MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 106464 bp
Accession: NZ_CP027406 Location: 1..106464 Organism: Roseobacter denitrificans strain FDAARGOS_309 Replicon: plasmid unnamed1
Accession: NZ_CP027406 Location: 1..106464 Organism: Roseobacter denitrificans strain FDAARGOS_309 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP88_RS00010 () | 693..1454 | - | 762 | WP_011655415.1 | IS21-like element helper ATPase IstB | - |
| CEP88_RS00015 () | 1453..2160 | + | 708 | WP_171960020.1 | IS6 family transposase | - |
| CEP88_RS20305 () | 3010..10665 | - | 7656 | WP_143090278.1 | iron-regulated protein frpC | - |
| CEP88_RS00025 () | 10670..11266 | - | 597 | WP_105880229.1 | hypothetical protein | - |
| CEP88_RS00030 () | 11256..11696 | - | 441 | WP_044033574.1 | hypothetical protein | - |
| CEP88_RS00040 () | 12438..13055 | + | 618 | WP_011655408.1 | hypothetical protein | - |
| CEP88_RS00045 () | 13176..14084 | + | 909 | WP_011655407.1 | tyrosine-type recombinase/integrase | - |
| CEP88_RS00050 () | 14353..16677 | + | 2325 | WP_083400223.1 | AAA family ATPase | - |
| CEP88_RS00055 () | 16968..17258 | - | 291 | WP_011655404.1 | HNH endonuclease | - |
| CEP88_RS00060 () | 17274..20333 | - | 3060 | WP_011655403.1 | AAA family ATPase | - |
| CEP88_RS00065 () | 20330..21475 | - | 1146 | WP_011655402.1 | exonuclease SbcCD subunit D | - |
| CEP88_RS00070 () | 21548..22366 | + | 819 | WP_011655401.1 | WYL domain-containing protein | - |
| CEP88_RS00075 () | 22356..22586 | + | 231 | WP_044033569.1 | WGR domain-containing protein | - |
| CEP88_RS00080 () | 22652..23887 | + | 1236 | WP_011655399.1 | nucleotidyltransferase | - |
| CEP88_RS00085 () | 23956..25629 | + | 1674 | WP_171960019.1 | ThiF family adenylyltransferase | - |
| CEP88_RS00090 () | 25607..26095 | + | 489 | WP_011655397.1 | Mov34/MPN/PAD-1 family protein | - |
| CEP88_RS00095 () | 26097..27215 | + | 1119 | WP_011655396.1 | SAVED domain-containing protein | - |
| CEP88_RS00100 () | 27205..27759 | + | 555 | WP_143090276.1 | hypothetical protein | - |
| CEP88_RS00105 () | 27898..30078 | - | 2181 | WP_011655394.1 | DEAD/DEAH box helicase | - |
| CEP88_RS00110 () | 30081..31388 | - | 1308 | WP_011655393.1 | ATP-binding protein | - |
| CEP88_RS00115 () | 31366..33912 | - | 2547 | WP_011655392.1 | TerB N-terminal domain-containing protein | - |
| CEP88_RS00120 () | 34067..34447 | - | 381 | WP_044033566.1 | DUF5615 family PIN-like protein | - |
| CEP88_RS00125 () | 34457..35056 | - | 600 | WP_050759150.1 | DUF433 domain-containing protein | - |
| CEP88_RS00130 () | 35259..35888 | - | 630 | WP_011655389.1 | SMC-Scp complex subunit ScpB | - |
| CEP88_RS00135 () | 35885..36847 | - | 963 | WP_011655388.1 | DUF1403 family protein | - |
| CEP88_RS00140 () | 36972..38186 | + | 1215 | WP_011655387.1 | tyrosine-type recombinase/integrase | - |
| CEP88_RS00145 () | 38240..38545 | + | 306 | WP_011655385.1 | hypothetical protein | - |
| CEP88_RS00150 () | 38751..39173 | - | 423 | WP_011655384.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CEP88_RS00155 () | 39170..39400 | - | 231 | WP_011655383.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CEP88_RS00160 () | 39476..40789 | - | 1314 | WP_011655382.1 | replication protein C | - |
