MGE detailed information
MGE type: Prophage MGE length: 22206 bp
Accession: NZ_CP026982 Location: 4064389..4086594 Organism: Pectobacterium parmentieri strain IFB5486 Replicon: chromosome
Accession: NZ_CP026982 Location: 4064389..4086594 Organism: Pectobacterium parmentieri strain IFB5486 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5E22_RS18920 () | 4061509..4061841 | - | 333 | WP_012822539.1 | preprotein translocase subunit SecG | - |
| C5E22_RS18930 () | 4062092..4063429 | - | 1338 | WP_012822537.1 | phosphoglucosamine mutase | - |
| C5E22_RS18935 () | 4063438..4064271 | - | 834 | WP_012822536.1 | dihydropteroate synthase | - |
| C5E22_RS18940 () | 4064389..4066344 | - | 1956 | WP_012822535.1 | ATP-dependent zinc metalloprotease FtsH | - |
| C5E22_RS18945 () | 4066392..4067021 | - | 630 | WP_005971510.1 | 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE | - |
| C5E22_RS18950 () | 4067165..4067458 | + | 294 | WP_005971508.1 | ribosome assembly RNA-binding protein YhbY | - |
| C5E22_RS18955 () | 4067586..4068065 | - | 480 | WP_005971506.1 | transcription elongation factor GreA | - |
| C5E22_RS18960 () | 4068334..4069767 | + | 1434 | WP_033070894.1 | serine-type D-Ala-D-Ala carboxypeptidase | - |
| C5E22_RS18965 () | 4069838..4071010 | - | 1173 | WP_012822533.1 | Obg family GTPase CgtA | - |
| C5E22_RS18970 () | 4071271..4072233 | - | 963 | WP_012822532.1 | DMT family transporter | - |
| C5E22_RS18975 () | 4072323..4072580 | - | 258 | WP_005971498.1 | 50S ribosomal protein L27 | - |
| C5E22_RS18980 () | 4072599..4072910 | - | 312 | WP_005971496.1 | 50S ribosomal protein L21 | - |
| C5E22_RS18985 () | 4073168..4074139 | + | 972 | WP_033070893.1 | octaprenyl diphosphate synthase | - |
| C5E22_RS18990 () | 4074211..4074585 | - | 375 | WP_012822530.1 | putative DNA-binding transcriptional regulator | - |
| C5E22_RS19000 () | 4074834..4075220 | - | 387 | WP_012822529.1 | putative DNA-binding transcriptional regulator | - |
| C5E22_RS19005 () | 4075409..4075672 | + | 264 | WP_005971488.1 | helix-turn-helix domain-containing protein | - |
| C5E22_RS19010 () | 4075736..4076671 | - | 936 | WP_012822528.1 | malate dehydrogenase | - |
| C5E22_RS19015 () | 4077142..4077612 | + | 471 | WP_012773258.1 | transcriptional regulator ArgR | - |
| C5E22_RS19020 () | 4077682..4078695 | - | 1014 | WP_033070892.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| C5E22_RS19025 () | 4078923..4079138 | + | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| C5E22_RS19030 () | 4079292..4081046 | + | 1755 | WP_033070891.1 | DNA primase | - |
| C5E22_RS19035 () | 4081201..4083036 | + | 1836 | WP_005971474.1 | RNA polymerase sigma factor RpoD | - |
| C5E22_RS19040 () | 4083134..4083637 | - | 504 | WP_033070890.1 | G/U mismatch-specific DNA glycosylase | - |
| C5E22_RS19050 () | 4083956..4084789 | - | 834 | WP_121326967.1 | DUF4942 domain-containing protein | - |
| C5E22_RS19055 () | 4084903..4085223 | - | 321 | WP_121326970.1 | TA system toxin CbtA family protein | Toxin Detail |
| C5E22_RS19060 () | 4085289..4085624 | - | 336 | WP_121326973.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C5E22_RS19065 () | 4085639..4086118 | - | 480 | WP_121326976.1 | DNA repair protein RadC | - |
| C5E22_RS19070 () | 4086130..4086546 | - | 417 | WP_121327030.1 | antirestriction protein | - |
| C5E22_RS19075 () | 4086783..4089917 | - | 3135 | WP_121326979.1 | AIDA repeat-containing protein | - |
| C5E22_RS19080 () | 4089988..4090674 | - | 687 | WP_121326982.1 | WYL domain-containing protein | - |
| C5E22_RS19085 () | 4090908..4091024 | - | 117 | Protein_3659 | DUF945 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|