MGE detailed information
MGE type: Prophage MGE length: 83628 bp
Accession: NZ_CP027366 Location: 2087400..2171027 Organism: Escherichia coli strain 89-3156 Replicon: chromosome
Accession: NZ_CP027366 Location: 2087400..2171027 Organism: Escherichia coli strain 89-3156 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P65_RS10830 () | 2082873..2085506 | + | 2634 | WP_001297532.1 | lipid-binding membrane homeostasis protein YebT | - |
| C6P65_RS10835 () | 2085586..2087025 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6P65_RS10840 () | 2087143..2087379 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P65_RS10845 () | 2087484..2087675 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6P65_RS10850 () | 2087676..2088332 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - () | 2088429..2088700 | + | 272 | - | - | Antitoxin Detail |
| - () | 2088467..2088570 | - | 104 | - | - | Toxin Detail |
| C6P65_RS10855 () | 2088728..2089069 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6P65_RS10860 () | 2089082..2089954 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P65_RS10865 () | 2089958..2090332 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6P65_RS10870 () | 2090471..2090701 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P65_RS10875 () | 2090803..2091459 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P65_RS10880 () | 2091483..2092145 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P65_RS10885 () | 2092142..2094202 | - | 2061 | WP_000936923.1 | oligopeptidase B | - |
| C6P65_RS10890 () | 2094411..2095070 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6P65_RS10895 () | 2095397..2095753 | - | 357 | WP_001295500.1 | protein YebF | - |
| C6P65_RS10900 () | 2095820..2096110 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6P65_RS10905 () | 2096244..2097422 | + | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6P65_RS10910 () | 2097478..2098119 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6P65_RS10915 () | 2098156..2099967 | - | 1812 | WP_001069469.1 | phosphogluconate dehydratase | - |
| C6P65_RS10920 () | 2100202..2101677 | - | 1476 | WP_000301730.1 | glucose-6-phosphate dehydrogenase | - |
| C6P65_RS10925 () | 2102015..2102884 | + | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| C6P65_RS10930 () | 2103012..2104454 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| C6P65_RS10935 () | 2104585..2105556 | - | 972 | WP_000448381.1 | putative D,D-dipeptide transport ATP-binding protein DdpD | VF |
| C6P65_RS10940 () | 2105676..2106998 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| C6P65_RS10945 () | 2107014..2107946 | - | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C6P65_RS10950 () | 2108025..2108780 | + | 756 | WP_000202996.1 | putative D,D-dipeptide transport system permease protein DdpB | VF |
| C6P65_RS10955 () | 2108777..2109562 | + | 786 | WP_000571479.1 | putative D,D-dipeptide-binding periplasmic protein DdpA | VF |
| C6P65_RS10960 () | 2109709..2110719 | - | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C6P65_RS10965 () | 2110728..2111339 | - | 612 | WP_000580328.1 | Holliday junction branch migration protein RuvA | - |
| C6P65_RS10970 () | 2111478..2111543 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| C6P65_RS10975 () | 2111614..2112216 | + | 603 | WP_001024917.1 | YebB family permuted papain-like enzyme | - |
| C6P65_RS10980 () | 2112218..2112739 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| C6P65_RS10985 () | 2112774..2113514 | - | 741 | WP_000907234.1 | putative glutamate/gamma-aminobutyrate antiporter | VF |
