MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73063 bp
Accession: NZ_CP026980 Location: 1801607..1874669 Organism: Pectobacterium parmentieri strain IFB5441 Replicon: chromosome
Accession: NZ_CP026980 Location: 1801607..1874669 Organism: Pectobacterium parmentieri strain IFB5441 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5E20_RS08665 () | 1797004..1798275 | - | 1272 | WP_121264772.1 | integrase arm-type DNA-binding domain-containing protein | - |
| C5E20_RS08675 () | 1798635..1799432 | - | 798 | WP_014699207.1 | DgsA anti-repressor MtfA | - |
| C5E20_RS08685 () | 1800285..1801474 | - | 1190 | Protein_1653 | integrase arm-type DNA-binding domain-containing protein | - |
| C5E20_RS08690 () | 1802151..1802606 | + | 456 | WP_121264775.1 | hypothetical protein | - |
| C5E20_RS08695 () | 1802774..1803649 | + | 876 | WP_121264778.1 | hypothetical protein | - |
| C5E20_RS08700 () | 1803888..1804106 | + | 219 | WP_121264781.1 | AlpA family transcriptional regulator | - |
| C5E20_RS08705 () | 1804139..1804453 | + | 315 | WP_121264784.1 | hypothetical protein | - |
| C5E20_RS08710 () | 1804533..1804829 | + | 297 | WP_121264787.1 | hypothetical protein | - |
| C5E20_RS08715 () | 1804909..1805145 | + | 237 | WP_113626259.1 | hypothetical protein | - |
| C5E20_RS08720 () | 1805185..1805535 | + | 351 | WP_121264790.1 | hypothetical protein | - |
| C5E20_RS08725 () | 1805604..1805846 | + | 243 | WP_121266647.1 | DNA-binding protein | - |
| C5E20_RS08730 () | 1805965..1806288 | + | 324 | WP_121264793.1 | antibiotic biosynthesis monooxygenase | - |
| C5E20_RS08735 () | 1806281..1806673 | + | 393 | WP_121264796.1 | amino acid-binding protein | - |
| C5E20_RS08740 () | 1806675..1807376 | + | 702 | WP_121264799.1 | winged helix-turn-helix domain-containing protein | - |
| C5E20_RS08745 () | 1807383..1807862 | - | 480 | WP_121264802.1 | DUF4756 family protein | - |
| C5E20_RS08750 () | 1807959..1808759 | - | 801 | WP_121264805.1 | hypothetical protein | - |
| C5E20_RS08755 () | 1808782..1809516 | - | 735 | WP_121264808.1 | DNA-binding protein | - |
| C5E20_RS08760 () | 1810610..1811296 | + | 687 | WP_121264810.1 | hypothetical protein | - |
| C5E20_RS08765 () | 1811424..1812464 | + | 1041 | WP_121264813.1 | DUF4238 domain-containing protein | - |
| C5E20_RS08770 () | 1812550..1812927 | - | 378 | WP_121264816.1 | hypothetical protein | - |
| C5E20_RS08780 () | 1813560..1814114 | + | 555 | WP_121264819.1 | membrane lipoprotein lipid attachment site-containing protein | - |
| C5E20_RS08785 () | 1814125..1814400 | + | 276 | WP_113626231.1 | hypothetical protein | - |
| C5E20_RS08790 () | 1814490..1815383 | - | 894 | WP_121264821.1 | DUF4145 domain-containing protein | - |
| C5E20_RS08795 () | 1815469..1816857 | - | 1389 | WP_121264824.1 | MobA/MobL family protein | - |
| C5E20_RS08800 () | 1817535..1817960 | + | 426 | WP_121264827.1 | hypothetical protein | - |
| C5E20_RS08805 () | 1818055..1818720 | + | 666 | WP_121264830.1 | hypothetical protein | - |
| C5E20_RS08810 () | 1819045..1819497 | + | 453 | WP_121264834.1 | NUDIX domain-containing protein | - |