| CEP88_RS00165 () | 41030..42052 | - | 1023 | WP_011655381.1 | ParB N-terminal domain-containing protein | - |
| CEP88_RS00170 () | 42049..43404 | - | 1356 | WP_011655380.1 | AAA family ATPase | - |
| CEP88_RS00175 () | 43602..44168 | - | 567 | WP_044033563.1 | hypothetical protein | - |
| CEP88_RS00190 () | 45280..45759 | + | 480 | WP_011655378.1 | hypothetical protein | - |
| CEP88_RS00195 () | 45810..46448 | + | 639 | WP_105880237.1 | lytic transglycosylase domain-containing protein | - |
| CEP88_RS00200 () | 46463..46717 | + | 255 | WP_105880238.1 | TrbC/VirB2 family protein | - |
| CEP88_RS00205 () | 46720..46995 | + | 276 | WP_011655375.1 | VirB3 family type IV secretion system protein | - |
| CEP88_RS00210 () | 46988..49348 | + | 2361 | WP_011655374.1 | VirB4 protein, putative | - |
| CEP88_RS00215 () | 49479..50189 | + | 711 | WP_011655373.1 | type IV secretion system protein | - |
| CEP88_RS00220 () | 50192..50647 | + | 456 | WP_011655372.1 | hypothetical protein | - |
| CEP88_RS00225 () | 50651..51823 | + | 1173 | WP_011655371.1 | type IV secretion system protein | - |
| CEP88_RS00230 () | 51887..52561 | + | 675 | WP_011655370.1 | type IV secretion system protein | - |
| CEP88_RS00235 () | 52558..53316 | + | 759 | WP_050759149.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| CEP88_RS00240 () | 53316..54647 | + | 1332 | WP_011655368.1 | TrbI/VirB10 family protein | - |
| CEP88_RS00245 () | 54644..55627 | + | 984 | WP_011655367.1 | Flp pilus assembly complex ATPase component TadA | - |
| CEP88_RS00250 () | 56008..57018 | + | 1011 | WP_011655366.1 | DUF4105 domain-containing protein | - |
| CEP88_RS00255 () | 57193..58227 | + | 1035 | WP_011655365.1 | IS481 family transposase | - |
| CEP88_RS00260 () | 58418..59929 | + | 1512 | WP_011655364.1 | BCCT family transporter | - |
| CEP88_RS00265 () | 60066..61271 | + | 1206 | WP_011655362.1 | sodium/glutamate symporter | - |
| CEP88_RS00270 () | 61279..62568 | - | 1290 | WP_011655361.1 | alpha/beta hydrolase | - |
| CEP88_RS00275 () | 63079..63663 | - | 585 | WP_074958791.1 | rhomboid family intramembrane serine protease | - |
| CEP88_RS00280 () | 63660..65825 | - | 2166 | WP_011655465.1 | type IV secretion system ATPase VirD4 | - |
| CEP88_RS00285 () | 65835..68183 | - | 2349 | WP_050759155.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CEP88_RS00290 () | 68180..68659 | - | 480 | WP_044033582.1 | T-DNA border endonuclease subunit VirD1 | - |
| CEP88_RS00295 () | 69180..69893 | + | 714 | WP_011655461.1 | conjugal transfer ATPase VirC1 | - |
| CEP88_RS00300 () | 69880..70527 | + | 648 | WP_011655460.1 | hypothetical protein | - |
| CEP88_RS00305 () | 70966..71553 | - | 588 | WP_011655458.1 | hypothetical protein | - |
| CEP88_RS00310 () | 71553..72449 | - | 897 | WP_011655457.1 | DUF1738 domain-containing protein | - |
| CEP88_RS00315 () | 73262..74038 | - | 777 | WP_105880233.1 | helix-turn-helix transcriptional regulator | - |
| CEP88_RS00325 () | 75093..75995 | + | 903 | WP_011655454.1 | AraC family transcriptional regulator | - |
