Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2088429..2088700 | Replicon | chromosome |
| Accession | NZ_CP027366 | ||
| Organism | Escherichia coli strain 89-3156 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2088467..2088570 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2088429..2088700 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P65_RS10835 | 2085586..2087025 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6P65_RS10840 | 2087143..2087379 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P65_RS10845 | 2087484..2087675 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6P65_RS10850 | 2087676..2088332 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2088429..2088700 | + | 272 | - | - | Antitoxin |
| - | 2088467..2088570 | - | 104 | - | - | Toxin |
| C6P65_RS10855 | 2088728..2089069 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6P65_RS10860 | 2089082..2089954 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6P65_RS10865 | 2089958..2090332 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6P65_RS10870 | 2090471..2090701 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P65_RS10875 | 2090803..2091459 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P65_RS10880 | 2091483..2092145 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | stx2B / stx2A | 2087400..2171027 | 83627 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98352 NZ_CP027366:c2088570-2088467 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98352 NZ_CP027366:2088429-2088700 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
