MGE detailed information
MGE type: Prophage MGE length: 59378 bp
Accession: NZ_CP027338 Location: 1549721..1609098 Organism: Escherichia coli strain 2014C-3051 Replicon: chromosome
Accession: NZ_CP027338 Location: 1549721..1609098 Organism: Escherichia coli strain 2014C-3051 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N28_RS08875 () | 1544979..1547027 | - | 2049 | WP_001427396.1 | carboxy terminal-processing peptidase | - |
| C6N28_RS08880 () | 1547047..1547745 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C6N28_RS08885 () | 1547842..1548339 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C6N28_RS08890 () | 1548469..1549752 | + | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| C6N28_RS08895 () | 1549721..1552354 | + | 2634 | WP_001299674.1 | hypothetical protein | VF |
| C6N28_RS08900 () | 1552434..1553873 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C6N28_RS08905 () | 1553991..1554227 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C6N28_RS08910 () | 1554332..1554523 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C6N28_RS08915 () | 1554524..1555180 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C6N28_RS08920 () | 1555865..1556131 | + | 267 | Protein_1631 | hypothetical protein | - |
| C6N28_RS30940 () | 1556135..1556785 | + | 651 | WP_001121225.1 | hypothetical protein | VF |
| C6N28_RS08935 () | 1557010..1557885 | - | 876 | WP_000491545.1 | hypothetical protein | VF |
| C6N28_RS08940 () | 1558026..1558295 | - | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6N28_RS08945 () | 1558297..1559610 | - | 1314 | WP_032325224.1 | ISNCY family transposase KIS | Transposase |
| C6N28_RS08950 () | 1559675..1560274 | - | 600 | WP_001230428.1 | Outer membrane protein X | VF |
| C6N28_RS08955 () | 1560342..1563734 | - | 3393 | WP_106889281.1 | host specificity protein J | - |
| C6N28_RS08960 () | 1563980..1564612 | - | 633 | WP_136865658.1 | tail assembly protein | - |
| C6N28_RS08965 () | 1564558..1565301 | - | 744 | WP_032325227.1 | C40 family peptidase | - |
| C6N28_RS08970 () | 1565312..1566010 | - | 699 | WP_001152185.1 | phage minor tail protein L | - |
| C6N28_RS08975 () | 1566010..1566339 | - | 330 | WP_000847302.1 | phage tail protein | - |
| C6N28_RS08980 () | 1566336..1568915 | - | 2580 | WP_106889282.1 | phage tail tape measure protein | - |
| C6N28_RS08985 () | 1568896..1569309 | - | 414 | WP_000533431.1 | phage tail assembly protein T | - |
| C6N28_RS08990 () | 1569336..1569767 | - | 432 | WP_000479086.1 | phage minor tail protein G | - |
| C6N28_RS08995 () | 1569781..1570533 | - | 753 | WP_032325228.1 | phage tail protein | - |
| C6N28_RS09000 () | 1570541..1570936 | - | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| C6N28_RS09005 () | 1570933..1571511 | - | 579 | WP_000975096.1 | phage tail protein | - |
| C6N28_RS09010 () | 1571523..1571876 | - | 354 | WP_000752994.1 | head-tail joining protein | - |
| C6N28_RS09015 () | 1571888..1572283 | - | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| C6N28_RS09020 () | 1572325..1573350 | - | 1026 | WP_000063258.1 | major capsid protein | - |
| C6N28_RS09025 () | 1573406..1573738 | - | 333 | WP_001365129.1 | head decoration protein | - |
| C6N28_RS09030 () | 1573748..1575067 | - | 1320 | WP_000123251.1 | S49 family peptidase | - |
| C6N28_RS09035 () | 1575048..1576649 | - | 1602 | WP_001443752.1 | phage portal protein | - |
| C6N28_RS09040 () | 1576646..1576852 | - | 207 | WP_000198153.1 | gpW family protein | - |
| C6N28_RS09045 () | 1576849..1578774 | - | 1926 | Protein_1655 | phage terminase large subunit family protein | - |
| C6N28_RS09050 () | 1578749..1579294 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| C6N28_RS09060 () | 1579683..1579877 | + | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| C6N28_RS09070 () | 1580065..1580682 | - | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| C6N28_RS09075 () | 1580832..1581269 | - | 438 | WP_000092325.1 | lysis protein | - |
| C6N28_RS09080 () | 1581266..1581763 | - | 498 | WP_000075132.1 | lysozyme RrrD | - |
| C6N28_RS09085 () | 1581763..1581978 | - | 216 | WP_024164617.1 | class II holin family protein | - |
| C6N28_RS09095 () | 1582417..1584267 | - | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| C6N28_RS09100 () | 1584589..1584841 | - | 253 | Protein_1663 | DUF3927 family protein | - |
