MGE detailed information
MGE type: Prophage MGE length: 88461 bp
Accession: NZ_CP027355 Location: 603566..692026 Organism: Escherichia coli strain 2013C-4991 Replicon: chromosome
Accession: NZ_CP027355 Location: 603566..692026 Organism: Escherichia coli strain 2013C-4991 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P55_RS03315 () | 600585..601556 | - | 972 | WP_000564726.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| C6P55_RS03320 () | 601553..602296 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| C6P55_RS03325 () | 602337..602732 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| C6P55_RS03330 () | 602785..603561 | - | 777 | WP_044809741.1 | DUF72 domain-containing protein | - |
| C6P55_RS03335 () | 603566..604852 | - | 1287 | WP_000063650.1 | Hemin import ATP-binding protein HmuV ; Integrase | Integrase |
| C6P55_RS03340 () | 604886..605140 | - | 255 | WP_001193437.1 | excisionase family protein | - |
| C6P55_RS03345 () | 605159..605293 | - | 135 | WP_000556583.1 | hypothetical protein | - |
| C6P55_RS03350 () | 605297..605539 | - | 243 | WP_000457705.1 | DUF4222 domain-containing protein | - |
| C6P55_RS03355 () | 605571..605939 | - | 369 | WP_001084329.1 | DUF5406 family protein | - |
| C6P55_RS03360 () | 605936..606217 | - | 282 | WP_000070808.1 | hypothetical protein | - |
| C6P55_RS03365 () | 606220..606801 | - | 582 | WP_001434061.1 | hypothetical protein | - |
| C6P55_RS03370 () | 606798..606992 | - | 195 | WP_032144886.1 | hypothetical protein | - |
| C6P55_RS03375 () | 607213..607419 | - | 207 | WP_000141094.1 | hypothetical protein | - |
| C6P55_RS03385 () | 607800..608480 | - | 681 | WP_001201870.1 | helix-turn-helix domain-containing protein | - |
| C6P55_RS03390 () | 608613..609338 | - | 726 | WP_001434065.1 | helix-turn-helix transcriptional regulator | - |
| C6P55_RS03395 () | 609474..609725 | + | 252 | WP_000833499.1 | helix-turn-helix domain-containing protein | - |
| C6P55_RS03400 () | 609722..610429 | + | 708 | WP_001090256.1 | Rha family transcriptional regulator | - |
| C6P55_RS03405 () | 610538..611200 | + | 663 | WP_033803520.1 | ash family protein | - |
| C6P55_RS03410 () | 611197..611391 | + | 195 | WP_000626792.1 | hypothetical protein | - |
| C6P55_RS03415 () | 611388..611621 | + | 234 | WP_000621935.1 | hypothetical protein | - |
| C6P55_RS03420 () | 611608..612516 | + | 909 | WP_106912639.1 | DNA-binding protein | - |
| C6P55_RS03425 () | 612527..613405 | + | 879 | WP_000988196.1 | ATP-binding protein | - |
| C6P55_RS03430 () | 613402..614802 | + | 1401 | WP_000203852.1 | replicative DNA helicase | - |
| C6P55_RS03435 () | 614799..615056 | + | 258 | WP_001065352.1 | hypothetical protein | - |
| C6P55_RS03440 () | 615108..616097 | + | 990 | WP_001202271.1 | DUF968 domain-containing protein | - |
| C6P55_RS03445 () | 616116..616496 | + | 381 | WP_001204809.1 | antitermination protein Q | - |
| C6P55_RS03450 () | 616712..616909 | + | 198 | WP_000917741.1 | hypothetical protein | - |
| C6P55_RS03455 () | 617061..618119 | + | 1059 | WP_000483505.1 | site-specific DNA-methyltransferase | - |
| C6P55_RS03475 () | 618502..619461 | + | 960 | WP_001365055.1 | HTH-type transcriptional regulator DmlR | VF |
| C6P55_RS03480 () | 619473..619742 | + | 270 | WP_000738080.1 | L-methionine gamma-lyase | VF |
| C6P55_RS03490 () | 620253..622199 | + | 1947 | WP_096071282.1 | DUF1737 domain-containing protein | - |
| C6P55_RS03495 () | 622336..622515 | + | 180 | WP_000142777.1 | DUF1378 family protein | - |
| C6P55_RS03500 () | 622556..622828 | + | 273 | WP_001290217.1 | DUF826 domain-containing protein | - |
| C6P55_RS03505 () | 622905..623120 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| C6P55_RS03510 () | 623125..623658 | + | 534 | WP_048227790.1 | lysozyme | - |
