MGE detailed information
MGE type: Prophage MGE length: 61241 bp
Accession: NZ_CP027307 Location: 1946686..2007926 Organism: Escherichia coli strain 2015C-3108 Replicon: chromosome
Accession: NZ_CP027307 Location: 1946686..2007926 Organism: Escherichia coli strain 2015C-3108 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N27_RS10505 () | 1942860..1944089 | - | 1230 | WP_000359442.1 | peptidase T | - |
| C6N27_RS10515 () | 1944339..1945475 | + | 1137 | WP_000531601.1 | spermidine/putrescine ABC transporter ATP-binding protein PotA | - |
| C6N27_RS10520 () | 1945459..1946322 | + | 864 | WP_000799400.1 | spermidine/putrescine ABC transporter permease PotB | - |
| C6N27_RS10530 () | 1946686..1948047 | + | 1362 | WP_000938117.1 | hypothetical protein | VF |
| C6N27_RS10535 () | 1948108..1948383 | + | 276 | WP_001303921.1 | hypothetical protein | - |
| C6N27_RS10540 () | 1948463..1948576 | - | 114 | Protein_1956 | non-LEE encoded effector protein NleB | - |
| C6N27_RS30275 () | 1948611..1948829 | - | 219 | Protein_1957 | IS256 family transposase ISSoEn2 | Transposase |
| C6N27_RS30280 () | 1948829..1948981 | + | 153 | Protein_1958 | IS256 family transposase ISSoEn2 | Transposase |
| C6N27_RS10550 () | 1949358..1952759 | - | 3402 | WP_001369471.1 | hypothetical protein | VF |
| C6N27_RS10555 () | 1953350..1955698 | - | 2349 | WP_001301673.1 | E3 ubiquitin-protein ligase SopA | VF |
| C6N27_RS29895 () | 1955718..1955807 | - | 90 | WP_115801847.1 | hypothetical protein | - |
| C6N27_RS29900 () | 1955820..1955912 | - | 93 | Protein_1962 | tail assembly protein | - |
| C6N27_RS10560 () | 1955914..1956183 | - | 270 | WP_001023356.1 | phage tail fiber C-terminal domain-containing protein | - |
| C6N27_RS10565 () | 1956185..1957507 | - | 1323 | WP_000268887.1 | ISNCY family transposase KIS | Transposase |
| C6N27_RS10570 () | 1957572..1958171 | - | 600 | WP_001230459.1 | Outer membrane protein X | VF |
| C6N27_RS10575 () | 1958238..1961717 | - | 3480 | WP_106895296.1 | host specificity protein J | - |
| C6N27_RS10580 () | 1961964..1962596 | - | 633 | WP_122996286.1 | tail assembly protein | - |
| C6N27_RS10585 () | 1962542..1963279 | - | 738 | WP_000967279.1 | C40 family peptidase | - |
| C6N27_RS10590 () | 1963334..1964256 | - | 923 | Protein_1969 | phage antirepressor Ant | - |
| C6N27_RS10595 () | 1964327..1964500 | - | 174 | WP_001154345.1 | Arc family DNA-binding protein | - |
| C6N27_RS10600 () | 1964608..1964928 | + | 321 | WP_001302649.1 | Arc family DNA-binding protein | - |
| C6N27_RS10605 () | 1964945..1965643 | - | 699 | WP_001447444.1 | phage minor tail protein L | - |
| C6N27_RS10610 () | 1965643..1965984 | - | 342 | WP_000807928.1 | phage tail protein | - |
| C6N27_RS10615 () | 1965977..1969219 | - | 3243 | WP_000212932.1 | phage tail tape measure protein | - |
| C6N27_RS10620 () | 1969271..1969480 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C6N27_RS10625 () | 1969576..1969950 | - | 375 | WP_001030042.1 | phage tail assembly chaperone | - |
| C6N27_RS10630 () | 1969956..1970672 | - | 717 | WP_001275472.1 | tail protein | - |
| C6N27_RS10635 () | 1970739..1971083 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C6N27_RS10640 () | 1971080..1971526 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C6N27_RS10645 () | 1971523..1971873 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| C6N27_RS10650 () | 1971883..1972209 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| C6N27_RS10655 () | 1972206..1974952 | - | 2747 | Protein_1982 | phage portal protein | - |
| C6N27_RS10660 () | 1974898..1975119 | - | 222 | WP_001063099.1 | hypothetical protein | - |
| C6N27_RS10665 () | 1975164..1977101 | - | 1938 | WP_000172984.1 | phage major capsid protein | - |
| C6N27_RS10670 () | 1977165..1978826 | - | 1662 | WP_001369319.1 | terminase large subunit | - |
| C6N27_RS10675 () | 1978823..1979386 | - | 564 | WP_000958415.1 | terminase small subunit | - |
| C6N27_RS10685 () | 1979677..1980042 | - | 366 | WP_000279788.1 | HNH endonuclease | - |
