MGE detailed information
MGE type: Prophage MGE length: 52931 bp
Accession: NZ_CP026929 Location: 2366408..2419338 Organism: Escherichia coli strain CFS3246 Replicon: chromosome
Accession: NZ_CP026929 Location: 2366408..2419338 Organism: Escherichia coli strain CFS3246 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4962_RS11515 () | 2361735..2362445 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C4962_RS11520 () | 2362448..2363008 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C4962_RS11525 () | 2363043..2363384 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| C4962_RS11530 () | 2363519..2363845 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| C4962_RS11535 () | 2364051..2365265 | + | 1215 | WP_159373745.1 | starvation-sensing protein RspA | - |
| C4962_RS11540 () | 2365277..2366296 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| C4962_RS24390 () | 2367729..2367800 | + | 72 | WP_167738956.1 | MHS family MFS transporter | - |
| C4962_RS11550 () | 2367820..2369100 | - | 1281 | WP_000876958.1 | site-specific integrase | - |
| C4962_RS11555 () | 2369135..2369386 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C4962_RS11560 () | 2369459..2371930 | - | 2472 | WP_000048342.1 | exonuclease | - |
| C4962_RS11565 () | 2372023..2372214 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C4962_RS11570 () | 2372211..2372399 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C4962_RS11575 () | 2372799..2372963 | + | 165 | WP_001329848.1 | hypothetical protein | - |
| C4962_RS11580 () | 2372967..2373185 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| C4962_RS11585 () | 2373345..2373500 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C4962_RS11590 () | 2373667..2374074 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C4962_RS11595 () | 2374158..2374388 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C4962_RS11600 () | 2374372..2374893 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| C4962_RS11605 () | 2374874..2375839 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| C4962_RS11610 () | 2375880..2376302 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| C4962_RS11615 () | 2376299..2376655 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| C4962_RS11620 () | 2377175..2378710 | - | 1536 | WP_001333339.1 | IS66-like element ISEc22 family transposase | - |
| C4962_RS11625 () | 2378759..2379106 | - | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C4962_RS11630 () | 2379103..2379507 | - | 405 | WP_000839179.1 | IS66 family insertion sequence hypothetical protein | - |
| C4962_RS24395 () | 2380232..2380450 | + | 219 | WP_072096395.1 | hypothetical protein | - |
| C4962_RS11635 () | 2380425..2380607 | - | 183 | WP_000955178.1 | hypothetical protein | - |
| C4962_RS11640 () | 2380785..2382098 | + | 1314 | WP_000589005.1 | ISNCY family transposase | - |
| C4962_RS11645 () | 2382535..2382867 | - | 333 | WP_001301033.1 | protein FlxA | - |
| C4962_RS11650 () | 2383070..2383375 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| C4962_RS11655 () | 2383400..2383639 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C4962_RS11660 () | 2383639..2383926 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C4962_RS11665 () | 2383998..2384153 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C4962_RS11670 () | 2384370..2384621 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| C4962_RS11675 () | 2384688..2384966 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| C4962_RS11680 () | 2384968..2386017 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| C4962_RS11685 () | 2386031..2386783 | + | 753 | WP_001047135.1 | antitermination protein | - |
| C4962_RS11690 () | 2387061..2387150 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| C4962_RS11695 () | 2387205..2387417 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C4962_RS11700 () | 2387718..2387933 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C4962_RS11705 () | 2388687..2388902 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C4962_RS11710 () | 2388907..2389218 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| C4962_RS11715 () | 2389215..2389748 | + | 534 | WP_001092971.1 | lysozyme | - |
| C4962_RS11720 () | 2389745..2390242 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C4962_RS11725 () | 2390605..2390817 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C4962_RS11730 () | 2390828..2391016 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| C4962_RS11735 () | 2391019..2391084 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| C4962_RS11740 () | 2391164..2391319 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| C4962_RS11745 () | 2391491..2391664 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C4962_RS11750 () | 2391816..2392226 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C4962_RS11755 () | 2392284..2392517 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C4962_RS11760 () | 2392906..2393451 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| C4962_RS11765 () | 2393426..2395351 | + | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| C4962_RS11770 () | 2395348..2395554 | + | 207 | WP_000198149.1 | gpW family protein | - |
| C4962_RS11775 () | 2395551..2397152 | + | 1602 | WP_001349919.1 | phage portal protein | - |
| C4962_RS11780 () | 2397133..2398452 | + | 1320 | WP_000123218.1 | S49 family peptidase | - |
| C4962_RS11785 () | 2398462..2398794 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C4962_RS11790 () | 2398851..2399876 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| C4962_RS11795 () | 2399879..2400244 | + | 366 | WP_089508102.1 | DNA-packaging protein FI | - |
| C4962_RS11800 () | 2400256..2400609 | + | 354 | WP_000753007.1 | head-tail joining protein | - |
| C4962_RS11805 () | 2400621..2401199 | + | 579 | WP_000975070.1 | phage tail protein | - |
| C4962_RS11810 () | 2401196..2401591 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| C4962_RS11815 () | 2401599..2402339 | + | 741 | WP_001349920.1 | phage tail protein | - |
| C4962_RS11820 () | 2402355..2402777 | + | 423 | WP_000479142.1 | phage minor tail protein G | - |
| C4962_RS11825 () | 2402759..2403193 | + | 435 | WP_000459465.1 | phage tail assembly protein T | - |
| C4962_RS11830 () | 2403186..2405747 | + | 2562 | WP_000840342.1 | phage tail tape measure protein | - |
| C4962_RS11835 () | 2405744..2406073 | + | 330 | WP_000847379.1 | phage tail protein | - |
| C4962_RS11840 () | 2406073..2406771 | + | 699 | WP_001152640.1 | phage minor tail protein L | - |
| C4962_RS11845 () | 2406777..2407520 | + | 744 | WP_000194783.1 | C40 family peptidase | - |
| C4962_RS11850 () | 2407457..2408089 | + | 633 | WP_000090895.1 | tail assembly protein | - |
| C4962_RS11855 () | 2408150..2411647 | + | 3498 | WP_000515714.1 | host specificity protein J | - |
| C4962_RS11860 () | 2411717..2412316 | + | 600 | WP_001230375.1 | Ail/Lom family protein | - |
| C4962_RS11865 () | 2412381..2415455 | + | 3075 | WP_000279080.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C4962_RS11870 () | 2415455..2416030 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C4962_RS11875 () | 2416128..2416718 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| C4962_RS11880 () | 2417035..2417268 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C4962_RS11885 () | 2417337..2417450 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| C4962_RS11890 () | 2418055..2419338 | + | 1284 | WP_000347482.1 | MHS family MFS transporter | - |
| C4962_RS11895 () | 2419427..2420887 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| C4962_RS11900 () | 2420922..2421125 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C4962_RS11905 () | 2421302..2421988 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C4962_RS11910 () | 2422077..2422823 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|