| CEP88_RS00330 () | 76075..76989 | - | 915 | WP_011655453.1 | LysR family transcriptional regulator | - |
| CEP88_RS00335 () | 77100..78029 | + | 930 | WP_044033600.1 | VOC family protein | - |
| CEP88_RS00340 () | 78041..78667 | + | 627 | WP_011655451.1 | alpha/beta hydrolase | - |
| CEP88_RS00345 () | 78766..79011 | + | 246 | WP_011655450.1 | DUF1427 family protein | - |
| CEP88_RS00350 () | 79036..79743 | + | 708 | WP_011655449.1 | hydrolase | - |
| CEP88_RS00355 () | 79810..81525 | + | 1716 | WP_074958842.1 | amidohydrolase | - |
| CEP88_RS00360 () | 81641..82144 | + | 504 | WP_011655446.1 | DNA starvation/stationary phase protection protein Dps | - |
| CEP88_RS00365 () | 82204..82503 | + | 300 | WP_011655445.1 | N-acetyltransferase | - |
| CEP88_RS00370 () | 82487..84085 | + | 1599 | WP_011655444.1 | MFS transporter | - |
| CEP88_RS00375 () | 84170..84622 | + | 453 | WP_011655443.1 | (2Fe-2S)-binding protein | - |
| CEP88_RS00380 () | 84624..86813 | + | 2190 | WP_011655442.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| CEP88_RS00385 () | 86926..87519 | + | 594 | WP_105880239.1 | histidine phosphatase family protein | - |
| CEP88_RS00390 () | 87598..88560 | + | 963 | WP_011655440.1 | pirin family protein | - |
| CEP88_RS00395 () | 89289..90491 | - | 1203 | WP_011655439.1 | multidrug effflux MFS transporter | - |
| CEP88_RS20415 () | 91261..91581 | - | 321 | WP_050759153.1 | DUF736 family protein | - |
| CEP88_RS00405 () | 92586..93002 | - | 417 | WP_011655434.1 | type II toxin-antitoxin system VapC family toxin | - |
| CEP88_RS00410 () | 93002..93247 | - | 246 | WP_011655433.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| CEP88_RS00415 () | 93557..93643 | - | 87 | Protein_77 | 30S ribosomal protein S6 | - |
| CEP88_RS00420 () | 93983..94246 | - | 264 | WP_044033578.1 | hypothetical protein | - |
| CEP88_RS00425 () | 94243..95079 | - | 837 | WP_011655429.1 | hypothetical protein | - |
| CEP88_RS00430 () | 95079..95420 | - | 342 | WP_011655428.1 | hypothetical protein | - |
| CEP88_RS00435 () | 95520..97415 | - | 1896 | WP_011655427.1 | ParB/RepB/Spo0J family partition protein | - |
| CEP88_RS00440 () | 97670..98005 | - | 336 | WP_011655426.1 | DUF1419 domain-containing protein | - |
| CEP88_RS00445 () | 98655..99218 | + | 564 | WP_011655425.1 | hypothetical protein | - |
| CEP88_RS00450 () | 99388..99771 | + | 384 | WP_044033597.1 | nuclease | - |
| CEP88_RS00455 () | 99785..99982 | - | 198 | WP_105880236.1 | hypothetical protein | - |
| CEP88_RS00460 () | 100104..100652 | - | 549 | WP_050759152.1 | hypothetical protein | - |
| CEP88_RS00465 () | 100845..101426 | - | 582 | WP_011655421.1 | recombinase family protein | - |
| CEP88_RS00470 () | 101709..102395 | + | 687 | Protein_88 | IS21 family transposase | - |
| CEP88_RS00475 () | 102652..103302 | - | 651 | WP_105880240.1 | thermonuclease family protein | - |
| CEP88_RS00480 () | 103597..105525 | + | 1929 | WP_011655418.1 | PhoX family phosphatase | - |
| CEP88_RS00485 () | 105599..106282 | + | 684 | WP_171960021.1 | antirestriction protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|