Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 675931..676202 | Replicon | chromosome |
| Accession | NZ_CP027355 | ||
| Organism | Escherichia coli strain 2013C-4991 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 676061..676164 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 675931..676202 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P55_RS03770 | 672486..673148 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6P55_RS03775 | 673172..673828 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6P55_RS03780 | 673930..674160 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6P55_RS03785 | 674299..674673 | + | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| C6P55_RS03790 | 674677..675549 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| C6P55_RS03795 | 675562..675903 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 675931..676202 | - | 272 | - | - | Antitoxin |
| - | 676061..676164 | + | 104 | - | - | Toxin |
| C6P55_RS03800 | 676299..676955 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| C6P55_RS03805 | 676956..677147 | - | 192 | WP_001313035.1 | YebW family protein | - |
| C6P55_RS03810 | 677252..677488 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6P55_RS03815 | 677606..679045 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | stx2A / stx2B / nleC | 603566..692026 | 88460 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T98251 NZ_CP027355:676061-676164 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT98251 NZ_CP027355:c676202-675931 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