| C5E20_RS08815 () | 1819838..1820131 | + | 294 | WP_121264837.1 | hypothetical protein | - |
| C5E20_RS08820 () | 1820160..1820444 | + | 285 | WP_121264840.1 | conjugal transfer protein TraD | - |
| C5E20_RS08825 () | 1820533..1820973 | - | 441 | WP_121264843.1 | acetyltransferase | - |
| C5E20_RS08830 () | 1821045..1821148 | - | 104 | Protein_1681 | H-NS histone family protein | - |
| C5E20_RS08835 () | 1821411..1822133 | + | 723 | WP_121264846.1 | hypothetical protein | - |
| C5E20_RS08840 () | 1822136..1822624 | + | 489 | WP_121264849.1 | hypothetical protein | - |
| C5E20_RS08845 () | 1822958..1824555 | + | 1598 | Protein_1684 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| C5E20_RS08850 () | 1824717..1826528 | + | 1812 | WP_121264852.1 | S-type pyocin domain-containing protein | - |
| C5E20_RS08855 () | 1826525..1826998 | + | 474 | WP_121264855.1 | pyocin immunity protein | - |
| C5E20_RS08860 () | 1827324..1827524 | + | 201 | WP_121264859.1 | hypothetical protein | - |
| C5E20_RS24040 () | 1827775..1828293 | + | 519 | WP_162939922.1 | hypothetical protein | - |
| C5E20_RS24250 () | 1828307..1829566 | + | 1260 | WP_198339790.1 | hypothetical protein | - |
| C5E20_RS24045 () | 1829743..1829913 | - | 171 | WP_162939923.1 | hypothetical protein | - |
| C5E20_RS08875 () | 1830439..1830660 | - | 222 | WP_039498689.1 | hypothetical protein | VF |
| C5E20_RS08880 () | 1830861..1832138 | - | 1278 | WP_121264865.1 | Prophage integrase IntA ; Integrase | Integrase |
| C5E20_RS08885 () | 1832690..1833352 | + | 663 | WP_121268788.1 | hypothetical protein | - |
| C5E20_RS08890 () | 1833999..1834994 | + | 996 | WP_121268790.1 | hypothetical protein | - |
| C5E20_RS08895 () | 1835641..1835880 | + | 240 | WP_121268792.1 | hypothetical protein | - |
| C5E20_RS08900 () | 1835932..1836222 | + | 291 | WP_121268794.1 | HTH-type transcriptional regulator DdrOC | VF |
| C5E20_RS08905 () | 1836203..1837174 | + | 972 | WP_121268796.1 | reverse transcriptase family protein | - |
| C5E20_RS08910 () | 1837214..1841062 | + | 3849 | WP_121268798.1 | hypothetical protein | - |
| C5E20_RS24050 () | 1841478..1841681 | - | 204 | WP_162939924.1 | hypothetical protein | - |
| C5E20_RS08920 () | 1842155..1843099 | + | 945 | WP_121268802.1 | DUF1738 domain-containing protein | - |
| C5E20_RS08925 () | 1843418..1843654 | + | 237 | WP_014699357.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| C5E20_RS08930 () | 1843657..1843971 | + | 315 | WP_121268804.1 | CcdB family protein | Toxin Detail |
| C5E20_RS08935 () | 1844005..1844259 | - | 255 | WP_121268806.1 | mobilization protein mobC | - |
| C5E20_RS08940 () | 1844352..1845398 | + | 1047 | WP_121268808.1 | DUF3800 domain-containing protein | - |
| C5E20_RS08945 () | 1845756..1846052 | - | 297 | WP_121268810.1 | hypothetical protein | - |
| C5E20_RS08950 () | 1846320..1847306 | - | 987 | WP_121268812.1 | hypothetical protein | - |
| C5E20_RS24055 () | 1847566..1847724 | + | 159 | WP_162939925.1 | hypothetical protein | - |
