MGE detailed information
MGE type: Prophage MGE length: 99758 bp
Accession: NZ_CP027361 Location: 4233782..4333539 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Accession: NZ_CP027361 Location: 4233782..4333539 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR62_RS21300 (4230295) | 4230295..4231041 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| RR62_RS21305 (4231130) | 4231130..4231816 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| RR62_RS21310 (4231994) | 4231994..4232197 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RR62_RS21315 (4232233) | 4232233..4233693 | - | 1461 | Protein_4126 | mannitol dehydrogenase family protein | - |
| RR62_RS21320 (4233782) | 4233782..4235065 | - | 1284 | Protein_4127 | MHS family MFS transporter YdfJ | - |
| RR62_RS21325 (4235668) | 4235668..4235781 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| RR62_RS21330 (4235850) | 4235850..4236083 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RR62_RS21335 (4236400) | 4236400..4236990 | + | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RR62_RS21340 (4237088) | 4237088..4237663 | - | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| RR62_RS21345 (4237663) | 4237663..4240623 | - | 2961 | WP_001448491.1 | prophage tail fiber N-terminal domain-containing protein | - |
| RR62_RS21350 (4240688) | 4240688..4241287 | - | 600 | WP_001233114.1 | Outer membrane protein X | VF |
| RR62_RS21355 (4241358) | 4241358..4244771 | - | 3414 | WP_000515505.1 | host specificity protein J | - |
| RR62_RS21360 (4244832) | 4244832..4245479 | - | 648 | WP_000741589.1 | tail assembly protein | - |
| RR62_RS21365 (4245377) | 4245377..4246120 | - | 744 | WP_000140707.1 | C40 family peptidase | - |
| RR62_RS21370 (4246125) | 4246125..4246823 | - | 699 | WP_001152371.1 | phage minor tail protein L | - |
| RR62_RS21375 (4246833) | 4246833..4247162 | - | 330 | WP_000447251.1 | phage tail protein | - |
| RR62_RS21380 (4247162) | 4247162..4250227 | - | 3066 | WP_000372024.1 | phage tail tape measure protein | - |
| RR62_RS21385 (4250199) | 4250199..4250528 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| RR62_RS21390 (4250537) | 4250537..4250923 | - | 387 | WP_001341514.1 | phage minor tail protein G | - |
| RR62_RS21395 (4250984) | 4250984..4251727 | - | 744 | WP_000211132.1 | Ig domain-containing protein | - |
| RR62_RS21400 (4251738) | 4251738..4252139 | - | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| RR62_RS21405 (4252136) | 4252136..4252714 | - | 579 | WP_000677128.1 | phage tail protein | - |
| RR62_RS21410 (4252726) | 4252726..4253001 | - | 276 | WP_001283148.1 | DNA breaking-rejoining protein | - |
| RR62_RS21415 (4252994) | 4252994..4253317 | - | 324 | WP_001097041.1 | DUF2190 family protein | - |
| RR62_RS21420 (4253404) | 4253404..4255431 | - | 2028 | WP_001136588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| RR62_RS21425 (4255376) | 4255376..4256884 | - | 1509 | WP_000985929.1 | phage portal protein | - |
| RR62_RS21430 (4256884) | 4256884..4257096 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| RR62_RS21435 (4257093) | 4257093..4259192 | - | 2100 | WP_000507036.1 | phage terminase large subunit family protein | - |
| RR62_RS21440 (4259201) | 4259201..4259728 | - | 528 | WP_001389340.1 | DUF1441 family protein | - |
| RR62_RS21445 (4260301) | 4260301..4260507 | - | 207 | WP_001031435.1 | hypothetical protein | - |
| RR62_RS21450 (4260808) | 4260808..4261218 | + | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| RR62_RS21455 (4261370) | 4261370..4261543 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RR62_RS21460 (4261715) | 4261715..4261870 | - | 156 | WP_001309517.1 | protein YnfN | - |
| RR62_RS21465 (4261950) | 4261950..4262015 | - | 66 | WP_122134696.1 | small protein YnfR | - |
| RR62_RS21470 (4262018) | 4262018..4262206 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| RR62_RS21475 (4262217) | 4262217..4262429 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RR62_RS21480 (4262792) | 4262792..4263289 | - | 498 | WP_100031217.1 | DUF2514 domain-containing protein | - |
