 1398417..1399157 | + | 741 | WP_000789014.1 | IS21 family transposase ISCsa9 | Transposase |
| C6992_RS07530 () | 1399183..1399953 | + | 771 | WP_045896229.1 | DUF1627 domain-containing protein | - |
| C6992_RS07535 () | 1399969..1400364 | + | 396 | WP_001118161.1 | DUF977 family protein | - |
| C6992_RS07540 () | 1400421..1401005 | + | 585 | WP_045896225.1 | DUF551 domain-containing protein | - |
| C6992_RS07545 () | 1401121..1401225 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C6992_RS07555 () | 1401471..1401626 | + | 156 | WP_000813260.1 | type I toxin-antitoxin system toxin HokD | - |
| C6992_RS29450 () | 1401847..1402020 | + | 174 | WP_000687438.1 | hypothetical protein | - |
| C6992_RS07560 () | 1402080..1402679 | + | 600 | WP_000940345.1 | DUF1367 family protein | - |
| C6992_RS07565 () | 1402679..1402969 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C6992_RS07570 () | 1402966..1403520 | + | 555 | WP_000640150.1 | DUF1133 family protein | - |
| C6992_RS07575 () | 1403794..1404351 | + | 558 | WP_024222756.1 | ORF6N domain-containing protein | - |
| C6992_RS07590 () | 1405065..1407011 | + | 1947 | WP_032313455.1 | DUF1737 domain-containing protein | - |
| C6992_RS07595 () | 1407148..1407327 | + | 180 | WP_000142777.1 | DUF1378 family protein | - |
| C6992_RS07600 () | 1407368..1407613 | + | 246 | WP_001290233.1 | DUF826 domain-containing protein | - |
| C6992_RS07605 () | 1407690..1407905 | + | 216 | WP_000284506.1 | class II holin family protein | - |
| C6992_RS07610 () | 1407910..1408443 | + | 534 | WP_000087730.1 | lysozyme | - |
| C6992_RS07615 () | 1408714..1409283 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C6992_RS29125 () | 1409283..1409429 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C6992_RS29135 () | 1409657..1409842 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C6992_RS07630 () | 1410360..1410836 | + | 477 | WP_000348565.1 | DUF1441 family protein | - |
| C6992_RS07635 () | 1410833..1412956 | + | 2124 | WP_001077625.1 | phage terminase large subunit family protein | - |
| C6992_RS07640 () | 1412953..1413165 | + | 213 | WP_000102415.1 | hypothetical protein | - |
| C6992_RS07645 () | 1413165..1414667 | + | 1503 | WP_000974564.1 | phage portal protein | - |
| C6992_RS29455 () | 1414612..1416635 | + | 2024 | Protein_1402 | ATP-dependent Clp protease proteolytic subunit | VF |
| C6992_RS07660 () | 1416723..1417049 | + | 327 | WP_001097065.1 | DUF2190 family protein | - |
| C6992_RS07665 () | 1417042..1417323 | + | 282 | WP_001281347.1 | DNA breaking-rejoining protein | - |
| C6992_RS07670 () | 1417326..1417949 | + | 624 | WP_001450644.1 | phage tail protein | - |
| C6992_RS07675 () | 1417962..1418360 | + | 399 | WP_000682716.1 | tail protein | - |
| C6992_RS07680 () | 1418368..1419120 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C6992_RS07685 () | 1419134..1419556 | + | 423 | WP_044707580.1 | phage minor tail protein G | - |
| C6992_RS07690 () | 1419583..1419891 | + | 309 | WP_000533450.1 | phage tail assembly protein T | - |
| C6992_RS07695 () | 1419935..1422580 | + | 2646 | WP_106904309.1 | phage tail tape measure protein | - |
| C6992_RS07700 () | 1422577..1422906 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C6992_RS07705 () | 1422906..1423604 | + | 699 | WP_024236480.1 | phage minor tail protein L | - |
| C6992_RS07710 () | 1423610..1424353 | + | 744 | WP_001443526.1 | C40 family peptidase | - |
| C6992_RS07715 () | 1424299..1424931 | + | 633 | WP_159030175.1 | tail assembly protein | - |
| C6992_RS07720 () | 1425179..1428654 | + | 3476 | Protein_1415 | host specificity protein J | - |
| C6992_RS07725 () | 1428721..1429320 | + | 600 | WP_001230398.1 | Outer membrane protein X | VF |
| C6992_RS07730 () | 1429385..1430698 | + | 1314 | WP_106904311.1 | ISNCY family transposase KIS | Transposase |
| C6992_RS07735 () | 1430700..1430969 | + | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6992_RS07740 () | 1431698..1432354 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| C6992_RS07745 () | 1432355..1432546 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C6992_RS07750 () | 1432651..1432887 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6992_RS07755 () | 1433005..1434444 | - | 1440 | WP_001443441.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6992_RS07760 () | 1434524..1437157 | - | 2634 | WP_032314101.1 | hypothetical protein | VF |
| C6992_RS07765 () | 1437126..1438409 | - | 1284 | WP_106904312.1 | membrane integrity lipid transport subunit YebS | - |
| C6992_RS07770 () | 1438539..1439036 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C6992_RS07775 () | 1439133..1439831 | + | 699 | WP_032314102.1 | RNA chaperone ProQ | - |
| C6992_RS07780 () | 1439851..1441899 | + | 2049 | WP_001055778.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|