MGE detailed information
MGE type: Prophage MGE length: 44565 bp
Accession: NZ_CP027361 Location: 3984983..4029547 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Accession: NZ_CP027361 Location: 3984983..4029547 Organism: Escherichia coli strain 2014C-4639 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR62_RS20095 (3980972) | 3980972..3981019 | + | 48 | WP_211180494.1 | protein YnaN | - |
| RR62_RS20100 (3981033) | 3981033..3982016 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| RR62_RS20105 (3982494) | 3982494..3983867 | + | 1374 | WP_000123745.1 | ATP-dependent RNA helicase DbpA | - |
| RR62_RS20110 (3983996) | 3983996..3984931 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| RR62_RS20115 (3984983) | 3984983..3986218 | - | 1236 | WP_000040851.1 | Putative defective protein IntQ ; Integrase | Integrase |
| RR62_RS20120 (3986220) | 3986220..3986435 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (3986539) | 3986539..3986717 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3986539) | 3986539..3986717 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3986539) | 3986539..3986717 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (3986539) | 3986539..3986717 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| RR62_RS20125 (3986535) | 3986535..3986723 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| RR62_RS20130 (3986761) | 3986761..3986910 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| RR62_RS20135 (3986966) | 3986966..3987775 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| RR62_RS20140 (3987768) | 3987768..3990368 | - | 2601 | WP_000105151.1 | exodeoxyribonuclease VIII | - |
| RR62_RS20145 (3990470) | 3990470..3990745 | - | 276 | WP_000632297.1 | protein RacC | - |
| RR62_RS20150 (3990820) | 3990820..3990990 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| RR62_RS20155 (3990990) | 3990990..3991211 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| RR62_RS20160 (3991632) | 3991632..3991784 | - | 153 | WP_001427316.1 | DUF1391 family protein | - |
| RR62_RS20165 (3992083) | 3992083..3992502 | - | 420 | WP_000233320.1 | helix-turn-helix domain-containing protein | - |
| RR62_RS20170 (3992582) | 3992582..3992836 | + | 255 | WP_001072343.1 | hypothetical protein | - |
| RR62_RS20175 (3992833) | 3992833..3993255 | + | 423 | WP_000693802.1 | toxin YdaT family protein | - |
| RR62_RS20180 (3993268) | 3993268..3994125 | + | 858 | WP_000899746.1 | YdaU family protein | - |
| RR62_RS20185 (3994132) | 3994132..3994878 | + | 747 | WP_000788968.1 | ATP-binding protein | - |
| RR62_RS20190 (3994901) | 3994901..3995662 | + | 762 | WP_000450672.1 | DUF1627 domain-containing protein | - |
| RR62_RS20195 (3995678) | 3995678..3996100 | + | 423 | WP_001151124.1 | DUF977 family protein | - |
| RR62_RS20200 (3996097) | 3996097..3996393 | + | 297 | WP_001266134.1 | DUF4406 domain-containing protein | - |
| RR62_RS20205 (3996390) | 3996390..3996851 | + | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| RR62_RS20210 (3996829) | 3996829..3997185 | + | 357 | WP_000403777.1 | hypothetical protein | - |
| RR62_RS20215 (3997236) | 3997236..3997448 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| RR62_RS20220 (3997481) | 3997481..3997698 | + | 218 | Protein_3906 | DUF4014 family protein | - |
| RR62_RS20225 (3997700) | 3997700..3997963 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| RR62_RS27310 (3997974) | 3997974..3998099 | + | 126 | Protein_3908 | hypothetical protein | - |
| RR62_RS27315 (3998655) | 3998655..3998843 | + | 189 | WP_001496105.1 | DUF551 domain-containing protein | - |
| RR62_RS20235 (3998959) | 3998959..3999063 | + | 105 | WP_001278454.1 | hypothetical protein | - |
| RR62_RS20240 (3999310) | 3999310..3999465 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RR62_RS20245 (3999633) | 3999633..3999911 | + | 279 | WP_001341382.1 | hypothetical protein | - |
| RR62_RS20250 (3999913) | 3999913..4000962 | + | 1050 | WP_001265080.1 | DUF968 domain-containing protein | - |
