MGE detailed information
MGE type: Prophage MGE length: 62527 bp
Accession: NZ_CP027457 Location: 4404939..4467465 Organism: Escherichia coli strain 88-3493 Replicon: chromosome
Accession: NZ_CP027457 Location: 4404939..4467465 Organism: Escherichia coli strain 88-3493 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W79_RS22210 () | 4400683..4401870 | + | 1188 | WP_001613094.1 | efflux MFS transporter YdeE | - |
| C6W79_RS22215 () | 4401911..4402306 | - | 396 | WP_001271101.1 | rhodanese | - |
| C6W79_RS22220 () | 4402401..4403372 | + | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| C6W79_RS22225 () | 4403480..4403575 | + | 96 | WP_000901365.1 | protein MgtS | - |
| C6W79_RS26745 () | 4403575..4403679 | + | 105 | WP_211180496.1 | protein MgtT | - |
| C6W79_RS22230 () | 4403794..4404684 | - | 891 | WP_001613095.1 | diguanylate cyclase DgcZ | - |
| C6W79_RS22235 () | 4404939..4405331 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| C6W79_RS22240 () | 4405607..4406125 | + | 519 | WP_001613097.1 | 2-oxo-tetronate isomerase | - |
| C6W79_RS22250 () | 4406170..4408215 | - | 2046 | WP_001613098.1 | peptidyl-dipeptidase Dcp | - |
| C6W79_RS22255 () | 4408352..4409098 | + | 747 | WP_000636575.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| C6W79_RS22260 () | 4409187..4409873 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C6W79_RS22265 () | 4410050..4410253 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C6W79_RS22270 () | 4410289..4411749 | - | 1461 | WP_001613099.1 | mannitol dehydrogenase family protein | - |
| C6W79_RS22275 () | 4411839..4413206 | - | 1368 | Protein_4070 | MHS family MFS transporter | - |
| C6W79_RS26415 () | 4413727..4413840 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| C6W79_RS22280 () | 4413909..4414142 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C6W79_RS22285 () | 4414459..4415049 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C6W79_RS22290 () | 4415147..4415722 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C6W79_RS22295 () | 4415722..4418796 | - | 3075 | WP_000279080.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C6W79_RS22300 () | 4418861..4419460 | - | 600 | WP_001230375.1 | Attachment invasion locus protein | VF |
| C6W79_RS22305 () | 4419530..4423027 | - | 3498 | WP_000515714.1 | host specificity protein J | - |
| C6W79_RS22310 () | 4423088..4423720 | - | 633 | WP_000090895.1 | tail assembly protein | - |
| C6W79_RS22315 () | 4423657..4424400 | - | 744 | WP_000194783.1 | C40 family peptidase | - |
| C6W79_RS22320 () | 4424406..4425104 | - | 699 | WP_001152640.1 | phage minor tail protein L | - |
| C6W79_RS22325 () | 4425104..4425433 | - | 330 | WP_000847379.1 | phage tail protein | - |
| C6W79_RS22330 () | 4425430..4427991 | - | 2562 | WP_000840342.1 | phage tail tape measure protein | - |
| C6W79_RS22335 () | 4427984..4428418 | - | 435 | WP_000459465.1 | phage tail assembly protein T | - |
| C6W79_RS22340 () | 4428400..4428822 | - | 423 | WP_000479142.1 | phage minor tail protein G | - |
| C6W79_RS22345 () | 4428838..4429578 | - | 741 | WP_001349920.1 | phage tail protein | - |
| C6W79_RS22350 () | 4429586..4429981 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| C6W79_RS22355 () | 4429978..4430556 | - | 579 | WP_000975070.1 | phage tail protein | - |
| C6W79_RS22360 () | 4430568..4430921 | - | 354 | WP_000753007.1 | head-tail joining protein | - |
| C6W79_RS22365 () | 4430933..4431331 | - | 399 | WP_000158905.1 | DNA-packaging protein FI | - |
| C6W79_RS22370 () | 4431373..4432398 | - | 1026 | WP_000063277.1 | major capsid protein | - |
| C6W79_RS22375 () | 4432455..4432787 | - | 333 | WP_001295978.1 | head decoration protein | - |
| C6W79_RS22380 () | 4432797..4434116 | - | 1320 | WP_000123218.1 | S49 family peptidase | - |
| C6W79_RS22385 () | 4434097..4435698 | - | 1602 | WP_001581760.1 | phage portal protein | - |
| C6W79_RS22390 () | 4435695..4435901 | - | 207 | WP_000198149.1 | gpW family protein | - |
