MGE detailed information
MGE type: Prophage MGE length: 88857 bp
Accession: NZ_CP027352 Location: 83..88939 Organism: Escherichia coli strain 2012C-4606 Replicon: chromosome
Accession: NZ_CP027352 Location: 83..88939 Organism: Escherichia coli strain 2012C-4606 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYN42_RS00015 () | 1989..2207 | + | 219 | WP_106875242.1 | class II holin family protein | - |
| AYN42_RS00020 () | 2456..2728 | - | 273 | WP_000138558.1 | hypothetical protein | - |
| AYN42_RS00030 () | 2888..3421 | + | 534 | WP_001003118.1 | lysozyme | - |
| AYN42_RS00035 () | 3642..3755 | + | 114 | WP_000675931.1 | hypothetical protein | - |
| AYN42_RS31075 () | 3977..4162 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| AYN42_RS00050 () | 4689..5003 | + | 315 | WP_001303878.1 | PerC family transcriptional regulator | - |
| AYN42_RS00055 () | 5085..5309 | - | 225 | WP_001300236.1 | YlcI/YnfO family protein | - |
| AYN42_RS00060 () | 5706..6251 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| AYN42_RS00065 () | 6226..8151 | + | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| AYN42_RS00070 () | 8148..8354 | + | 207 | WP_000198153.1 | gpW family protein | - |
| AYN42_RS00075 () | 8351..9952 | + | 1602 | WP_001415980.1 | phage portal protein | - |
| AYN42_RS00080 () | 9933..11252 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| AYN42_RS00085 () | 11262..11594 | + | 333 | WP_001365129.1 | head decoration protein | - |
| AYN42_RS00090 () | 11650..12675 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| AYN42_RS00095 () | 12717..13112 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| AYN42_RS00100 () | 13124..13477 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| AYN42_RS00105 () | 13489..14043 | + | 555 | Protein_17 | phage tail protein | - |
| AYN42_RS00110 () | 14056..14449 | + | 394 | Protein_18 | phage tail protein | - |
| AYN42_RS00115 () | 14457..15209 | + | 753 | WP_106875216.1 | Ig domain-containing protein | - |
| AYN42_RS00120 () | 15223..15645 | + | 423 | WP_000479045.1 | phage minor tail protein G | - |
| AYN42_RS00125 () | 15672..16085 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| AYN42_RS00130 () | 16066..18678 | + | 2613 | WP_106875217.1 | phage tail tape measure protein | - |
| AYN42_RS00135 () | 18675..19004 | + | 330 | WP_000847298.1 | phage tail protein | - |
| AYN42_RS00140 () | 19004..19702 | + | 699 | WP_001357740.1 | phage minor tail protein L | - |
| AYN42_RS00145 () | 19713..20456 | + | 744 | WP_000194802.1 | C40 family peptidase | - |
| AYN42_RS00150 () | 20402..21034 | + | 633 | WP_133253573.1 | tail assembly protein | - |
| AYN42_RS00155 () | 21280..24756 | + | 3477 | WP_000515131.1 | host specificity protein J | - |
| AYN42_RS00160 () | 24825..25448 | + | 624 | WP_001456919.1 | Attachment invasion locus protein | VF |
| AYN42_RS00165 () | 25513..26826 | + | 1314 | WP_000279009.1 | ISNCY family transposase KIS | Transposase |
| AYN42_RS00170 () | 26828..27097 | + | 270 | WP_001023433.1 | phage tail fiber C-terminal domain-containing protein | - |
| AYN42_RS00180 () | 27500..28513 | + | 1014 | WP_122993102.1 | hypothetical protein | VF |
| AYN42_RS00190 () | 28884..29126 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| AYN42_RS00195 () | 29304..29570 | - | 267 | Protein_33 | Putative defective protein IntQ ; Integrase | Integrase |
| AYN42_RS00200 () | 29634..30790 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| AYN42_RS00205 () | 30787..31851 | - | 1065 | WP_000877010.1 | IS91 family transposase ISTha3 | Transposase |
| AYN42_RS00210 () | 31886..32116 | - | 231 | Protein_36 | excisionase family protein | - |
| AYN42_RS00215 () | 32106..32783 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| AYN42_RS00220 () | 32783..33130 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| AYN42_RS00225 () | 33150..34721 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| AYN42_RS00230 () | 34752..34844 | - | 93 | Protein_40 | excisionase family protein | - |
| AYN42_RS00235 () | 34917..37388 | - | 2472 | WP_000048369.1 | exonuclease | - |
| AYN42_RS00240 () | 37482..37673 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| AYN42_RS00245 () | 37670..37858 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AYN42_RS00250 () | 38345..38920 | - | 576 | WP_000347171.1 | hypothetical protein | - |
| AYN42_RS00255 () | 38922..39077 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| AYN42_RS00260 () | 39270..39677 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| AYN42_RS00265 () | 39755..39982 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| AYN42_RS00270 () | 39966..40487 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| AYN42_RS00275 () | 40468..41433 | + | 966 | WP_000054507.1 | hypothetical protein | - |
| AYN42_RS00280 () | 41474..41893 | + | 420 | WP_001151195.1 | DUF977 family protein | - |
| AYN42_RS00285 () | 41927..43267 | + | 1341 | WP_000589012.1 | ISNCY family transposase ISCARN112 | Transposase |
| AYN42_RS00290 () | 43704..44036 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| AYN42_RS00295 () | 44239..44544 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| AYN42_RS00300 () | 44569..44808 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AYN42_RS00305 () | 44808..45095 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AYN42_RS00310 () | 45167..45322 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AYN42_RS00315 () | 45539..45790 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| AYN42_RS00320 () | 45857..46135 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AYN42_RS00325 () | 46137..47186 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AYN42_RS00330 () | 47200..47952 | + | 753 | WP_001047133.1 | antitermination protein | - |
