MGE detailed information
MGE type: Conjugative plasmid MGE length: 103336 bp
Accession: NZ_CP027256 Location: 1..103336 Organism: Escherichia coli strain EC11 Replicon: plasmid unnamed1
Accession: NZ_CP027256 Location: 1..103336 Organism: Escherichia coli strain EC11 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6C13_RS25500 () | 210..497 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| C6C13_RS25505 () | 616..1437 | + | 822 | WP_001234474.1 | DUF945 domain-containing protein | - |
| C6C13_RS25510 () | 1732..2322 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| C6C13_RS25515 () | 2655..3038 | + | 384 | WP_001151527.1 | relaxosome protein TraM | - |
| C6C13_RS25520 () | 3225..3914 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| C6C13_RS25525 () | 4013..4408 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| C6C13_RS25530 () | 4441..4806 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| C6C13_RS25535 () | 4821..5132 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C6C13_RS25540 () | 5154..5720 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| C6C13_RS25545 () | 5731..6435 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C6C13_RS25550 () | 6435..7862 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| C6C13_RS25555 () | 7852..8442 | + | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| C6C13_RS25560 () | 8396..8626 | + | 231 | WP_071587746.1 | conjugal transfer protein TrbD | - |
| C6C13_RS25565 () | 8638..8889 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| C6C13_RS25570 () | 8886..9401 | + | 516 | WP_000809843.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6C13_RS25575 () | 9536..9757 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| C6C13_RS25580 () | 9917..12544 | + | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| C6C13_RS25585 () | 12541..12927 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| C6C13_RS25590 () | 12924..13556 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| C6C13_RS25595 () | 13553..14545 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| C6C13_RS25600 () | 14554..15192 | + | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6C13_RS25605 () | 15189..16997 | + | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6C13_RS25610 () | 17024..17281 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| C6C13_RS25615 () | 17274..18017 | + | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6C13_RS25620 () | 18033..18380 | + | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| C6C13_RS25625 () | 18382..18696 | - | 315 | WP_000415566.1 | protein ArtA | - |
| C6C13_RS25630 () | 18777..19061 | + | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6C13_RS25635 () | 19048..19593 | + | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6C13_RS25640 () | 19523..19864 | + | 342 | WP_106023000.1 | P-type conjugative transfer protein TrbJ | - |
| C6C13_RS25645 () | 19818..20231 | + | 414 | WP_001331260.1 | F-type conjugal transfer protein TrbF | - |
| C6C13_RS25650 () | 20231..21604 | + | 1374 | WP_021553026.1 | conjugal transfer protein TraH | - |
| C6C13_RS25655 () | 21601..24417 | + | 2817 | WP_106023001.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C6C13_RS25660 () | 24450..24971 | + | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| C6C13_RS25665 () | 24996..25727 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| C6C13_RS25670 () | 25980..28133 | + | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| C6C13_RS25675 () | 28142..28540 | - | 399 | WP_000911324.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C6C13_RS25680 () | 28540..28767 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C6C13_RS25685 () | 28849..34119 | + | 5271 | WP_106023002.1 | Multifunctional conjugation protein TraI | Relaxase |
| C6C13_RS25690 () | 34139..34885 | + | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| C6C13_RS25695 () | 34940..35500 | + | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| C6C13_RS25700 () | 35635..35823 | + | 189 | WP_001345829.1 | hypothetical protein | - |
| C6C13_RS27070 () | 36021..36107 | + | 87 | Protein_42 | endonuclease | - |
| C6C13_RS25710 () | 36288..36599 | - | 312 | WP_000802277.1 | hypothetical protein | - |
| - () | 36895..36956 | - | 62 | NuclAT_1 | - | - |
| - () | 36895..36956 | - | 62 | NuclAT_1 | - | - |
| - () | 36895..36956 | - | 62 | NuclAT_1 | - | - |
| - () | 36895..36956 | - | 62 | NuclAT_1 | - | - |
| C6C13_RS25715 () | 36943..37149 | + | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | - |
| C6C13_RS25720 () | 37433..37690 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| C6C13_RS25730 () | 37924..37998 | + | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| C6C13_RS25735 () | 37991..38473 | + | 483 | WP_001443034.1 | hypothetical protein | - |
| C6C13_RS25740 () | 38466..39323 | + | 858 | WP_000774301.1 | incFII family plasmid replication initiator RepA | - |
| C6C13_RS25755 () | 40239..40508 | + | 270 | WP_000195511.1 | hypothetical protein | Antitoxin Detail |
| C6C13_RS25760 () | 40505..40786 | + | 282 | WP_000969978.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6C13_RS25765 () | 40832..41689 | + | 858 | WP_069924904.1 | 3'-5' exonuclease | - |