| C6N27_RS10690 () | 1980084..1980311 | + | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C6N27_RS29905 () | 1980736..1980921 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C6N27_RS29915 () | 1981149..1981295 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| C6N27_RS10700 () | 1981295..1981864 | - | 570 | WP_001056806.1 | hypothetical protein | - |
| C6N27_RS10705 () | 1982135..1982668 | - | 534 | WP_000992167.1 | lysozyme | - |
| C6N27_RS10710 () | 1982719..1983063 | - | 345 | WP_000731236.1 | YdfR family protein | - |
| C6N27_RS10715 () | 1983068..1983283 | - | 216 | WP_024164617.1 | class II holin family protein | - |
| C6N27_RS10725 () | 1983722..1985572 | - | 1851 | WP_000874287.1 | DUF1737 domain-containing protein | - |
| C6N27_RS10745 () | 1986369..1987427 | - | 1059 | WP_000935544.1 | site-specific DNA-methyltransferase | - |
| C6N27_RS29920 () | 1987578..1987775 | - | 198 | WP_000917750.1 | hypothetical protein | - |
| C6N27_RS10755 () | 1988017..1988547 | - | 531 | WP_000640048.1 | DUF1133 family protein | - |
| C6N27_RS10760 () | 1988556..1988921 | - | 366 | WP_000140024.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C6N27_RS10765 () | 1988922..1989977 | - | 1056 | WP_001369253.1 | DUF968 domain-containing protein | - |
| C6N27_RS10770 () | 1989979..1990251 | - | 273 | WP_012817871.1 | hypothetical protein | - |
| C6N27_RS10780 () | 1990419..1990559 | - | 141 | WP_072058819.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6N27_RS10785 () | 1990597..1991810 | + | 1214 | WP_162829202.1 | IS3 family transposase IS1203 | Transposase |
| C6N27_RS10790 () | 1991850..1992266 | - | 417 | WP_023981635.1 | DUF977 family protein | - |
| C6N27_RS10795 () | 1992307..1993269 | - | 963 | WP_000095671.1 | helix-turn-helix domain-containing protein | - |
| C6N27_RS10800 () | 1993292..1993717 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C6N27_RS10805 () | 1993714..1994016 | - | 303 | WP_001444689.1 | transcriptional regulator | - |
| C6N27_RS10810 () | 1994114..1994485 | + | 372 | WP_001169687.1 | hypothetical protein | - |
| C6N27_RS10815 () | 1994506..1994697 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C6N27_RS10820 () | 1994699..1994977 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6N27_RS10830 () | 1995273..1995662 | + | 390 | WP_001447517.1 | hypothetical protein | - |
| C6N27_RS10835 () | 1995703..1995921 | + | 219 | WP_001171930.1 | hypothetical protein | - |
| C6N27_RS10845 () | 1996405..1996593 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C6N27_RS10850 () | 1996590..1996781 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C6N27_RS10855 () | 1996874..1999339 | + | 2466 | WP_106895297.1 | exonuclease | - |
| C6N27_RS10860 () | 1999401..1999670 | + | 270 | WP_000003742.1 | excisionase | - |
| C6N27_RS10865 () | 1999639..2000757 | + | 1119 | WP_000074981.1 | hypothetical protein ; Integrase | Integrase |
| C6N27_RS10870 () | 2000924..2001718 | + | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| C6N27_RS10875 () | 2001715..2002761 | + | 1047 | WP_000759338.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| C6N27_RS10880 () | 2002819..2003280 | + | 462 | WP_001341497.1 | DUF3592 domain-containing protein | - |
| C6N27_RS10885 () | 2003277..2004065 | + | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| C6N27_RS10890 () | 2004204..2005025 | - | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| C6N27_RS10895 () | 2005041..2005952 | - | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| C6N27_RS10900 () | 2005981..2007225 | - | 1245 | WP_001251348.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| C6N27_RS10905 () | 2007225..2007926 | - | 702 | WP_001033694.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| C6N27_RS10910 () | 2007919..2009118 | - | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
| C6N27_RS10915 () | 2009380..2010453 | + | 1074 | WP_000810250.1 | acyltransferase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|