| C6P65_RS10990 () | 2113543..2113995 | - | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| C6P65_RS10995 () | 2114113..2115885 | - | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| C6P65_RS11000 () | 2116195..2116761 | + | 567 | WP_000891620.1 | hydrolase | - |
| C6P65_RS11005 () | 2117079..2117327 | + | 249 | WP_001261927.1 | DinI-like family protein | - |
| C6P65_RS11015 () | 2117597..2118268 | - | 672 | WP_000547693.1 | DUF4376 domain-containing protein | - |
| C6P65_RS11020 () | 2118310..2120037 | - | 1728 | WP_052920791.1 | ISNCY family transposase KIS | Transposase |
| C6P65_RS11025 () | 2120182..2120322 | - | 141 | WP_000078853.1 | Hok/Gef family protein | - |
| C6P65_RS11030 () | 2120521..2123988 | - | 3468 | WP_106884321.1 | host specificity protein J | - |
| C6P65_RS11035 () | 2124903..2125535 | - | 633 | WP_072121435.1 | tail assembly protein | - |
| C6P65_RS11040 () | 2125481..2126224 | - | 744 | WP_062881343.1 | C40 family peptidase | - |
| C6P65_RS11045 () | 2126235..2126933 | - | 699 | WP_001385822.1 | phage minor tail protein L | - |
| C6P65_RS11050 () | 2127144..2128307 | - | 1164 | WP_000738904.1 | porin OmpC | - |
| C6P65_RS11055 () | 2128506..2128847 | - | 342 | WP_000343412.1 | phage tail protein | - |
| C6P65_RS11060 () | 2128840..2132106 | - | 3267 | WP_000212966.1 | phage tail tape measure protein | - |
| C6P65_RS11065 () | 2132154..2132363 | - | 210 | WP_122993267.1 | DUF4035 domain-containing protein | - |
| C6P65_RS11070 () | 2132459..2132833 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| C6P65_RS11075 () | 2132848..2133564 | - | 717 | WP_001275447.1 | immunoglobulin domain-containing protein | - |
| C6P65_RS11080 () | 2133631..2133975 | - | 345 | WP_000133383.1 | DUF3168 domain-containing protein | - |
| C6P65_RS11085 () | 2133972..2134418 | - | 447 | WP_000573359.1 | HK97 gp10 family phage protein | - |
| C6P65_RS11090 () | 2134415..2134765 | - | 351 | WP_001029274.1 | phage head closure protein | - |
| C6P65_RS11095 () | 2134775..2135101 | - | 327 | WP_000125990.1 | head-tail connector protein | - |
| C6P65_RS11100 () | 2135098..2137682 | - | 2585 | Protein_2033 | phage portal protein | - |
| C6P65_RS11105 () | 2137628..2137849 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| C6P65_RS11110 () | 2137894..2139831 | - | 1938 | WP_000172990.1 | phage major capsid protein | - |
| C6P65_RS11115 () | 2139895..2141556 | - | 1662 | WP_024210905.1 | terminase large subunit | - |
| C6P65_RS11120 () | 2141553..2142116 | - | 564 | WP_000958387.1 | terminase small subunit | - |
| C6P65_RS11130 () | 2142407..2142772 | - | 366 | WP_000829192.1 | HNH endonuclease | - |
| C6P65_RS11135 () | 2142814..2143014 | + | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| C6P65_RS11140 () | 2143146..2143472 | - | 327 | WP_000828069.1 | TonB family protein | - |
| C6P65_RS11155 () | 2143916..2144296 | - | 381 | WP_000999673.1 | hypothetical protein | - |
| C6P65_RS11160 () | 2144455..2144997 | - | 543 | WP_001109018.1 | Rha family transcriptional regulator | - |
| C6P65_RS11165 () | 2145200..2145637 | - | 438 | WP_001385819.1 | lysis protein | - |
| C6P65_RS27215 () | 2145645..2145794 | - | 150 | WP_000455399.1 | hypothetical protein | - |
| C6P65_RS11170 () | 2145794..2146366 | - | 573 | WP_001056870.1 | hypothetical protein | - |
| C6P65_RS11175 () | 2146641..2147174 | - | 534 | WP_001092896.1 | lysozyme | - |
| C6P65_RS11180 () | 2147211..2147768 | - | 558 | WP_001385817.1 | hypothetical protein | - |
| C6P65_RS11185 () | 2147772..2147987 | - | 216 | WP_000284506.1 | class II holin family protein | - |
| C6P65_RS11195 () | 2148485..2150449 | - | 1965 | WP_106884322.1 | SASA family carbohydrate esterase | - |