| C6C13_RS25770 () | 41693..42166 | + | 474 | WP_001351578.1 | hypothetical protein | - |
| C6C13_RS25780 () | 43262..44323 | - | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| C6C13_RS25785 () | 44433..44846 | - | 414 | WP_033561996.1 | hypothetical protein | - |
| C6C13_RS25790 () | 45010..45474 | - | 465 | WP_001351581.1 | polymer-forming cytoskeletal protein | - |
| C6C13_RS25795 () | 45580..45993 | - | 414 | WP_000483319.1 | hypothetical protein | - |
| C6C13_RS25805 () | 46596..46784 | - | 189 | WP_000131420.1 | hypothetical protein | - |
| C6C13_RS25810 () | 47450..48612 | + | 1163 | WP_085947598.1 | IS3 family transposase ISEc17 | Transposase |
| C6C13_RS25815 () | 48876..50339 | + | 1464 | Protein_59 | IS66 family transposase | - |
| C6C13_RS25820 () | 50400..50753 | + | 354 | Protein_60 | IS3 family transposase | - |
| C6C13_RS25825 () | 51288..51980 | - | 693 | WP_000286435.1 | hypothetical protein | - |
| C6C13_RS25835 () | 52733..57265 | - | 4533 | WP_106023005.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| C6C13_RS25845 () | 57934..62049 | - | 4116 | WP_105994771.1 | Outer membrane protein IcsA autotransporter | VF |
| C6C13_RS25850 () | 62770..63717 | + | 948 | WP_001193612.1 | Outer membrane protease OmpP | VF |
| C6C13_RS25855 () | 63822..65309 | + | 1488 | WP_072165818.1 | alpha/beta hydrolase | - |
| C6C13_RS25860 () | 65685..65945 | + | 261 | Protein_66 | hypothetical protein | - |
| C6C13_RS25865 () | 66066..66806 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| C6C13_RS25870 () | 67091..68068 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| C6C13_RS25880 () | 68715..68999 | - | 285 | Protein_69 | IS3 family transposase ISKpn37 | Transposase |
| C6C13_RS25890 () | 69074..69637 | + | 564 | Protein_70 | IS66 family transposase ISSfl3 | Transposase |
| C6C13_RS25895 () | 69624..69887 | + | 264 | WP_001345816.1 | IS66 family transposase ISSfl3 | Transposase |
| C6C13_RS25900 () | 69920..70895 | + | 976 | Protein_72 | IS66 family transposase ISCro1 | Transposase |
| C6C13_RS25915 () | 71239..72426 | + | 1188 | Protein_73 | IS256 family transposase | - |
| C6C13_RS25920 () | 72590..73228 | - | 639 | WP_000502873.1 | ParB N-terminal domain-containing protein | - |
| C6C13_RS25925 () | 73213..74439 | - | 1227 | WP_000017073.1 | phosphoadenosine phosphosulfate reductase | - |
| C6C13_RS25930 () | 75518..75643 | + | 126 | Protein_76 | transposase domain-containing protein | - |
| C6C13_RS25945 () | 75995..78526 | - | 2532 | WP_163448519.1 | Outer membrane protein IcsA autotransporter | VF |
| C6C13_RS25950 () | 79115..80136 | - | 1022 | Protein_78 | IS3 family transposase | - |
| C6C13_RS25955 () | 80203..81184 | + | 982 | Protein_79 | IS110 family transposase | - |
| C6C13_RS25960 () | 81437..81541 | - | 105 | WP_001443026.1 | IS3 family transposase IS1351 | Transposase |
| C6C13_RS25965 () | 81569..82404 | - | 836 | Protein_81 | Right origin-binding protein | VF |
| C6C13_RS25970 () | 83134..84051 | - | 918 | Protein_82 | IS3 family transposase | - |
| C6C13_RS25985 () | 86157..86375 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C6C13_RS25990 () | 86377..86682 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C6C13_RS25995 () | 86711..87490 | + | 780 | WP_050544099.1 | site-specific integrase | - |
| C6C13_RS26000 () | 88211..88966 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| C6C13_RS26005 () | 89554..90720 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| C6C13_RS26010 () | 90720..91691 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| C6C13_RS27075 () | 92429..93330 | + | 902 | Protein_89 | DUF1281 domain-containing protein | - |
| C6C13_RS26025 () | 93334..93639 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| C6C13_RS26030 () | 93716..94399 | + | 684 | WP_000085939.1 | DNA methylase | - |
| C6C13_RS26035 () | 94400..94621 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| C6C13_RS26040 () | 94515..95069 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| C6C13_RS27080 () | 95115..95891 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| C6C13_RS26055 () | 96428..96730 | + | 303 | WP_072095193.1 | antirestriction protein | - |
| C6C13_RS26060 () | 96777..97199 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| C6C13_RS26065 () | 97196..97387 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| C6C13_RS26090 () | 98184..98723 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| C6C13_RS26095 () | 98780..99013 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| C6C13_RS26100 () | 99079..101037 | + | 1959 | WP_000117172.1 | ParB/RepB/Spo0J family partition protein | - |
| C6C13_RS26105 () | 101092..101526 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| C6C13_RS26110 () | 101523..102242 | + | 720 | Protein_102 | plasmid SOS inhibition protein A | - |
| - () | 102254..102452 | + | 199 | NuclAT_0 | - | - |
| - () | 102254..102452 | + | 199 | NuclAT_0 | - | - |
| - () | 102254..102452 | + | 199 | NuclAT_0 | - | - |
| - () | 102254..102452 | + | 199 | NuclAT_0 | - | - |
| C6C13_RS26115 () | 102517..102675 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|