| RR62_RS20255 (4000975) | 4000975..4001349 | + | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RR62_RS20260 (4001346) | 4001346..4002167 | + | 822 | WP_000762928.1 | antitermination protein | - |
| RR62_RS20265 (4002405) | 4002405..4002767 | + | 363 | Protein_3916 | tellurite resistance TerB family protein | - |
| RR62_RS20270 (4002764) | 4002764..4002931 | + | 168 | WP_000216636.1 | DUF3927 family protein | - |
| RR62_RS20275 (4003338) | 4003338..4005188 | + | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| RR62_RS20280 (4005627) | 4005627..4005842 | + | 216 | WP_024164617.1 | class II holin family protein | - |
| RR62_RS20285 (4005842) | 4005842..4006339 | + | 498 | WP_000075132.1 | lysozyme RrrD | - |
| RR62_RS20290 (4006336) | 4006336..4006773 | + | 438 | WP_000092325.1 | lysis protein | - |
| RR62_RS20295 (4006923) | 4006923..4007540 | + | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| RR62_RS20300 (4007728) | 4007728..4007922 | - | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| RR62_RS20305 (4008311) | 4008311..4008856 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| RR62_RS20310 (4008831) | 4008831..4010645 | + | 1815 | WP_106882055.1 | phage terminase large subunit family protein | - |
| RR62_RS20315 (4010642) | 4010642..4010848 | + | 207 | WP_000198153.1 | gpW family protein | - |
| RR62_RS20320 (4010845) | 4010845..4012446 | + | 1602 | WP_001443752.1 | phage portal protein | - |
| RR62_RS20325 (4012427) | 4012427..4013746 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| RR62_RS20330 (4013756) | 4013756..4014088 | + | 333 | WP_001365129.1 | head decoration protein | - |
| RR62_RS20335 (4014144) | 4014144..4015169 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| RR62_RS20340 (4015211) | 4015211..4015606 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| RR62_RS20345 (4015618) | 4015618..4015971 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| RR62_RS20350 (4015983) | 4015983..4016561 | + | 579 | WP_000975098.1 | phage tail protein | - |
| RR62_RS20355 (4016558) | 4016558..4016953 | + | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| RR62_RS20360 (4016961) | 4016961..4017713 | + | 753 | WP_106882053.1 | phage tail protein | - |
| RR62_RS20365 (4017727) | 4017727..4018158 | + | 432 | WP_000479086.1 | phage minor tail protein G | - |
| RR62_RS20370 (4018185) | 4018185..4018598 | + | 414 | WP_000533431.1 | phage tail assembly protein T | - |
| RR62_RS20375 (4018579) | 4018579..4021158 | + | 2580 | WP_000082320.1 | phage tail tape measure protein | - |
| RR62_RS20380 (4021155) | 4021155..4021484 | + | 330 | WP_000847304.1 | phage tail protein | - |
| RR62_RS20385 (4021484) | 4021484..4022182 | + | 699 | WP_001375577.1 | phage minor tail protein L | - |
| RR62_RS20390 (4022188) | 4022188..4022931 | + | 744 | WP_001429308.1 | C40 family peptidase | - |
| RR62_RS20395 (4022928) | 4022928..4023509 | + | 582 | WP_001090050.1 | tail assembly protein | - |
| RR62_RS20400 (4023755) | 4023755..4027231 | + | 3477 | WP_000515142.1 | host specificity protein J | - |
| RR62_RS20405 (4027299) | 4027299..4027898 | + | 600 | WP_001230449.1 | Outer membrane protein X | VF |
| RR62_RS20410 (4027963) | 4027963..4029276 | + | 1314 | WP_000268927.1 | ISNCY family transposase KIS | Transposase |
| RR62_RS20415 (4029278) | 4029278..4029547 | + | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| RR62_RS20420 (4029660) | 4029660..4030235 | + | 576 | WP_001131657.1 | DUF1076 domain-containing protein | - |
| RR62_RS20425 (4030308) | 4030308..4030937 | + | 630 | WP_001443810.1 | DUF1076 domain-containing protein | - |
| RR62_RS20430 (4031019) | 4031019..4031660 | + | 642 | WP_001143784.1 | DUF1076 domain-containing protein | - |
| RR62_RS20435 (4032601) | 4032601..4033035 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
| RR62_RS20440 (4033176) | 4033176..4034309 | - | 1134 | WP_106882051.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|