| RR62_RS21485 (4263286) | 4263286..4263819 | - | 534 | WP_001092971.1 | lysozyme | - |
| RR62_RS21490 (4263816) | 4263816..4264127 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| RR62_RS21495 (4264132) | 4264132..4264347 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RR62_RS21500 (4264567) | 4264567..4264737 | + | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| RR62_RS21505 (4265101) | 4265101..4265316 | - | 216 | WP_000066483.1 | cold shock-like protein CspB | - |
| RR62_RS21510 (4265617) | 4265617..4265829 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RR62_RS21515 (4265884) | 4265884..4265973 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| RR62_RS21520 (4266251) | 4266251..4267003 | - | 753 | WP_001047133.1 | antitermination protein | - |
| RR62_RS21525 (4267017) | 4267017..4268066 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RR62_RS21530 (4268068) | 4268068..4268346 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| RR62_RS21535 (4268413) | 4268413..4268664 | - | 252 | WP_000980994.1 | protein Rem | - |
| RR62_RS21540 (4268881) | 4268881..4269036 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RR62_RS21545 (4269108) | 4269108..4269395 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RR62_RS21550 (4269395) | 4269395..4269634 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RR62_RS21555 (4269659) | 4269659..4269964 | + | 306 | WP_001326990.1 | protein YdfV | - |
| RR62_RS21560 (4270167) | 4270167..4270499 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| RR62_RS27330 (4270936) | 4270936..4271085 | - | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| RR62_RS21565 (4271158) | 4271158..4272255 | - | 1098 | Protein_4177 | ISNCY family transposase ISCARN112 | Transposase |
| RR62_RS21570 (4272310) | 4272310..4272729 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| RR62_RS21575 (4272770) | 4272770..4273735 | - | 966 | WP_000054507.1 | hypothetical protein | - |
| RR62_RS21580 (4273716) | 4273716..4274237 | - | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| RR62_RS21585 (4274221) | 4274221..4274448 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| RR62_RS21590 (4274526) | 4274526..4274933 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| RR62_RS21595 (4275126) | 4275126..4275281 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| RR62_RS21600 (4275283) | 4275283..4275858 | + | 576 | WP_000347171.1 | hypothetical protein | - |
| RR62_RS21605 (4276345) | 4276345..4276533 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RR62_RS21610 (4276530) | 4276530..4276721 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| RR62_RS21615 (4276815) | 4276815..4279286 | + | 2472 | WP_000048369.1 | exonuclease | - |
| RR62_RS21620 (4279359) | 4279359..4279451 | + | 93 | Protein_4188 | excisionase family protein | - |
| RR62_RS21625 (4279482) | 4279482..4281053 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS21630 (4281073) | 4281073..4281420 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS21635 (4281420) | 4281420..4282097 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| RR62_RS21640 (4282153) | 4282153..4283466 | - | 1314 | WP_000279108.1 | ISNCY family transposase KIS | Transposase |
| RR62_RS21645 (4283531) | 4283531..4284130 | - | 600 | WP_001230532.1 | Outer membrane protein X | VF |
| RR62_RS21650 (4284197) | 4284197..4287670 | - | 3474 | WP_106882048.1 | host specificity protein J | - |
| RR62_RS21655 (4287916) | 4287916..4288497 | - | 582 | WP_001090050.1 | tail assembly protein | - |
| RR62_RS21660 (4288494) | 4288494..4289237 | - | 744 | WP_012817760.1 | C40 family peptidase | - |
| RR62_RS21665 (4289248) | 4289248..4289946 | - | 699 | WP_106882046.1 | phage minor tail protein L | - |
| RR62_RS21670 (4289946) | 4289946..4290287 | - | 342 | WP_000807940.1 | phage tail protein | - |