| C6P55_RS31160 () | 623655..624122 | + | 468 | WP_001255342.1 | lysis protein | - |
| C6P55_RS03520 () | 624146..624370 | + | 225 | WP_000735655.1 | hypothetical protein | - |
| C6P55_RS03530 () | 624790..625266 | + | 477 | WP_000373410.1 | DUF1441 family protein | - |
| C6P55_RS03535 () | 625263..627386 | + | 2124 | WP_033803518.1 | phage terminase large subunit family protein | - |
| C6P55_RS03540 () | 627383..627595 | + | 213 | WP_000102415.1 | hypothetical protein | - |
| C6P55_RS03545 () | 627595..629097 | + | 1503 | WP_000974568.1 | phage portal protein | - |
| C6P55_RS03550 () | 629042..631066 | + | 2025 | WP_001114424.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| C6P55_RS03555 () | 631154..631480 | + | 327 | WP_001097065.1 | DUF2190 family protein | - |
| C6P55_RS03560 () | 631473..631754 | + | 282 | WP_001281350.1 | DNA breaking-rejoining protein | - |
| C6P55_RS03565 () | 631757..632380 | + | 624 | WP_033803517.1 | phage tail protein | - |
| C6P55_RS03570 () | 632393..632791 | + | 399 | WP_000682716.1 | tail protein | - |
| C6P55_RS03575 () | 632799..633551 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C6P55_RS03580 () | 633565..633987 | + | 423 | WP_000479061.1 | phage minor tail protein G | - |
| C6P55_RS03585 () | 634014..634322 | + | 309 | WP_000532073.1 | phage tail assembly protein T | - |
| C6P55_RS03590 () | 634366..637011 | + | 2646 | WP_000918270.1 | phage tail tape measure protein | - |
| C6P55_RS03595 () | 637008..637337 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C6P55_RS03600 () | 637337..638035 | + | 699 | WP_096071284.1 | phage minor tail protein L | - |
| C6P55_RS03605 () | 638041..638783 | + | 743 | Protein_658 | C40 family peptidase | - |
| C6P55_RS03610 () | 638729..639361 | + | 633 | WP_137591927.1 | tail assembly protein | - |
| C6P55_RS03615 () | 639704..643195 | + | 3492 | WP_106912640.1 | host specificity protein J | - |
| C6P55_RS03620 () | 643266..643865 | + | 600 | WP_001230468.1 | hypothetical protein | VF |
| C6P55_RS03625 () | 643930..645243 | + | 1314 | WP_096079837.1 | ISNCY family transposase KIS | Transposase |
| C6P55_RS03630 () | 645245..645514 | + | 270 | WP_096079836.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6P55_RS03640 () | 645918..646931 | + | 1014 | WP_122993326.1 | hypothetical protein | VF |
| C6P55_RS03645 () | 647303..647551 | - | 249 | WP_001261931.1 | DinI-like family protein | - |
| C6P55_RS03650 () | 647869..648435 | - | 567 | WP_000891621.1 | hydrolase | - |
| C6P55_RS03655 () | 648745..650517 | + | 1773 | WP_001258678.1 | aspartate--tRNA ligase | - |
| C6P55_RS03660 () | 650635..651087 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| C6P55_RS03665 () | 651116..651856 | + | 741 | WP_000907234.1 | transcriptional regulatory protein YebC | VF |
| C6P55_RS03670 () | 651891..652412 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| C6P55_RS03675 () | 652414..653016 | - | 603 | WP_001024904.1 | YebB family permuted papain-like enzyme | - |
| C6P55_RS03680 () | 653087..653152 | + | 66 | WP_072094247.1 | stress response small protein YobI | - |
| C6P55_RS03685 () | 653291..653902 | + | 612 | WP_000580327.1 | Holliday junction branch migration protein RuvA | - |
| C6P55_RS03690 () | 653911..654921 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C6P55_RS03695 () | 655068..655853 | - | 786 | WP_000571479.1 | hypothetical protein | VF |