| C5E20_RS08955 () | 1848189..1848806 | + | 618 | WP_121268814.1 | GNAT family N-acetyltransferase | - |
| C5E20_RS08960 () | 1849070..1850944 | + | 1875 | WP_121268816.1 | AAA family ATPase | - |
| C5E20_RS08965 () | 1850941..1852668 | + | 1728 | WP_121268818.1 | ATP-dependent helicase | - |
| C5E20_RS08970 () | 1852869..1853615 | - | 747 | WP_121268820.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C5E20_RS08975 () | 1853624..1855486 | - | 1863 | WP_121268822.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C5E20_RS08980 () | 1856210..1856512 | - | 303 | WP_121268824.1 | conjugal transfer protein | - |
| C5E20_RS08985 () | 1856584..1857600 | - | 1017 | WP_121268826.1 | Type IV secretion system protein VirB11 | VF |
| C5E20_RS08990 () | 1857590..1858813 | - | 1224 | WP_121268828.1 | Type IV secretion system protein virB10 | VF |
| C5E20_RS08995 () | 1858810..1859703 | - | 894 | WP_121268830.1 | P-type conjugative transfer protein VirB9 | - |
| C5E20_RS09000 () | 1859700..1860383 | - | 684 | WP_026741521.1 | Type IV secretion system protein PtlE | VF |
| C5E20_RS09005 () | 1860604..1861644 | - | 1041 | WP_121268832.1 | type IV secretion system protein | - |
| C5E20_RS09010 () | 1861656..1861880 | - | 225 | WP_039551199.1 | EexN family lipoprotein | - |
| C5E20_RS09015 () | 1861891..1862607 | - | 717 | WP_121268834.1 | type IV secretion system protein | - |
| C5E20_RS09020 () | 1862631..1865378 | - | 2748 | WP_121268836.1 | Type IV secretion system protein virB4 | VF |
| C5E20_RS09025 () | 1865388..1865669 | - | 282 | WP_107332632.1 | TrbC/VirB2 family protein | - |
| C5E20_RS09030 () | 1865666..1866331 | - | 666 | WP_121268838.1 | Type IV secretion system protein virB1 | VF |
| C5E20_RS09035 () | 1866412..1866633 | - | 222 | WP_039285692.1 | hypothetical protein | - |
| C5E20_RS09040 () | 1867119..1869149 | + | 2031 | WP_121268840.1 | hypothetical protein | - |
| C5E20_RS09045 () | 1869371..1869580 | - | 210 | WP_121268842.1 | TraR/DksA family transcriptional regulator | - |
| C5E20_RS09050 () | 1869570..1870154 | - | 585 | WP_121268844.1 | DUF2857 domain-containing protein | - |
| C5E20_RS09055 () | 1870171..1870365 | - | 195 | WP_107332642.1 | AlpA family transcriptional regulator | - |
| C5E20_RS09060 () | 1870519..1871433 | - | 915 | WP_121268846.1 | hypothetical protein | - |
| C5E20_RS09065 () | 1871537..1871725 | + | 189 | WP_121268848.1 | hypothetical protein | - |
| C5E20_RS09070 () | 1871846..1872118 | - | 273 | WP_039468625.1 | helix-turn-helix domain-containing protein | - |
| C5E20_RS09075 () | 1872265..1872579 | + | 315 | WP_025918866.1 | helix-turn-helix domain-containing protein | - |
| C5E20_RS09080 () | 1872764..1873078 | + | 315 | WP_025918867.1 | helix-turn-helix domain-containing protein | - |
| C5E20_RS09085 () | 1873213..1874484 | - | 1272 | WP_121268850.1 | Prophage integrase IntA ; Integrase | Integrase |
| C5E20_RS09095 () | 1874870..1876126 | - | 1257 | WP_015730214.1 | MFS transporter | - |
| C5E20_RS09100 () | 1876255..1879386 | - | 3132 | WP_121264961.1 | beta-galactosidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|