| RR62_RS21675 (4290280) | 4290280..4293522 | - | 3243 | WP_000212983.1 | phage tail tape measure protein | - |
| RR62_RS21680 (4293570) | 4293570..4293779 | - | 210 | WP_001513217.1 | DUF4035 domain-containing protein | - |
| RR62_RS21685 (4293875) | 4293875..4294249 | - | 375 | WP_001030060.1 | phage tail assembly chaperone | - |
| RR62_RS21690 (4294255) | 4294255..4294971 | - | 717 | WP_001275459.1 | major tail subunit | - |
| RR62_RS21695 (4295037) | 4295037..4295381 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| RR62_RS21700 (4295378) | 4295378..4295824 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| RR62_RS21705 (4295821) | 4295821..4296171 | - | 351 | WP_001007892.1 | phage head closure protein | - |
| RR62_RS21710 (4296182) | 4296182..4296508 | - | 327 | WP_000125984.1 | head-tail connector protein | - |
| RR62_RS21715 (4296505) | 4296505..4299089 | - | 2585 | Protein_4207 | phage portal protein | - |
| RR62_RS21720 (4299035) | 4299035..4299256 | - | 222 | WP_001063025.1 | hypothetical protein | - |
| RR62_RS21725 (4299301) | 4299301..4301238 | - | 1938 | WP_000173033.1 | phage major capsid protein | - |
| RR62_RS21730 (4301302) | 4301302..4302963 | - | 1662 | WP_001341975.1 | terminase large subunit | - |
| RR62_RS21735 (4302960) | 4302960..4303523 | - | 564 | WP_106882044.1 | terminase small subunit | - |
| RR62_RS21740 (4303812) | 4303812..4304177 | - | 366 | WP_001303046.1 | HNH endonuclease | - |
| RR62_RS21745 (4304219) | 4304219..4304446 | + | 228 | WP_000095749.1 | YlcI/YnfO family protein | - |
| RR62_RS21750 (4304871) | 4304871..4305056 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| RR62_RS21755 (4305284) | 4305284..4305430 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| RR62_RS21760 (4305430) | 4305430..4305999 | - | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| RR62_RS21765 (4306270) | 4306270..4306803 | - | 534 | WP_001092890.1 | lysozyme | - |
| RR62_RS21770 (4306854) | 4306854..4307198 | - | 345 | WP_000731236.1 | YdfR family protein | - |
| RR62_RS21775 (4307203) | 4307203..4307418 | - | 216 | WP_000284518.1 | class II holin family protein | - |
| RR62_RS21780 (4307495) | 4307495..4307767 | - | 273 | WP_001290217.1 | DUF826 domain-containing protein | - |
| RR62_RS21785 (4307808) | 4307808..4307987 | - | 180 | WP_000143462.1 | DUF1378 family protein | - |
| RR62_RS21790 (4308123) | 4308123..4310060 | - | 1938 | WP_000142998.1 | SASA family carbohydrate esterase | - |
| RR62_RS21795 (4310560) | 4310560..4310829 | - | 270 | WP_000752026.1 | Shiga toxin subunit B | VF |
| RR62_RS21800 (4310839) | 4310839..4311786 | - | 948 | WP_000691354.1 | Shiga toxin subunit A | VF |
| RR62_RS21805 (4312293) | 4312293..4312727 | - | 435 | WP_001204852.1 | antiterminator Q family protein | - |
| RR62_RS21810 (4312720) | 4312720..4312914 | - | 195 | WP_000144759.1 | phage NinH family protein | - |
| RR62_RS21815 (4312911) | 4312911..4313516 | - | 606 | WP_001107963.1 | recombination protein NinG | - |
| RR62_RS21820 (4313516) | 4313516..4314238 | - | 723 | WP_001004024.1 | DNA-binding protein | - |
| RR62_RS21825 (4314313) | 4314313..4315047 | - | 735 | WP_000211422.1 | phage antirepressor Ant | - |
| RR62_RS21830 (4315322) | 4315322..4315504 | - | 183 | WP_001254256.1 | NinE family protein | - |
| RR62_RS21835 (4315501) | 4315501..4316028 | - | 528 | WP_000153280.1 | phage N-6-adenine-methyltransferase | - |
| RR62_RS21840 (4316025) | 4316025..4316471 | - | 447 | WP_000814576.1 | recombination protein NinB | - |
| RR62_RS21845 (4316428) | 4316428..4316664 | - | 237 | WP_001281772.1 | Lar family restriction alleviation protein | - |
| RR62_RS21850 (4316675) | 4316675..4316890 | - | 216 | WP_000103679.1 | hypothetical protein | - |
| RR62_RS21855 (4317023) | 4317023..4317301 | - | 279 | WP_001000127.1 | hypothetical protein | - |
| RR62_RS21860 (4317372) | 4317372..4317662 | - | 291 | WP_000145907.1 | protein ren | - |