| C6N28_RS09105 () | 1584838..1585200 | - | 363 | Protein_1664 | tellurite resistance TerB family protein | - |
| C6N28_RS09110 () | 1585438..1586259 | - | 822 | WP_000762928.1 | antitermination protein | - |
| C6N28_RS09115 () | 1586256..1586630 | - | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6N28_RS09120 () | 1586643..1587692 | - | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C6N28_RS09125 () | 1587694..1587966 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| C6N28_RS09130 () | 1588088..1588432 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C6N28_RS09135 () | 1588552..1588707 | - | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6N28_RS09140 () | 1588998..1589555 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| C6N28_RS09145 () | 1589557..1589775 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C6N28_RS09150 () | 1589903..1590214 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| C6N28_RS09155 () | 1590207..1590434 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| C6N28_RS09160 () | 1590431..1590712 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| C6N28_RS09165 () | 1590745..1591506 | - | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| C6N28_RS09170 () | 1591532..1592273 | - | 742 | Protein_1677 | ATP-binding protein | - |
| C6N28_RS09175 () | 1592280..1593242 | - | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| C6N28_RS09180 () | 1593265..1593690 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C6N28_RS09185 () | 1593687..1593989 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| C6N28_RS09190 () | 1594087..1594458 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| C6N28_RS09195 () | 1594479..1594670 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C6N28_RS09200 () | 1594672..1594950 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6N28_RS09205 () | 1595237..1595389 | + | 153 | WP_001427316.1 | DUF1391 family protein | - |
| C6N28_RS09210 () | 1595810..1596031 | + | 222 | WP_000560218.1 | killing protein KilR | - |
| C6N28_RS09215 () | 1596025..1596201 | + | 177 | WP_000245534.1 | hypothetical protein | - |
| C6N28_RS09220 () | 1596275..1596550 | + | 276 | WP_001307773.1 | hypothetical protein | - |
| C6N28_RS09225 () | 1596649..1598478 | + | 1830 | Protein_1688 | exonuclease VIII | - |
| C6N28_RS09235 () | 1599740..1600567 | + | 828 | Protein_1690 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| C6N28_RS09240 () | 1600560..1601369 | + | 810 | WP_000166317.1 | recombination protein RecT | - |
| C6N28_RS09245 () | 1601426..1601620 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| C6N28_RS09250 () | 1601613..1601801 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1601619..1601797 | - | 179 | NuclAT_1 | - | - |
| - () | 1601619..1601797 | - | 179 | NuclAT_1 | - | - |
| - () | 1601619..1601797 | - | 179 | NuclAT_1 | - | - |
| - () | 1601619..1601797 | - | 179 | NuclAT_1 | - | - |
| C6N28_RS09255 () | 1601908..1602189 | + | 282 | WP_001443927.1 | excisionase | - |
| C6N28_RS09260 () | 1602155..1603231 | + | 1077 | WP_106889283.1 | hypothetical protein ; Integrase | Integrase |
| - () | 1603362..1603596 | + | 235 | - | - | Antitoxin Detail |
| - () | 1603363..1603466 | - | 104 | - | - | Toxin Detail |
| C6N28_RS09265 () | 1603624..1603965 | - | 342 | WP_000976492.1 | YebY family protein | - |
| C6N28_RS09270 () | 1603978..1604850 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| C6N28_RS09275 () | 1604854..1605228 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| C6N28_RS09280 () | 1605367..1605597 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C6N28_RS09285 () | 1605699..1606355 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C6N28_RS09290 () | 1606379..1607041 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C6N28_RS09295 () | 1607038..1609098 | - | 2061 | WP_000936951.1 | oligopeptidase B | - |
| C6N28_RS09300 () | 1609307..1609966 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C6N28_RS09305 () | 1610293..1610649 | - | 357 | WP_001295500.1 | protein YebF | - |
| C6N28_RS09310 () | 1610716..1611006 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C6N28_RS09315 () | 1611140..1612318 | + | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C6N28_RS09320 () | 1612374..1613015 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|