| C6W79_RS22395 () | 4435898..4437823 | - | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| C6W79_RS22400 () | 4437798..4438343 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| C6W79_RS22410 () | 4438732..4438965 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C6W79_RS22415 () | 4439023..4439433 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C6W79_RS22420 () | 4439585..4439758 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C6W79_RS26420 () | 4439930..4440085 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| C6W79_RS26425 () | 4440165..4440230 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| C6W79_RS22430 () | 4440233..4440421 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| C6W79_RS22435 () | 4440432..4440644 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C6W79_RS22440 () | 4441007..4441504 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C6W79_RS22445 () | 4441501..4442034 | - | 534 | WP_001092971.1 | lysozyme | - |
| C6W79_RS22450 () | 4442031..4442342 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| C6W79_RS22455 () | 4442347..4442562 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C6W79_RS26750 () | 4442782..4442952 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C6W79_RS22460 () | 4443316..4443531 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C6W79_RS22465 () | 4443832..4444044 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C6W79_RS26430 () | 4444099..4444188 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| C6W79_RS22470 () | 4444466..4445218 | - | 753 | WP_001047135.1 | antitermination protein | - |
| C6W79_RS22475 () | 4445232..4446281 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| C6W79_RS22480 () | 4446283..4446561 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| C6W79_RS22485 () | 4446628..4446879 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| C6W79_RS22490 () | 4447096..4447251 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6W79_RS22495 () | 4447323..4447610 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C6W79_RS22500 () | 4447610..4447849 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C6W79_RS22505 () | 4447874..4448179 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| C6W79_RS22510 () | 4448382..4448714 | + | 333 | WP_001301033.1 | protein FlxA | - |
| C6W79_RS22520 () | 4449151..4450464 | - | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| C6W79_RS26605 () | 4451233..4451520 | - | 288 | Protein_4122 | hypothetical protein | - |
| C6W79_RS22535 () | 4451742..4452146 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| C6W79_RS22540 () | 4452143..4452490 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C6W79_RS22545 () | 4452539..4454074 | + | 1536 | WP_001333339.1 | IS66 family transposase ISEc22 | Transposase |
| C6W79_RS22550 () | 4454594..4454950 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| C6W79_RS22555 () | 4454947..4455369 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| C6W79_RS22560 () | 4455410..4456375 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| C6W79_RS22565 () | 4456356..4456877 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| C6W79_RS22570 () | 4456861..4457091 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C6W79_RS22575 () | 4457175..4457582 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C6W79_RS22580 () | 4457749..4457904 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C6W79_RS22590 () | 4458064..4458282 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| C6W79_RS22600 () | 4458850..4459038 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C6W79_RS22605 () | 4459035..4459226 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C6W79_RS22610 () | 4459319..4461790 | + | 2472 | WP_000048342.1 | exonuclease | - |
| C6W79_RS22615 () | 4461863..4462114 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| C6W79_RS22620 () | 4462149..4463429 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| C6W79_RS22630 () | 4463617..4464636 | - | 1020 | WP_001613128.1 | Zn-dependent oxidoreductase | - |
| C6W79_RS22635 () | 4464648..4465862 | - | 1215 | WP_001613129.1 | starvation-sensing protein RspA | - |
| C6W79_RS22640 () | 4466068..4466394 | - | 327 | WP_001613130.1 | YnfA family protein | - |
| C6W79_RS22645 () | 4466529..4466870 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| C6W79_RS22650 () | 4466905..4467465 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| C6W79_RS22655 () | 4467468..4468178 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C6W79_RS22660 () | 4468286..4468591 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| C6W79_RS22665 () | 4468790..4471216 | + | 2427 | WP_106888552.1 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|