| RR62_RS21865 (4317659) | 4317659..4318360 | - | 702 | WP_000788927.1 | replication protein P | - |
| RR62_RS21870 (4318357) | 4318357..4319295 | - | 939 | WP_000185454.1 | replication protein | - |
| RR62_RS21875 (4319328) | 4319328..4319624 | - | 297 | WP_000438542.1 | CII family transcriptional regulator | - |
| RR62_RS21880 (4319763) | 4319763..4319996 | - | 234 | WP_000064148.1 | hypothetical protein | - |
| RR62_RS21885 (4320110) | 4320110..4320814 | + | 705 | WP_000428098.1 | helix-turn-helix transcriptional regulator | - |
| RR62_RS21890 (4320951) | 4320951..4321238 | + | 288 | WP_000866443.1 | type II toxin-antitoxin system HigB family toxin | - |
| RR62_RS21895 (4321235) | 4321235..4321891 | + | 657 | WP_001082382.1 | transcriptional regulator | - |
| RR62_RS21900 (4321888) | 4321888..4322292 | + | 405 | WP_000687675.1 | hypothetical protein | - |
| RR62_RS27335 (4323115) | 4323115..4323183 | + | 69 | Protein_4245 | regulator | - |
| RR62_RS21910 (4323242) | 4323242..4323712 | + | 471 | WP_000167595.1 | hypothetical protein | - |
| RR62_RS21915 (4323906) | 4323906..4324046 | + | 141 | WP_001198866.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| RR62_RS21920 (4324039) | 4324039..4324152 | + | 114 | WP_000361831.1 | host cell division inhibitory peptide Kil | - |
| RR62_RS21925 (4324149) | 4324149..4324337 | + | 189 | WP_000613346.1 | hypothetical protein | - |
| RR62_RS21930 (4324346) | 4324346..4325026 | + | 681 | WP_000536228.1 | AAA family ATPase | - |
| RR62_RS21935 (4325023) | 4325023..4325610 | + | 588 | WP_000073098.1 | hypothetical protein | - |
| RR62_RS21940 (4325634) | 4325634..4325930 | + | 297 | WP_001111290.1 | DUF2856 family protein | - |
| RR62_RS21945 (4325941) | 4325941..4326105 | + | 165 | WP_001214439.1 | DUF2737 family protein | - |
| RR62_RS21950 (4326102) | 4326102..4326731 | + | 630 | WP_000812200.1 | hypothetical protein | - |
| RR62_RS21955 (4326728) | 4326728..4327135 | + | 408 | WP_000034212.1 | ead/Ea22-like family protein | - |
| RR62_RS21960 (4327137) | 4327137..4327328 | + | 192 | WP_001014298.1 | hypothetical protein | - |
| RR62_RS21965 (4327331) | 4327331..4327789 | + | 459 | WP_000206782.1 | hypothetical protein | - |
| RR62_RS21970 (4327795) | 4327795..4327992 | + | 198 | WP_000224734.1 | hypothetical protein | - |
| RR62_RS21975 (4327994) | 4327994..4328172 | + | 179 | Protein_4259 | hypothetical protein | - |
| RR62_RS27340 (4328506) | 4328506..4328955 | + | 450 | Protein_4260 | DUF551 domain-containing protein | - |
| RR62_RS27345 (4329121) | 4329121..4329417 | + | 297 | Protein_4261 | DUF551 domain-containing protein | - |
| RR62_RS21985 (4329410) | 4329410..4329565 | + | 156 | WP_000002083.1 | DUF1382 family protein | - |
| RR62_RS21990 (4329684) | 4329684..4330840 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| RR62_RS21995 (4330868) | 4330868..4331230 | + | 363 | WP_106882042.1 | DUF1627 domain-containing protein | - |
| RR62_RS22000 (4331374) | 4331374..4331607 | + | 234 | WP_021351637.1 | hypothetical protein | - |
| RR62_RS22005 (4331595) | 4331595..4331846 | + | 252 | WP_000497812.1 | DUF4222 domain-containing protein | - |
| RR62_RS22010 (4331892) | 4331892..4332176 | + | 285 | WP_001208773.1 | excisionase family protein | - |
| RR62_RS22015 (4332229) | 4332229..4333539 | + | 1311 | WP_000013656.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RR62_RS22020 (4333536) | 4333536..4334114 | + | 579 | WP_000607021.1 | NAD(P)H:quinone oxidoreductase | - |
| RR62_RS22025 (4334135) | 4334135..4334362 | + | 228 | WP_001143120.1 | YccJ family protein | - |
| RR62_RS22030 (4334400) | 4334400..4335641 | - | 1242 | WP_001044313.1 | bifunctional glucose-1-phosphatase/inositol phosphatase | - |
| RR62_RS22035 (4335933) | 4335933..4337192 | - | 1260 | WP_000097601.1 | YccE family protein | - |
| RR62_RS22040 (4337452) | 4337452..4338372 | + | 921 | WP_000420629.1 | curved DNA-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|