| C6P65_RS11200 () | 2150694..2151017 | + | 324 | WP_032212063.1 | anti-adapter protein IraM | - |
| C6P65_RS11205 () | 2151315..2151584 | - | 270 | WP_000738080.1 | Aryl-phospho-beta-D-glucosidase BglA | VF |
| C6P65_RS11210 () | 2151596..2152555 | - | 960 | WP_000649753.1 | Cryptic outer membrane porin BglH | VF |
| C6P65_RS11230 () | 2152938..2153996 | - | 1059 | WP_047084243.1 | site-specific DNA-methyltransferase | - |
| C6P65_RS11235 () | 2154147..2154344 | - | 198 | WP_000917768.1 | hypothetical protein | - |
| C6P65_RS11240 () | 2154599..2155630 | + | 1032 | WP_000043971.1 | hypothetical protein | - |
| C6P65_RS11245 () | 2155701..2156162 | + | 462 | WP_001385857.1 | hypothetical protein | - |
| C6P65_RS11250 () | 2156184..2156525 | - | 342 | WP_001205471.1 | antitermination protein Q | - |
| C6P65_RS11255 () | 2156543..2157532 | - | 990 | WP_001385858.1 | DUF968 domain-containing protein | - |
| C6P65_RS11260 () | 2157584..2157841 | - | 258 | WP_001065348.1 | hypothetical protein | - |
| C6P65_RS11265 () | 2157838..2159238 | - | 1401 | WP_000184327.1 | replicative DNA helicase | - |
| C6P65_RS11270 () | 2159235..2160125 | - | 891 | WP_028985667.1 | ATP-binding protein | - |
| C6P65_RS11275 () | 2160145..2161056 | - | 912 | WP_000095570.1 | helix-turn-helix domain-containing protein | - |
| C6P65_RS27430 () | 2161053..2161277 | - | 225 | WP_000618002.1 | hypothetical protein | - |
| C6P65_RS27435 () | 2161274..2161468 | - | 195 | WP_000626792.1 | hypothetical protein | - |
| C6P65_RS11290 () | 2161465..2162124 | - | 660 | WP_000622005.1 | ash family protein | - |
| C6P65_RS11295 () | 2162121..2162972 | - | 852 | WP_000636505.1 | Rha family phage regulatory protein | - |
| C6P65_RS11300 () | 2162969..2163793 | - | 825 | WP_000794367.1 | transporter | - |
| C6P65_RS11305 () | 2163846..2164553 | - | 708 | WP_001098349.1 | Rha family transcriptional regulator | - |
| C6P65_RS11310 () | 2164550..2164813 | - | 264 | WP_000786996.1 | helix-turn-helix domain-containing protein | - |
| C6P65_RS11315 () | 2164937..2165641 | + | 705 | WP_000010195.1 | helix-turn-helix transcriptional regulator | - |
| C6P65_RS11320 () | 2166025..2166489 | + | 465 | WP_047084244.1 | helix-turn-helix domain-containing protein | - |
| C6P65_RS11325 () | 2166495..2166695 | + | 201 | WP_000147367.1 | hypothetical protein | - |
| C6P65_RS11330 () | 2166893..2167075 | + | 183 | WP_000553978.1 | hypothetical protein | - |
| C6P65_RS11335 () | 2167081..2167653 | + | 573 | WP_001385860.1 | hypothetical protein | - |
| C6P65_RS11345 () | 2168023..2168850 | + | 828 | WP_000720005.1 | hypothetical protein | - |
| C6P65_RS11350 () | 2168891..2169262 | + | 372 | WP_001484100.1 | DUF5406 family protein | - |
| C6P65_RS11355 () | 2169294..2169398 | + | 105 | Protein_2077 | DUF4222 domain-containing protein | - |
| C6P65_RS11360 () | 2169454..2169707 | + | 254 | Protein_2078 | excisionase family protein | - |
| C6P65_RS11365 () | 2169741..2171027 | + | 1287 | WP_000063650.1 | Anaerobic dimethyl sulfoxide reductase chain C ; Integrase | Integrase |
| C6P65_RS11370 () | 2171032..2171808 | + | 777 | WP_069190626.1 | DUF72 domain-containing protein | - |
| C6P65_RS11375 () | 2171861..2172256 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| C6P65_RS11380 () | 2172297..2173040 | + | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| C6P65_RS11385 () | 2173037..2174008 | + | 972 | WP_000564742.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| C6P65_RS11390 () | 2174202..2175182 | - | 981 | WP_000399648.1 | IS110-like element IS621 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|