| AYN42_RS31090 () | 48230..48319 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AYN42_RS00335 () | 48374..48586 | - | 213 | WP_106875218.1 | cold shock-like protein CspF | - |
| AYN42_RS00340 () | 48887..49102 | + | 216 | WP_000066483.1 | cold shock-like protein CspB | - |
| AYN42_RS31735 () | 49466..49636 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| AYN42_RS00345 () | 49856..50071 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AYN42_RS00350 () | 50076..50387 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| AYN42_RS00355 () | 50384..50917 | + | 534 | WP_001092971.1 | lysozyme | - |
| AYN42_RS00360 () | 50914..51411 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AYN42_RS00365 () | 51774..51986 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AYN42_RS00370 () | 51997..52185 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| AYN42_RS31095 () | 52188..52253 | + | 66 | WP_122134696.1 | hypothetical protein | - |
| AYN42_RS31100 () | 52333..52488 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| AYN42_RS00380 () | 52660..52833 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| AYN42_RS00385 () | 52985..53395 | - | 411 | WP_000035577.1 | DUF1398 domain-containing protein | - |
| AYN42_RS00395 () | 53696..53902 | + | 207 | WP_001031435.1 | hypothetical protein | - |
| AYN42_RS00400 () | 54463..55002 | + | 540 | WP_000421825.1 | DUF1441 family protein | - |
| AYN42_RS00405 () | 55011..57110 | + | 2100 | WP_000507036.1 | phage terminase large subunit family protein | - |
| AYN42_RS00410 () | 57107..57319 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| AYN42_RS00415 () | 57319..58827 | + | 1509 | WP_000985929.1 | phage portal protein | - |
| AYN42_RS00420 () | 58772..60799 | + | 2028 | WP_001136588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| AYN42_RS00425 () | 60886..61209 | + | 324 | WP_001097041.1 | DUF2190 family protein | - |
| AYN42_RS00430 () | 61202..61477 | + | 276 | WP_001283148.1 | DNA breaking-rejoining protein | - |
| AYN42_RS00435 () | 61489..62067 | + | 579 | WP_000677128.1 | phage tail protein | - |
| AYN42_RS00440 () | 62064..62465 | + | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| AYN42_RS00445 () | 62476..63219 | + | 744 | WP_000211132.1 | Ig domain-containing protein | - |
| AYN42_RS00450 () | 63280..63666 | + | 387 | WP_001341514.1 | phage minor tail protein G | - |
| AYN42_RS00455 () | 63675..64004 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| AYN42_RS00460 () | 63976..67041 | + | 3066 | WP_000372024.1 | phage tail tape measure protein | - |
| AYN42_RS00465 () | 67041..67370 | + | 330 | WP_000447251.1 | phage tail protein | - |
| AYN42_RS00470 () | 67380..68078 | + | 699 | WP_001152371.1 | phage minor tail protein L | - |
| AYN42_RS00475 () | 68083..68826 | + | 744 | WP_000140707.1 | C40 family peptidase | - |
| AYN42_RS00480 () | 68724..69371 | + | 648 | WP_000741589.1 | tail assembly protein | - |
| AYN42_RS00485 () | 69432..72845 | + | 3414 | WP_000515505.1 | host specificity protein J | - |
| AYN42_RS00490 () | 72916..73515 | + | 600 | WP_001233114.1 | Outer membrane protein X | VF |
| AYN42_RS00495 () | 73580..76540 | + | 2961 | WP_001448491.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AYN42_RS00500 () | 76540..77115 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| AYN42_RS00505 () | 77213..77803 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AYN42_RS00510 () | 78120..78353 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AYN42_RS31105 () | 78422..78535 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| AYN42_RS00520 () | 79138..80421 | + | 1284 | Protein_100 | MHS family MFS transporter YdfJ | - |
| AYN42_RS00525 () | 80510..81970 | + | 1461 | Protein_101 | mannitol dehydrogenase family protein | - |
| AYN42_RS00530 () | 82006..82209 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AYN42_RS00535 () | 82387..83073 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| AYN42_RS00540 () | 83162..83908 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| AYN42_RS00550 () | 84045..86090 | + | 2046 | WP_001341522.1 | peptidyl-dipeptidase Dcp | - |
| AYN42_RS00560 () | 86135..86653 | - | 519 | WP_001024559.1 | 2-oxo-tetronate isomerase | - |
| AYN42_RS00565 () | 86929..87321 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| AYN42_RS00570 () | 87576..88187 | + | 612 | Protein_108 | diguanylate cyclase DgcZ | - |
| AYN42_RS00575 () | 88242..88939 | + | 698 | Protein_109 | IS1 family transposase | - |
| AYN42_RS00580 () | 88952..89242 | + | 291 | Protein_110 | diguanylate cyclase DgcZ | - |
| AYN42_RS31740 () | 89357..89461 | - | 105 | WP_211180496.1 | protein MgtT | - |
| AYN42_RS00585 () | 89461..89556 | - | 96 | WP_000901367.1 | protein MgtS | - |
| AYN42_RS00590 () | 89683..90870 | - | 1188 | WP_001054196.1 | efflux MFS transporter YdeE | - |
| AYN42_RS00595 () | 91065..91964 | + | 900 | WP_000087216.1 | O-acetylserine/cysteine exporter | - |
| AYN42_RS00600 () | 92009..92707 | - | 699 | WP_000577179.1 | GntR family transcriptional regulator | - |
| AYN42_RS00605 () | 92906..93217 | + | 312 | WP_000722571.1 | PTS sugar transporter subunit IIB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|