| C6P55_RS03700 () | 655850..656605 | - | 756 | WP_000202990.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C6P55_RS03705 () | 656684..657616 | + | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C6P55_RS03710 () | 657632..658954 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| C6P55_RS03715 () | 659074..660045 | + | 972 | WP_000448381.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| C6P55_RS03720 () | 660177..661619 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| C6P55_RS03725 () | 661747..662616 | - | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| C6P55_RS03730 () | 662954..664429 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| C6P55_RS03735 () | 664664..666475 | + | 1812 | WP_096969936.1 | phosphogluconate dehydratase | - |
| C6P55_RS03740 () | 666512..667153 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C6P55_RS03745 () | 667209..668387 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6P55_RS03750 () | 668521..668811 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6P55_RS03755 () | 668878..669234 | + | 357 | WP_001295500.1 | protein YebF | - |
| C6P55_RS03760 () | 669561..670220 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6P55_RS03765 () | 670429..672489 | + | 2061 | WP_000936952.1 | oligopeptidase B | - |
| C6P55_RS03770 () | 672486..673148 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P55_RS03775 () | 673172..673828 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P55_RS03780 () | 673930..674160 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P55_RS03785 () | 674299..674673 | + | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| C6P55_RS03790 () | 674677..675549 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| C6P55_RS03795 () | 675562..675903 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - () | 675931..676202 | - | 272 | - | - | Antitoxin Detail |
| - () | 676061..676164 | + | 104 | - | - | Toxin Detail |
| C6P55_RS03800 () | 676299..676955 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| C6P55_RS03805 () | 676956..677147 | - | 192 | WP_001313035.1 | YebW family protein | - |
| C6P55_RS03810 () | 677252..677488 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P55_RS03815 () | 677606..679045 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6P55_RS03820 () | 679125..681758 | - | 2634 | WP_001295498.1 | 3'3'-cGAMP-specific phosphodiesterase 2 | VF |
| C6P55_RS03825 () | 681727..683010 | - | 1284 | WP_001207283.1 | membrane integrity lipid transport subunit YebS | - |
| C6P55_RS03830 () | 683140..683637 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C6P55_RS03835 () | 683734..684432 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C6P55_RS03840 () | 684452..686500 | + | 2049 | WP_001055778.1 | carboxy terminal-processing peptidase | - |
| C6P55_RS03845 () | 686692..687573 | + | 882 | WP_000984517.1 | protease HtpX | - |
| C6P55_RS03850 () | 687619..688978 | - | 1360 | Protein_706 | MFS transporter | - |
| C6P55_RS03855 () | 689155..689946 | + | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| C6P55_RS03860 () | 690089..690328 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| C6P55_RS03865 () | 690487..690630 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C6P55_RS03870 () | 690705..690992 | + | 288 | WP_001006866.1 | YebO family protein | - |
| C6P55_RS03880 () | 691661..691804 | + | 144 | WP_001295496.1 | YobF family protein | - |
| C6P55_RS03885 () | 691817..692026 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C6P55_RS03890 () | 692192..693001 | + | 810 | WP_033803283.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C6P55_RS03895 () | 692998..693570 | - | 573 | WP_001295495.1 | manganese efflux pump MntP | - |
| C6P55_RS03905 () | 693999..694457 | - | 459 | WP_000156256.1 | DUF986 family protein | - |
| C6P55_RS03910 () | 694512..695363 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| C6P55_RS03915 () | 695376..696176 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|